data_4NTI
#
_model_server_result.job_id            gak11ySpCJuoo4ajamq4GQ 
_model_server_result.datetime_utc      '2025-03-03 02:42:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nti 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    4NTI 
#
_exptl.entry_id    4NTI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              561.774 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S,3R,4E)-2-(dodecanoylamino)-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4NTI 
_cell.length_a            118.118 
_cell.length_b            118.118 
_cell.length_c            152.378 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NTI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,K 1 1 
B,F,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
_chem_comp.formula           'C30 H60 N O6 P' 
_chem_comp.formula_weight    561.774 
_chem_comp.id                1PZ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S,3R,4E)-2-(dodecanoylamino)-3-hydroxyoctadec-4-en-1-yl dihydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAS CAF 1PZ sing 1 n n 
CAF CAG 1PZ sing 2 n n 
CBL CBK 1PZ sing 3 n n 
CAG CAH 1PZ sing 4 n n 
CAH CAI 1PZ sing 5 n n 
CBK CBJ 1PZ sing 6 n n 
CBJ CBI 1PZ sing 7 n n 
CAI CAJ 1PZ sing 8 n n 
CAJ CAK 1PZ sing 9 n n 
CBI CBH 1PZ sing 10 n n 
CBH CBG 1PZ sing 11 n n 
CAK CAL 1PZ sing 12 n n 
CAL CAM 1PZ sing 13 n n 
CBG CBF 1PZ sing 14 n n 
CBF CBE 1PZ sing 15 n n 
CAM CAN 1PZ sing 16 n n 
CAN CAO 1PZ sing 17 n n 
CBE CBD 1PZ sing 18 n n 
CBD CBC 1PZ sing 19 n n 
CAO CAP 1PZ sing 20 n n 
CAP CAQ 1PZ sing 21 n n 
CAQ CAE 1PZ sing 22 n n 
CBC CAT 1PZ sing 23 n n 
CAT CAU 1PZ sing 24 n n 
OAV CAU 1PZ doub 25 n n 
CAE CAD 1PZ doub 26 e n 
CAU NAW 1PZ sing 27 n n 
CAD CAC 1PZ sing 28 n n 
NAW CAB 1PZ sing 29 n n 
CAC CAB 1PZ sing 30 n n 
CAC OAR 1PZ sing 31 n n 
CAB CAA 1PZ sing 32 n n 
CAA OBB 1PZ sing 33 n n 
OBB PAX 1PZ sing 34 n n 
OAZ PAX 1PZ doub 35 n n 
PAX OAY 1PZ sing 36 n n 
PAX OBA 1PZ sing 37 n n 
CAS H1 1PZ sing 38 n n 
CAS H2 1PZ sing 39 n n 
CAS H3 1PZ sing 40 n n 
CAF H4 1PZ sing 41 n n 
CAF H5 1PZ sing 42 n n 
CAG H6 1PZ sing 43 n n 
CAG H7 1PZ sing 44 n n 
CAH H8 1PZ sing 45 n n 
CAH H9 1PZ sing 46 n n 
CAI H10 1PZ sing 47 n n 
CAI H11 1PZ sing 48 n n 
CAJ H12 1PZ sing 49 n n 
CAJ H13 1PZ sing 50 n n 
CAK H14 1PZ sing 51 n n 
CAK H15 1PZ sing 52 n n 
CAL H16 1PZ sing 53 n n 
CAL H17 1PZ sing 54 n n 
CAM H18 1PZ sing 55 n n 
CAM H19 1PZ sing 56 n n 
CAN H20 1PZ sing 57 n n 
CAN H21 1PZ sing 58 n n 
CAO H22 1PZ sing 59 n n 
CAO H23 1PZ sing 60 n n 
CAP H24 1PZ sing 61 n n 
CAP H25 1PZ sing 62 n n 
CAQ H26 1PZ sing 63 n n 
CAQ H27 1PZ sing 64 n n 
CAE H28 1PZ sing 65 n n 
CAD H30 1PZ sing 66 n n 
CAC H32 1PZ sing 67 n n 
OAR H33 1PZ sing 68 n n 
CAB H34 1PZ sing 69 n n 
CAA H35 1PZ sing 70 n n 
CAA H36 1PZ sing 71 n n 
OBA H37 1PZ sing 72 n n 
OAY H38 1PZ sing 73 n n 
NAW H39 1PZ sing 74 n n 
CAT H40 1PZ sing 75 n n 
CAT H41 1PZ sing 76 n n 
CBC H42 1PZ sing 77 n n 
CBC H43 1PZ sing 78 n n 
CBD H44 1PZ sing 79 n n 
CBD H45 1PZ sing 80 n n 
CBE H46 1PZ sing 81 n n 
CBE H47 1PZ sing 82 n n 
CBF H48 1PZ sing 83 n n 
CBF H49 1PZ sing 84 n n 
CBG H50 1PZ sing 85 n n 
CBG H51 1PZ sing 86 n n 
CBH H52 1PZ sing 87 n n 
CBH H53 1PZ sing 88 n n 
CBI H54 1PZ sing 89 n n 
CBI H55 1PZ sing 90 n n 
CBJ H56 1PZ sing 91 n n 
CBJ H57 1PZ sing 92 n n 
CBK H58 1PZ sing 93 n n 
CBK H59 1PZ sing 94 n n 
CBL H60 1PZ sing 95 n n 
CBL H61 1PZ sing 96 n n 
CBL H62 1PZ sing 97 n n 
#
_atom_sites.entry_id                     4NTI 
_atom_sites.fract_transf_matrix[1][1]    0.008466 
_atom_sites.fract_transf_matrix[1][2]    0.004888 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009776 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006563 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 1PZ A 1 301 1 1PZ 1PZ . 
D 2 1PZ A 1 302 3 1PZ 1PZ . 
E 2 1PZ A 1 303 4 1PZ 1PZ . 
F 2 1PZ B 1 301 2 1PZ 1PZ . 
G 3 PEG B 1 302 1 PEG PEG . 
H 3 PEG B 1 303 1 PEG PEG . 
I 3 PEG B 1 304 1 PEG PEG . 
J 3 PEG B 1 305 1 PEG PEG . 
K 4 HOH A 1 401 2 HOH HOH . 
K 4 HOH A 2 402 3 HOH HOH . 
K 4 HOH A 3 403 5 HOH HOH . 
K 4 HOH A 4 404 8 HOH HOH . 
K 4 HOH A 5 405 10 HOH HOH . 
K 4 HOH A 6 406 11 HOH HOH . 
K 4 HOH A 7 407 12 HOH HOH . 
K 4 HOH A 8 408 17 HOH HOH . 
K 4 HOH A 9 409 20 HOH HOH . 
K 4 HOH A 10 410 23 HOH HOH . 
K 4 HOH A 11 411 25 HOH HOH . 
K 4 HOH A 12 412 27 HOH HOH . 
K 4 HOH A 13 413 31 HOH HOH . 
K 4 HOH A 14 414 33 HOH HOH . 
K 4 HOH A 15 415 36 HOH HOH . 
K 4 HOH A 16 416 37 HOH HOH . 
K 4 HOH A 17 417 40 HOH HOH . 
K 4 HOH A 18 418 41 HOH HOH . 
K 4 HOH A 19 419 42 HOH HOH . 
K 4 HOH A 20 420 43 HOH HOH . 
K 4 HOH A 21 421 45 HOH HOH . 
L 4 HOH B 1 401 1 HOH HOH . 
L 4 HOH B 2 402 4 HOH HOH . 
L 4 HOH B 3 403 6 HOH HOH . 
L 4 HOH B 4 404 7 HOH HOH . 
L 4 HOH B 5 405 9 HOH HOH . 
L 4 HOH B 6 406 13 HOH HOH . 
L 4 HOH B 7 407 14 HOH HOH . 
L 4 HOH B 8 408 15 HOH HOH . 
L 4 HOH B 9 409 16 HOH HOH . 
L 4 HOH B 10 410 18 HOH HOH . 
L 4 HOH B 11 411 19 HOH HOH . 
L 4 HOH B 12 412 21 HOH HOH . 
L 4 HOH B 13 413 22 HOH HOH . 
L 4 HOH B 14 414 24 HOH HOH . 
L 4 HOH B 15 415 26 HOH HOH . 
L 4 HOH B 16 416 28 HOH HOH . 
L 4 HOH B 17 417 29 HOH HOH . 
L 4 HOH B 18 418 30 HOH HOH . 
L 4 HOH B 19 419 32 HOH HOH . 
L 4 HOH B 20 420 34 HOH HOH . 
L 4 HOH B 21 421 35 HOH HOH . 
L 4 HOH B 22 422 38 HOH HOH . 
L 4 HOH B 23 423 39 HOH HOH . 
L 4 HOH B 24 424 44 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAS 1PZ . . . D 2 -75.928 64.283 4.87 1 67.33 ? CAS 1PZ 302 A 1 
HETATM 2 C CAF 1PZ . . . D 2 -76.717 63.026 5.254 1 84.86 ? CAF 1PZ 302 A 1 
HETATM 3 C CAG 1PZ . . . D 2 -77.973 63.448 6.038 1 95.04 ? CAG 1PZ 302 A 1 
HETATM 4 C CAH 1PZ . . . D 2 -78.554 62.22 6.769 1 104.92 ? CAH 1PZ 302 A 1 
HETATM 5 C CAI 1PZ . . . D 2 -78.434 62.461 8.29 1 110.83 ? CAI 1PZ 302 A 1 
HETATM 6 C CAJ 1PZ . . . D 2 -79.446 61.572 9.015 1 112.79 ? CAJ 1PZ 302 A 1 
HETATM 7 C CAK 1PZ . . . D 2 -78.874 60.142 9.093 1 111.29 ? CAK 1PZ 302 A 1 
HETATM 8 C CAL 1PZ . . . D 2 -79.148 59.56 10.499 1 110 ? CAL 1PZ 302 A 1 
HETATM 9 C CAM 1PZ . . . D 2 -77.786 59.239 11.163 1 110.63 ? CAM 1PZ 302 A 1 
HETATM 10 C CAN 1PZ . . . D 2 -77.937 58.057 12.173 1 102.64 ? CAN 1PZ 302 A 1 
HETATM 11 C CAO 1PZ . . . D 2 -76.726 58.063 13.14 1 97.92 ? CAO 1PZ 302 A 1 
HETATM 12 C CAP 1PZ . . . D 2 -75.505 57.287 12.514 1 76.65 ? CAP 1PZ 302 A 1 
HETATM 13 C CAQ 1PZ . . . D 2 -75.031 56.195 13.508 1 53.85 ? CAQ 1PZ 302 A 1 
HETATM 14 C CAE 1PZ . . . D 2 -73.649 56.513 14.037 1 71.9 ? CAE 1PZ 302 A 1 
HETATM 15 C CAD 1PZ . . . D 2 -72.581 55.652 13.81 1 86.14 ? CAD 1PZ 302 A 1 
HETATM 16 C CAC 1PZ . . . D 2 -71.192 55.897 14.438 1 104.08 ? CAC 1PZ 302 A 1 
HETATM 17 O OAR 1PZ . . . D 2 -70.577 54.695 14.751 1 104.93 ? OAR 1PZ 302 A 1 
HETATM 18 C CAB 1PZ . . . D 2 -70.333 56.652 13.444 1 110.68 ? CAB 1PZ 302 A 1 
HETATM 19 C CAA 1PZ . . . D 2 -68.923 56.78 13.992 1 112.87 ? CAA 1PZ 302 A 1 
HETATM 20 O OBB 1PZ . . . D 2 -68.232 55.552 13.794 1 120.25 ? OBB 1PZ 302 A 1 
HETATM 21 P PAX 1PZ . . . D 2 -67.683 55.121 12.356 1 179.43 ? PAX 1PZ 302 A 1 
HETATM 22 O OAZ 1PZ . . . D 2 -68.202 56.078 11.345 1 181.78 ? OAZ 1PZ 302 A 1 
HETATM 23 O OBA 1PZ . . . D 2 -68.378 53.725 12.044 1 63.21 ? OBA 1PZ 302 A 1 
HETATM 24 O OAY 1PZ . . . D 2 -66.206 55.04 12.307 1 168.63 ? OAY 1PZ 302 A 1 
HETATM 25 N NAW 1PZ . . . D 2 -70.936 57.935 13.196 1 102.65 ? NAW 1PZ 302 A 1 
HETATM 26 C CAU 1PZ . . . D 2 -70.392 58.868 12.326 1 101.61 ? CAU 1PZ 302 A 1 
HETATM 27 O OAV 1PZ . . . D 2 -69.182 58.761 11.733 1 109.02 ? OAV 1PZ 302 A 1 
HETATM 28 C CAT 1PZ . . . D 2 -71.285 60.113 12.059 1 88.76 ? CAT 1PZ 302 A 1 
HETATM 29 C CBC 1PZ . . . D 2 -72.79 59.695 12.034 1 108.19 ? CBC 1PZ 302 A 1 
HETATM 30 C CBD 1PZ . . . D 2 -73.515 60.552 11.01 1 111.71 ? CBD 1PZ 302 A 1 
HETATM 31 C CBE 1PZ . . . D 2 -74.798 61.162 11.646 1 70.82 ? CBE 1PZ 302 A 1 
HETATM 32 C CBF 1PZ . . . D 2 -75.58 61.969 10.584 1 68.67 ? CBF 1PZ 302 A 1 
HETATM 33 C CBG 1PZ . . . D 2 -74.602 62.85 9.754 1 75.97 ? CBG 1PZ 302 A 1 
HETATM 34 C CBH 1PZ . . . D 2 -75.264 64.216 9.478 1 80.11 ? CBH 1PZ 302 A 1 
HETATM 35 C CBI 1PZ . . . D 2 -74.269 65.323 9.87 1 76.48 ? CBI 1PZ 302 A 1 
HETATM 36 C CBJ 1PZ . . . D 2 -74.901 66.688 9.603 1 69.6 ? CBJ 1PZ 302 A 1 
HETATM 37 C CBK 1PZ . . . D 2 -73.861 67.77 9.882 1 66.8 ? CBK 1PZ 302 A 1 
HETATM 38 C CBL 1PZ . . . D 2 -74.49 69.132 9.681 1 68.08 ? CBL 1PZ 302 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           38 
#