data_4NSL # _model_server_result.job_id wy5Fx0ReUsvxMszN2dLdBw _model_server_result.datetime_utc '2025-07-04 18:26:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nsl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 4NSL # _exptl.entry_id 4NSL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.178 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PENTANE-1,5-DIAMINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NSL _cell.length_a 87.708 _cell.length_b 102.297 _cell.length_c 198.399 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NSL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # _chem_comp.formula 'C5 H14 N2' _chem_comp.formula_weight 102.178 _chem_comp.id N2P _chem_comp.mon_nstd_flag . _chem_comp.name PENTANE-1,5-DIAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 N2P sing 237 n n C1 NE2 N2P sing 238 n n C1 H1C1 N2P sing 239 n n C1 H1C2 N2P sing 240 n n C2 C3 N2P sing 241 n n C2 H2C1 N2P sing 242 n n C2 H2C2 N2P sing 243 n n C3 C4 N2P sing 244 n n C3 H3C1 N2P sing 245 n n C3 H3C2 N2P sing 246 n n C4 C5 N2P sing 247 n n C4 H4C1 N2P sing 248 n n C4 H4C2 N2P sing 249 n n NE2 HE21 N2P sing 250 n n NE2 HE22 N2P sing 251 n n C5 N1 N2P sing 252 n n C5 H5C1 N2P sing 253 n n C5 H5C2 N2P sing 254 n n N1 H1N1 N2P sing 255 n n N1 H1N2 N2P sing 256 n n # _atom_sites.entry_id 4NSL _atom_sites.fract_transf_matrix[1][1] 0.011401 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009775 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00504 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 N2P B 1 501 2 N2P N2P . F 2 N2P C 1 501 1 N2P N2P . G 3 HOH A 1 501 5 HOH HOH . G 3 HOH A 2 502 7 HOH HOH . G 3 HOH A 3 503 18 HOH HOH . G 3 HOH A 4 504 25 HOH HOH . G 3 HOH A 5 505 27 HOH HOH . G 3 HOH A 6 506 28 HOH HOH . G 3 HOH A 7 507 31 HOH HOH . G 3 HOH A 8 508 35 HOH HOH . G 3 HOH A 9 509 38 HOH HOH . G 3 HOH A 10 510 39 HOH HOH . H 3 HOH B 1 601 8 HOH HOH . H 3 HOH B 2 602 11 HOH HOH . H 3 HOH B 3 603 12 HOH HOH . H 3 HOH B 4 604 13 HOH HOH . H 3 HOH B 5 605 15 HOH HOH . H 3 HOH B 6 606 19 HOH HOH . H 3 HOH B 7 607 20 HOH HOH . H 3 HOH B 8 608 26 HOH HOH . H 3 HOH B 9 609 30 HOH HOH . H 3 HOH B 10 610 32 HOH HOH . H 3 HOH B 11 611 33 HOH HOH . I 3 HOH C 1 601 2 HOH HOH . I 3 HOH C 2 602 9 HOH HOH . I 3 HOH C 3 603 10 HOH HOH . I 3 HOH C 4 604 14 HOH HOH . I 3 HOH C 5 605 16 HOH HOH . I 3 HOH C 6 606 17 HOH HOH . I 3 HOH C 7 607 29 HOH HOH . I 3 HOH C 8 608 34 HOH HOH . J 3 HOH D 1 501 1 HOH HOH . J 3 HOH D 2 502 3 HOH HOH . J 3 HOH D 3 503 4 HOH HOH . J 3 HOH D 4 504 6 HOH HOH . J 3 HOH D 5 505 21 HOH HOH . J 3 HOH D 6 506 22 HOH HOH . J 3 HOH D 7 507 23 HOH HOH . J 3 HOH D 8 508 24 HOH HOH . J 3 HOH D 9 509 36 HOH HOH . J 3 HOH D 10 510 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 N2P . . . F 2 -18.676 -3.84 -51.185 1 29.73 ? C1 N2P 501 C 1 HETATM 2 C C2 N2P . . . F 2 -18.047 -5.117 -50.616 1 30.81 ? C2 N2P 501 C 1 HETATM 3 C C3 N2P . . . F 2 -16.714 -5.435 -51.296 1 23.35 ? C3 N2P 501 C 1 HETATM 4 C C4 N2P . . . F 2 -16.075 -6.711 -50.703 1 27.32 ? C4 N2P 501 C 1 HETATM 5 N NE2 N2P . . . F 2 -19.903 -3.558 -50.425 1 26.76 ? NE2 N2P 501 C 1 HETATM 6 C C5 N2P . . . F 2 -15.846 -6.54 -49.199 1 27.87 ? C5 N2P 501 C 1 HETATM 7 N N1 N2P . . . F 2 -15.17 -7.75 -48.686 1 18.07 ? N1 N2P 501 C 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #