data_4NRQ # _model_server_result.job_id l4tlkQCbS9YdUe5OnM9D6A _model_server_result.datetime_utc '2025-07-14 17:07:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nrq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4NRQ # _exptl.entry_id 4NRQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 167.119 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYRIDINE-2,4-DICARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NRQ _cell.length_a 56.767 _cell.length_b 56.767 _cell.length_c 144.706 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NRQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 168 A CYS 230 1_555 A SG CYS 205 A CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc1 A NE2 HIS 142 A HIS 204 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc2 A OD1 ASP 144 A ASP 206 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc3 A NE2 HIS 204 A HIS 266 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc4 B O21 PD2 . A PD2 301 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc5 B N1 PD2 . A PD2 301 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc6 C MN MN . A MN 302 1_555 D O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? # _chem_comp.formula 'C7 H5 N O4' _chem_comp.formula_weight 167.119 _chem_comp.id PD2 _chem_comp.mon_nstd_flag . _chem_comp.name 'PYRIDINE-2,4-DICARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O42 C41 PD2 doub 237 n n C41 O41 PD2 sing 238 n n C41 C4 PD2 sing 239 n n O41 H41 PD2 sing 240 n n C4 C5 PD2 doub 241 n y C4 C3 PD2 sing 242 n y C5 C6 PD2 sing 243 n y C5 H5 PD2 sing 244 n n C6 N1 PD2 doub 245 n y C6 H6 PD2 sing 246 n n C3 C2 PD2 doub 247 n y C3 H3 PD2 sing 248 n n C2 N1 PD2 sing 249 n y C2 C21 PD2 sing 250 n n C21 O21 PD2 doub 251 n n C21 O22 PD2 sing 252 n n O22 H22 PD2 sing 253 n n # _atom_sites.entry_id 4NRQ _atom_sites.fract_transf_matrix[1][1] 0.017616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017616 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PD2 A 1 301 1356 PD2 PD2 . C 3 MN A 1 302 352 MN MN . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 3 HOH HOH . D 4 HOH A 3 403 4 HOH HOH . D 4 HOH A 4 404 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O42 PD2 . . . B 2 12.193 4.303 14.287 1 32.99 ? O42 PD2 301 A 1 HETATM 2 C C41 PD2 . . . B 2 13.314 3.748 14.365 1 33.35 ? C41 PD2 301 A 1 HETATM 3 O O41 PD2 . . . B 2 13.465 2.518 14.175 1 35.35 ? O41 PD2 301 A 1 HETATM 4 C C4 PD2 . . . B 2 14.526 4.579 14.676 1 32.07 ? C4 PD2 301 A 1 HETATM 5 C C5 PD2 . . . B 2 15.752 4.19 14.151 1 32.86 ? C5 PD2 301 A 1 HETATM 6 C C6 PD2 . . . B 2 16.882 4.951 14.423 1 32.01 ? C6 PD2 301 A 1 HETATM 7 C C3 PD2 . . . B 2 14.454 5.73 15.467 1 31.1 ? C3 PD2 301 A 1 HETATM 8 C C2 PD2 . . . B 2 15.623 6.463 15.707 1 28.81 ? C2 PD2 301 A 1 HETATM 9 N N1 PD2 . . . B 2 16.801 6.055 15.18 1 30.89 ? N1 PD2 301 A 1 HETATM 10 C C21 PD2 . . . B 2 15.623 7.704 16.555 1 27.99 ? C21 PD2 301 A 1 HETATM 11 O O21 PD2 . . . B 2 16.726 8.252 16.789 1 31.12 ? O21 PD2 301 A 1 HETATM 12 O O22 PD2 . . . B 2 14.551 8.152 17.017 1 28.38 ? O22 PD2 301 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #