data_4NRO
#
_model_server_result.job_id            '_QcXiBCEt9hjlrBpXlVyNA' 
_model_server_result.datetime_utc      '2025-07-17 23:04:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nro 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    4NRO 
#
_exptl.entry_id    4NRO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              146.098 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-OXOGLUTARIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NRO 
_cell.length_a            56.177 
_cell.length_b            56.177 
_cell.length_c            144.94 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NRO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 168 A CYS 230 1_555 A SG CYS 205 A CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc1 A NE2 HIS 142 A HIS 204 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc2 A OD1 ASP 144 A ASP 206 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc3 A NE2 HIS 204 A HIS 266 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? 
metalc ? metalc4 B MN MN . A MN 301 1_555 C O1 AKG . A AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc5 B MN MN . A MN 301 1_555 C O5 AKG . A AKG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc6 B MN MN . A MN 301 1_555 D O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
#
_chem_comp.formula           'C5 H6 O5' 
_chem_comp.formula_weight    146.098 
_chem_comp.id                AKG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-OXOGLUTARIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 AKG doub 1 n n 
C1 O2 AKG sing 2 n n 
C1 C2 AKG sing 3 n n 
O2 HO2 AKG sing 4 n n 
C2 O5 AKG doub 5 n n 
C2 C3 AKG sing 6 n n 
C3 C4 AKG sing 7 n n 
C3 H31 AKG sing 8 n n 
C3 H32 AKG sing 9 n n 
C4 C5 AKG sing 10 n n 
C4 H41 AKG sing 11 n n 
C4 H42 AKG sing 12 n n 
C5 O3 AKG doub 13 n n 
C5 O4 AKG sing 14 n n 
O4 HO4 AKG sing 15 n n 
#
_atom_sites.entry_id                     4NRO 
_atom_sites.fract_transf_matrix[1][1]    0.017801 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017801 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006899 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 301 301 MN MN . 
C 3 AKG A 1 302 302 AKG AKG . 
D 4 HOH A 1 401 401 HOH HOH . 
D 4 HOH A 2 402 402 HOH HOH . 
D 4 HOH A 3 403 403 HOH HOH . 
D 4 HOH A 4 404 404 HOH HOH . 
D 4 HOH A 5 405 405 HOH HOH . 
D 4 HOH A 6 406 406 HOH HOH . 
D 4 HOH A 7 407 407 HOH HOH . 
D 4 HOH A 8 408 408 HOH HOH . 
D 4 HOH A 9 409 409 HOH HOH . 
D 4 HOH A 10 410 410 HOH HOH . 
D 4 HOH A 11 411 411 HOH HOH . 
D 4 HOH A 12 412 412 HOH HOH . 
D 4 HOH A 13 413 413 HOH HOH . 
D 4 HOH A 14 414 414 HOH HOH . 
D 4 HOH A 15 415 415 HOH HOH . 
D 4 HOH A 16 416 416 HOH HOH . 
D 4 HOH A 17 417 417 HOH HOH . 
D 4 HOH A 18 418 418 HOH HOH . 
D 4 HOH A 19 419 419 HOH HOH . 
D 4 HOH A 20 420 420 HOH HOH . 
D 4 HOH A 21 421 421 HOH HOH . 
D 4 HOH A 22 422 422 HOH HOH . 
D 4 HOH A 23 423 423 HOH HOH . 
D 4 HOH A 24 424 424 HOH HOH . 
D 4 HOH A 25 425 425 HOH HOH . 
D 4 HOH A 26 426 426 HOH HOH . 
D 4 HOH A 27 427 427 HOH HOH . 
D 4 HOH A 28 428 428 HOH HOH . 
D 4 HOH A 29 429 429 HOH HOH . 
D 4 HOH A 30 430 430 HOH HOH . 
D 4 HOH A 31 431 431 HOH HOH . 
D 4 HOH A 32 432 432 HOH HOH . 
D 4 HOH A 33 433 433 HOH HOH . 
D 4 HOH A 34 434 434 HOH HOH . 
D 4 HOH A 35 435 435 HOH HOH . 
D 4 HOH A 36 436 436 HOH HOH . 
D 4 HOH A 37 437 437 HOH HOH . 
D 4 HOH A 38 438 438 HOH HOH . 
D 4 HOH A 39 439 439 HOH HOH . 
D 4 HOH A 40 440 440 HOH HOH . 
D 4 HOH A 41 441 441 HOH HOH . 
D 4 HOH A 42 442 442 HOH HOH . 
D 4 HOH A 43 443 443 HOH HOH . 
D 4 HOH A 44 444 444 HOH HOH . 
D 4 HOH A 45 445 445 HOH HOH . 
D 4 HOH A 46 446 446 HOH HOH . 
D 4 HOH A 47 447 447 HOH HOH . 
D 4 HOH A 48 448 448 HOH HOH . 
D 4 HOH A 49 449 449 HOH HOH . 
D 4 HOH A 50 450 450 HOH HOH . 
D 4 HOH A 51 451 451 HOH HOH . 
D 4 HOH A 52 452 452 HOH HOH . 
D 4 HOH A 53 453 453 HOH HOH . 
D 4 HOH A 54 454 454 HOH HOH . 
D 4 HOH A 55 455 455 HOH HOH . 
D 4 HOH A 56 456 456 HOH HOH . 
D 4 HOH A 57 457 457 HOH HOH . 
D 4 HOH A 58 458 458 HOH HOH . 
D 4 HOH A 59 459 459 HOH HOH . 
D 4 HOH A 60 460 460 HOH HOH . 
D 4 HOH A 61 461 461 HOH HOH . 
D 4 HOH A 62 462 462 HOH HOH . 
D 4 HOH A 63 463 463 HOH HOH . 
D 4 HOH A 64 464 464 HOH HOH . 
D 4 HOH A 65 465 465 HOH HOH . 
D 4 HOH A 66 466 466 HOH HOH . 
D 4 HOH A 67 467 467 HOH HOH . 
D 4 HOH A 68 468 468 HOH HOH . 
D 4 HOH A 69 469 469 HOH HOH . 
D 4 HOH A 70 470 470 HOH HOH . 
D 4 HOH A 71 471 471 HOH HOH . 
D 4 HOH A 72 472 472 HOH HOH . 
D 4 HOH A 73 473 473 HOH HOH . 
D 4 HOH A 74 474 474 HOH HOH . 
D 4 HOH A 75 475 475 HOH HOH . 
D 4 HOH A 76 476 476 HOH HOH . 
D 4 HOH A 77 477 477 HOH HOH . 
D 4 HOH A 78 478 478 HOH HOH . 
D 4 HOH A 79 479 479 HOH HOH . 
D 4 HOH A 80 480 480 HOH HOH . 
D 4 HOH A 81 481 481 HOH HOH . 
D 4 HOH A 82 482 482 HOH HOH . 
D 4 HOH A 83 483 483 HOH HOH . 
D 4 HOH A 84 484 484 HOH HOH . 
D 4 HOH A 85 485 485 HOH HOH . 
D 4 HOH A 86 486 486 HOH HOH . 
D 4 HOH A 87 487 487 HOH HOH . 
D 4 HOH A 88 488 488 HOH HOH . 
D 4 HOH A 89 489 489 HOH HOH . 
D 4 HOH A 90 490 490 HOH HOH . 
D 4 HOH A 91 491 491 HOH HOH . 
D 4 HOH A 92 492 492 HOH HOH . 
D 4 HOH A 93 493 493 HOH HOH . 
D 4 HOH A 94 494 494 HOH HOH . 
D 4 HOH A 95 495 495 HOH HOH . 
D 4 HOH A 96 496 496 HOH HOH . 
D 4 HOH A 97 497 497 HOH HOH . 
D 4 HOH A 98 498 498 HOH HOH . 
D 4 HOH A 99 499 499 HOH HOH . 
D 4 HOH A 100 500 500 HOH HOH . 
D 4 HOH A 101 501 501 HOH HOH . 
D 4 HOH A 102 502 502 HOH HOH . 
D 4 HOH A 103 503 503 HOH HOH . 
D 4 HOH A 104 504 504 HOH HOH . 
D 4 HOH A 105 505 505 HOH HOH . 
D 4 HOH A 106 506 506 HOH HOH . 
D 4 HOH A 107 507 507 HOH HOH . 
D 4 HOH A 108 508 508 HOH HOH . 
D 4 HOH A 109 509 509 HOH HOH . 
D 4 HOH A 110 510 510 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 AKG . . . C 3 12.516 20.492 16.789 1 59.92 ? C1 AKG 302 A 1 
HETATM 2 O O1 AKG . . . C 3 11.446 20.072 17.294 1 58.28 ? O1 AKG 302 A 1 
HETATM 3 O O2 AKG . . . C 3 13.62 20.11 17.231 1 57.57 ? O2 AKG 302 A 1 
HETATM 4 C C2 AKG . . . C 3 12.481 21.455 15.684 1 61.44 ? C2 AKG 302 A 1 
HETATM 5 O O5 AKG . . . C 3 11.708 21.279 14.756 1 61.83 ? O5 AKG 302 A 1 
HETATM 6 C C3 AKG . . . C 3 13.411 22.657 15.709 1 64.61 ? C3 AKG 302 A 1 
HETATM 7 C C4 AKG . . . C 3 13.05 23.734 14.687 1 61.47 ? C4 AKG 302 A 1 
HETATM 8 C C5 AKG . . . C 3 14.297 24.478 14.252 1 61.9 ? C5 AKG 302 A 1 
HETATM 9 O O3 AKG . . . C 3 14.215 25.699 13.981 1 58.37 ? O3 AKG 302 A 1 
HETATM 10 O O4 AKG . . . C 3 15.381 23.857 14.162 1 65.11 ? O4 AKG 302 A 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           223 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           10 
#