data_4NRP
#
_model_server_result.job_id            cNHLNCuIy8oV6M99eH_zRQ 
_model_server_result.datetime_utc      '2025-07-12 20:40:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nrp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    4NRP 
#
_exptl.entry_id    4NRP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              147.086 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-OXALYLGLYCINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NRP 
_cell.length_a            56.555 
_cell.length_b            56.555 
_cell.length_c            143.87 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NRP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 168 A CYS 230 1_555 A SG CYS 205 A CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc1 A NE2 HIS 142 A HIS 204 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc2 A OD1 ASP 144 A ASP 206 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc3 A NE2 HIS 204 A HIS 266 1_555 B MN MN . A MN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc4 B MN MN . A MN 301 1_555 C O2' OGA . A OGA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc5 B MN MN . A MN 301 1_555 C O2 OGA . A OGA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
#
_chem_comp.formula           'C4 H5 N O5' 
_chem_comp.formula_weight    147.086 
_chem_comp.id                OGA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-OXALYLGLYCINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 OGA sing 237 n n 
C1 O1 OGA doub 238 n n 
C1 O2 OGA sing 239 n n 
C2 O2' OGA doub 240 n n 
C2 N1 OGA sing 241 n n 
C4 C5 OGA sing 242 n n 
C4 N1 OGA sing 243 n n 
C4 H4C1 OGA sing 244 n n 
C4 H4C2 OGA sing 245 n n 
C5 O3 OGA sing 246 n n 
C5 O4 OGA doub 247 n n 
O2 H2 OGA sing 248 n n 
O3 H3 OGA sing 249 n n 
N1 H1 OGA sing 250 n n 
#
_atom_sites.entry_id                     4NRP 
_atom_sites.fract_transf_matrix[1][1]    0.017682 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017682 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006951 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 301 301 MN MN . 
C 3 OGA A 1 302 302 OGA OGA . 
D 4 HOH A 1 401 401 HOH HOH . 
D 4 HOH A 2 402 402 HOH HOH . 
D 4 HOH A 3 403 403 HOH HOH . 
D 4 HOH A 4 404 404 HOH HOH . 
D 4 HOH A 5 405 405 HOH HOH . 
D 4 HOH A 6 406 406 HOH HOH . 
D 4 HOH A 7 407 407 HOH HOH . 
D 4 HOH A 8 408 408 HOH HOH . 
D 4 HOH A 9 409 409 HOH HOH . 
D 4 HOH A 10 410 410 HOH HOH . 
D 4 HOH A 11 411 411 HOH HOH . 
D 4 HOH A 12 412 412 HOH HOH . 
D 4 HOH A 13 413 413 HOH HOH . 
D 4 HOH A 14 414 414 HOH HOH . 
D 4 HOH A 15 415 415 HOH HOH . 
D 4 HOH A 16 416 416 HOH HOH . 
D 4 HOH A 17 417 417 HOH HOH . 
D 4 HOH A 18 418 418 HOH HOH . 
D 4 HOH A 19 419 419 HOH HOH . 
D 4 HOH A 20 420 420 HOH HOH . 
D 4 HOH A 21 421 421 HOH HOH . 
D 4 HOH A 22 422 422 HOH HOH . 
D 4 HOH A 23 423 423 HOH HOH . 
D 4 HOH A 24 424 424 HOH HOH . 
D 4 HOH A 25 425 425 HOH HOH . 
D 4 HOH A 26 426 426 HOH HOH . 
D 4 HOH A 27 427 427 HOH HOH . 
D 4 HOH A 28 428 428 HOH HOH . 
D 4 HOH A 29 429 429 HOH HOH . 
D 4 HOH A 30 430 430 HOH HOH . 
D 4 HOH A 31 431 431 HOH HOH . 
D 4 HOH A 32 432 432 HOH HOH . 
D 4 HOH A 33 433 433 HOH HOH . 
D 4 HOH A 34 434 434 HOH HOH . 
D 4 HOH A 35 435 435 HOH HOH . 
D 4 HOH A 36 436 436 HOH HOH . 
D 4 HOH A 37 437 437 HOH HOH . 
D 4 HOH A 38 438 438 HOH HOH . 
D 4 HOH A 39 439 439 HOH HOH . 
D 4 HOH A 40 440 440 HOH HOH . 
D 4 HOH A 41 441 441 HOH HOH . 
D 4 HOH A 42 442 442 HOH HOH . 
D 4 HOH A 43 443 443 HOH HOH . 
D 4 HOH A 44 444 444 HOH HOH . 
D 4 HOH A 45 445 445 HOH HOH . 
D 4 HOH A 46 446 446 HOH HOH . 
D 4 HOH A 47 447 447 HOH HOH . 
D 4 HOH A 48 448 448 HOH HOH . 
D 4 HOH A 49 449 449 HOH HOH . 
D 4 HOH A 50 450 451 HOH HOH . 
D 4 HOH A 51 451 452 HOH HOH . 
D 4 HOH A 52 452 453 HOH HOH . 
D 4 HOH A 53 453 454 HOH HOH . 
D 4 HOH A 54 454 455 HOH HOH . 
D 4 HOH A 55 455 457 HOH HOH . 
D 4 HOH A 56 456 458 HOH HOH . 
D 4 HOH A 57 457 459 HOH HOH . 
D 4 HOH A 58 458 460 HOH HOH . 
D 4 HOH A 59 459 461 HOH HOH . 
D 4 HOH A 60 460 462 HOH HOH . 
D 4 HOH A 61 461 463 HOH HOH . 
D 4 HOH A 62 462 464 HOH HOH . 
D 4 HOH A 63 463 465 HOH HOH . 
D 4 HOH A 64 464 466 HOH HOH . 
D 4 HOH A 65 465 467 HOH HOH . 
D 4 HOH A 66 466 468 HOH HOH . 
D 4 HOH A 67 467 469 HOH HOH . 
D 4 HOH A 68 468 470 HOH HOH . 
D 4 HOH A 69 469 471 HOH HOH . 
D 4 HOH A 70 470 472 HOH HOH . 
D 4 HOH A 71 471 473 HOH HOH . 
D 4 HOH A 72 472 474 HOH HOH . 
D 4 HOH A 73 473 475 HOH HOH . 
D 4 HOH A 74 474 476 HOH HOH . 
D 4 HOH A 75 475 477 HOH HOH . 
D 4 HOH A 76 476 478 HOH HOH . 
D 4 HOH A 77 477 479 HOH HOH . 
D 4 HOH A 78 478 480 HOH HOH . 
D 4 HOH A 79 479 481 HOH HOH . 
D 4 HOH A 80 480 482 HOH HOH . 
D 4 HOH A 81 481 483 HOH HOH . 
D 4 HOH A 82 482 486 HOH HOH . 
D 4 HOH A 83 483 487 HOH HOH . 
D 4 HOH A 84 484 488 HOH HOH . 
D 4 HOH A 85 485 489 HOH HOH . 
D 4 HOH A 86 486 490 HOH HOH . 
D 4 HOH A 87 487 491 HOH HOH . 
D 4 HOH A 88 488 492 HOH HOH . 
D 4 HOH A 89 489 493 HOH HOH . 
D 4 HOH A 90 490 494 HOH HOH . 
D 4 HOH A 91 491 495 HOH HOH . 
D 4 HOH A 92 492 496 HOH HOH . 
D 4 HOH A 93 493 497 HOH HOH . 
D 4 HOH A 94 494 498 HOH HOH . 
D 4 HOH A 95 495 499 HOH HOH . 
D 4 HOH A 96 496 500 HOH HOH . 
D 4 HOH A 97 497 501 HOH HOH . 
D 4 HOH A 98 498 502 HOH HOH . 
D 4 HOH A 99 499 503 HOH HOH . 
D 4 HOH A 100 500 505 HOH HOH . 
D 4 HOH A 101 501 506 HOH HOH . 
D 4 HOH A 102 502 507 HOH HOH . 
D 4 HOH A 103 503 508 HOH HOH . 
D 4 HOH A 104 504 509 HOH HOH . 
D 4 HOH A 105 505 510 HOH HOH . 
D 4 HOH A 106 506 511 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 OGA . . . C 3 -7.753 15.562 -19.292 1 18.89 ? C1 OGA 302 A 1 
HETATM 2 C C2 OGA . . . C 3 -6.866 15.538 -20.458 1 19.21 ? C2 OGA 302 A 1 
HETATM 3 C C4 OGA . . . C 3 -5.025 14.629 -21.654 1 25.19 ? C4 OGA 302 A 1 
HETATM 4 C C5 OGA . . . C 3 -4.147 13.417 -21.818 1 27.58 ? C5 OGA 302 A 1 
HETATM 5 O O1 OGA . . . C 3 -8.079 14.495 -18.73 1 21.6 ? O1 OGA 302 A 1 
HETATM 6 O O2 OGA . . . C 3 -8.161 16.67 -18.873 1 16.37 ? O2 OGA 302 A 1 
HETATM 7 O O2' OGA . . . C 3 -6.711 16.569 -21.083 1 16.74 ? O2' OGA 302 A 1 
HETATM 8 O O3 OGA . . . C 3 -2.939 13.616 -22.091 1 29 ? O3 OGA 302 A 1 
HETATM 9 N N1 OGA . . . C 3 -6.209 14.439 -20.828 1 23.46 ? N1 OGA 302 A 1 
HETATM 10 O O4 OGA . . . C 3 -4.664 12.281 -21.699 1 26.42 ? O4 OGA 302 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#