data_4NT8 # _model_server_result.job_id Dj2YfIjQeCtWiqlYGsS1gg _model_server_result.datetime_utc '2024-11-24 06:11:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nt8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":207}' # _entry.id 4NT8 # _exptl.entry_id 4NT8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 177.221 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-FORMYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4NT8 _cell.length_a 58.584 _cell.length_b 58.584 _cell.length_c 266.188 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 98 A GLY 98 1_555 A N CSD 99 A CSD 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C CSD 99 A CSD 99 1_555 A N LEU 100 A LEU 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale3 H C FME . A FME 207 1_555 I N ALA . A ALA 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? metalc ? metalc1 A OE2 GLU 37 A GLU 37 1_555 B CD CD . A CD 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc2 A OD2 CSD 99 A CSD 99 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc3 A SG CSD 99 A CSD 99 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc4 A O LEU 105 A LEU 105 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc5 A OE1 GLU 128 A GLU 128 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc6 A OE2 GLU 128 A GLU 128 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc7 A OE2 GLU 130 A GLU 130 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc8 A OE1 GLU 130 A GLU 130 1_555 D CD CD . A CD 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc9 A NE2 HIS 141 A HIS 141 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc10 A NE2 HIS 145 A HIS 145 1_555 C CD CD . A CD 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc11 A O GLY 148 A GLY 148 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc12 A OD2 ASP 164 A ASP 164 1_555 G NA NA . A NA 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc13 B CD CD . A CD 201 1_555 K O HOH . A HOH 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc14 B CD CD . A CD 201 1_555 K O HOH . A HOH 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc15 B CD CD . A CD 201 1_555 K O HOH . A HOH 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc16 C CD CD . A CD 202 1_555 H O1 FME . A FME 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc17 C CD CD . A CD 202 1_555 K O HOH . A HOH 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc18 D CD CD . A CD 203 1_555 K O HOH . A HOH 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc19 D CD CD . A CD 203 1_555 K O HOH . A HOH 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc20 F NA NA . A NA 205 1_555 K O HOH . A HOH 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc21 F NA NA . A NA 205 1_555 K O HOH . A HOH 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc22 F NA NA . A NA 205 1_555 K O HOH . A HOH 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc23 G NA NA . A NA 206 1_555 K O HOH . A HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc24 G NA NA . A NA 206 1_555 K O HOH . A HOH 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? # _chem_comp.formula 'C6 H11 N O3 S' _chem_comp.formula_weight 177.221 _chem_comp.id FME _chem_comp.mon_nstd_flag n _chem_comp.name N-FORMYLMETHIONINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CN FME sing 91 n n N CA FME sing 92 n n N H FME sing 93 n n CN O1 FME doub 94 n n CN HCN FME sing 95 n n CA CB FME sing 96 n n CA C FME sing 97 n n CA HA FME sing 98 n n CB CG FME sing 99 n n CB HB2 FME sing 100 n n CB HB3 FME sing 101 n n CG SD FME sing 102 n n CG HG2 FME sing 103 n n CG HG3 FME sing 104 n n SD CE FME sing 105 n n CE HE1 FME sing 106 n n CE HE2 FME sing 107 n n CE HE3 FME sing 108 n n C O FME doub 109 n n C OXT FME sing 110 n n OXT HXT FME sing 111 n n # _atom_sites.entry_id 4NT8 _atom_sites.fract_transf_matrix[1][1] 0.01707 _atom_sites.fract_transf_matrix[1][2] 0.009855 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01971 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 201 201 CD CD . C 2 CD A 1 202 202 CD CD . D 2 CD A 1 203 203 CD CD . E 3 ACT A 1 204 204 ACT ACT . F 4 NA A 1 205 205 NA NA . G 4 NA A 1 206 206 NA NA . H 5 FME A 1 207 207 FME FME . I 6 ALA A 1 208 208 ALA ALA . J 7 GOL A 1 209 209 GOL GOL . K 8 HOH A 1 301 301 HOH HOH . K 8 HOH A 2 302 302 HOH HOH . K 8 HOH A 3 303 303 HOH HOH . K 8 HOH A 4 304 304 HOH HOH . K 8 HOH A 5 305 305 HOH HOH . K 8 HOH A 6 306 306 HOH HOH . K 8 HOH A 7 307 307 HOH HOH . K 8 HOH A 8 308 308 HOH HOH . K 8 HOH A 9 309 309 HOH HOH . K 8 HOH A 10 310 310 HOH HOH . K 8 HOH A 11 311 311 HOH HOH . K 8 HOH A 12 312 312 HOH HOH . K 8 HOH A 13 313 313 HOH HOH . K 8 HOH A 14 314 314 HOH HOH . K 8 HOH A 15 315 315 HOH HOH . K 8 HOH A 16 316 316 HOH HOH . K 8 HOH A 17 317 317 HOH HOH . K 8 HOH A 18 318 318 HOH HOH . K 8 HOH A 19 319 319 HOH HOH . K 8 HOH A 20 320 320 HOH HOH . K 8 HOH A 21 321 321 HOH HOH . K 8 HOH A 22 322 322 HOH HOH . K 8 HOH A 23 323 323 HOH HOH . K 8 HOH A 24 324 324 HOH HOH . K 8 HOH A 25 325 325 HOH HOH . K 8 HOH A 26 326 326 HOH HOH . K 8 HOH A 27 327 327 HOH HOH . K 8 HOH A 28 328 328 HOH HOH . K 8 HOH A 29 329 329 HOH HOH . K 8 HOH A 30 330 330 HOH HOH . K 8 HOH A 31 331 331 HOH HOH . K 8 HOH A 32 332 332 HOH HOH . K 8 HOH A 33 333 333 HOH HOH . K 8 HOH A 34 334 334 HOH HOH . K 8 HOH A 35 335 335 HOH HOH . K 8 HOH A 36 336 336 HOH HOH . K 8 HOH A 37 337 337 HOH HOH . K 8 HOH A 38 338 338 HOH HOH . K 8 HOH A 39 339 339 HOH HOH . K 8 HOH A 40 340 340 HOH HOH . K 8 HOH A 41 341 341 HOH HOH . K 8 HOH A 42 342 342 HOH HOH . K 8 HOH A 43 343 343 HOH HOH . K 8 HOH A 44 344 344 HOH HOH . K 8 HOH A 45 345 345 HOH HOH . K 8 HOH A 46 346 346 HOH HOH . K 8 HOH A 47 347 347 HOH HOH . K 8 HOH A 48 348 348 HOH HOH . K 8 HOH A 49 349 349 HOH HOH . K 8 HOH A 50 350 350 HOH HOH . K 8 HOH A 51 351 351 HOH HOH . K 8 HOH A 52 352 352 HOH HOH . K 8 HOH A 53 353 353 HOH HOH . K 8 HOH A 54 354 354 HOH HOH . K 8 HOH A 55 355 355 HOH HOH . K 8 HOH A 56 356 356 HOH HOH . K 8 HOH A 57 357 357 HOH HOH . K 8 HOH A 58 358 358 HOH HOH . K 8 HOH A 59 359 359 HOH HOH . K 8 HOH A 60 360 360 HOH HOH . K 8 HOH A 61 361 361 HOH HOH . K 8 HOH A 62 362 362 HOH HOH . K 8 HOH A 63 363 363 HOH HOH . K 8 HOH A 64 364 364 HOH HOH . K 8 HOH A 65 365 365 HOH HOH . K 8 HOH A 66 366 366 HOH HOH . K 8 HOH A 67 367 367 HOH HOH . K 8 HOH A 68 368 368 HOH HOH . K 8 HOH A 69 369 369 HOH HOH . K 8 HOH A 70 370 370 HOH HOH . K 8 HOH A 71 371 371 HOH HOH . K 8 HOH A 72 372 372 HOH HOH . K 8 HOH A 73 373 373 HOH HOH . K 8 HOH A 74 374 374 HOH HOH . K 8 HOH A 75 375 375 HOH HOH . K 8 HOH A 76 376 376 HOH HOH . K 8 HOH A 77 377 377 HOH HOH . K 8 HOH A 78 378 378 HOH HOH . K 8 HOH A 79 379 379 HOH HOH . K 8 HOH A 80 380 380 HOH HOH . K 8 HOH A 81 381 381 HOH HOH . K 8 HOH A 82 382 382 HOH HOH . K 8 HOH A 83 383 383 HOH HOH . K 8 HOH A 84 384 384 HOH HOH . K 8 HOH A 85 385 385 HOH HOH . K 8 HOH A 86 386 386 HOH HOH . K 8 HOH A 87 387 387 HOH HOH . K 8 HOH A 88 388 388 HOH HOH . K 8 HOH A 89 389 389 HOH HOH . K 8 HOH A 90 390 390 HOH HOH . K 8 HOH A 91 391 391 HOH HOH . K 8 HOH A 92 392 392 HOH HOH . K 8 HOH A 93 393 393 HOH HOH . K 8 HOH A 94 394 394 HOH HOH . K 8 HOH A 95 395 395 HOH HOH . K 8 HOH A 96 396 396 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N FME . . . H 5 4.657 -15.281 2.071 1 36.17 ? N FME 207 A 1 HETATM 2 C CN FME . . . H 5 5.178 -14.342 2.943 1 43.32 ? CN FME 207 A 1 HETATM 3 O O1 FME . . . H 5 5.282 -14.302 4.192 1 33.99 ? O1 FME 207 A 1 HETATM 4 C CA FME . . . H 5 4.823 -14.778 0.681 1 33.55 ? CA FME 207 A 1 HETATM 5 C CB FME . . . H 5 5.963 -15.478 -0.084 1 30.68 ? CB FME 207 A 1 HETATM 6 C CG FME . . . H 5 6.541 -14.665 -1.248 1 29.8 ? CG FME 207 A 1 HETATM 7 S SD FME . . . H 5 7.981 -15.405 -1.999 1 29.1 ? SD FME 207 A 1 HETATM 8 C CE FME . . . H 5 7.308 -15.796 -3.579 1 30.29 ? CE FME 207 A 1 HETATM 9 C C FME . . . H 5 3.556 -14.709 -0.141 1 32.66 ? C FME 207 A 1 HETATM 10 O O FME . . . H 5 2.728 -15.618 -0.121 1 29.51 ? O FME 207 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #