data_4NTN # _model_server_result.job_id ouAbBc-L2KtYRr1wMRTr1g _model_server_result.datetime_utc '2024-11-15 12:53:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ntn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":201}' # _entry.id 4NTN # _exptl.entry_id 4NTN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NTN _cell.length_a 107.08 _cell.length_b 111.76 _cell.length_c 161.44 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NTN _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 35 A PHE 35 1_555 A N MSE 36 A MSE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 36 A MSE 36 1_555 A N VAL 37 A VAL 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C VAL 106 A VAL 106 1_555 A N MSE 107 A MSE 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 107 A MSE 107 1_555 A N VAL 108 A VAL 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 B C PHE 35 B PHE 35 1_555 B N MSE 36 B MSE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 B C MSE 36 B MSE 36 1_555 B N VAL 37 B VAL 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 B C VAL 106 B VAL 106 1_555 B N MSE 107 B MSE 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 B C MSE 107 B MSE 107 1_555 B N VAL 108 B VAL 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 C C PHE 35 C PHE 35 1_555 C N MSE 36 C MSE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 C C MSE 36 C MSE 36 1_555 C N VAL 37 C VAL 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 C C VAL 106 C VAL 106 1_555 C N MSE 107 C MSE 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale12 C C MSE 107 C MSE 107 1_555 C N VAL 108 C VAL 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 D C PHE 35 D PHE 35 1_555 D N MSE 36 D MSE 36 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.333 ? covale ? covale14 D C PHE 35 D PHE 35 1_555 D N MSE 36 D MSE 36 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.331 ? covale ? covale15 D C MSE 36 D MSE 36 1_555 D N VAL 37 D VAL 37 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale16 D C MSE 36 D MSE 36 1_555 D N VAL 37 D VAL 37 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 D C VAL 106 D VAL 106 1_555 D N MSE 107 D MSE 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale18 D C MSE 107 D MSE 107 1_555 D N VAL 108 D VAL 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale19 E C MSE 2 E MSE 2 1_555 E N SER 3 E SER 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale20 E C PHE 35 E PHE 35 1_555 E N MSE 36 E MSE 36 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.328 ? covale ? covale21 E C PHE 35 E PHE 35 1_555 E N MSE 36 E MSE 36 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.332 ? covale ? covale22 E C MSE 36 E MSE 36 1_555 E N VAL 37 E VAL 37 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale23 E C MSE 36 E MSE 36 1_555 E N VAL 37 E VAL 37 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale24 E C VAL 106 E VAL 106 1_555 E N MSE 107 E MSE 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale25 E C MSE 107 E MSE 107 1_555 E N VAL 108 E VAL 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale26 F C PHE 35 F PHE 35 1_555 F N MSE 36 F MSE 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale27 F C MSE 36 F MSE 36 1_555 F N VAL 37 F VAL 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale28 F C VAL 106 F VAL 106 1_555 F N MSE 107 F MSE 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale29 F C MSE 107 F MSE 107 1_555 F N VAL 108 F VAL 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 I ZN ZN . B ZN 201 1_555 O O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc2 F NE2 HIS 31 F HIS 31 1_555 M ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc3 G ZN ZN . A ZN 201 1_555 N O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc4 A NE2 HIS 16 A HIS 16 1_555 G ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc5 E NE2 HIS 16 E HIS 16 1_555 L ZN ZN . E ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc6 C NE2 HIS 31 C HIS 31 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc7 B NE2 HIS 16 B HIS 16 1_555 I ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc8 L ZN ZN . E ZN 201 1_555 R O HOH . E HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc9 A NE2 HIS 31 A HIS 31 1_555 G ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc10 B NE2 HIS 31 B HIS 31 1_555 I ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc11 J ZN ZN . C ZN 201 1_555 P O HOH . C HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc12 E NE2 HIS 31 E HIS 31 1_555 L ZN ZN . E ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc13 C NE2 HIS 16 C HIS 16 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc14 D NE2 HIS 16 D HIS 16 1_555 K ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc15 F NE2 HIS 16 F HIS 16 1_555 M ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc16 D NE2 HIS 31 D HIS 31 1_555 K ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc17 E NE2 HIS 33 E HIS 33 1_555 L ZN ZN . E ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc18 A NE2 HIS 33 A HIS 33 1_555 G ZN ZN . A ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc19 K ZN ZN . D ZN 201 1_555 Q O HOH . D HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc20 D NE2 HIS 33 D HIS 33 1_555 K ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc21 B NE2 HIS 33 B HIS 33 1_555 I ZN ZN . B ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc22 C NE2 HIS 33 C HIS 33 1_555 J ZN ZN . C ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc23 M ZN ZN . F ZN 201 1_555 S O HOH . F HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc24 F NE2 HIS 33 F HIS 33 1_555 M ZN ZN . F ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4NTN _atom_sites.fract_transf_matrix[1][1] 0.009339 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008948 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 ZN A 1 201 1 ZN ZN . H 3 FMT A 1 202 1 FMT FMT . I 2 ZN B 1 201 2 ZN ZN . J 2 ZN C 1 201 3 ZN ZN . K 2 ZN D 1 201 6 ZN ZN . L 2 ZN E 1 201 4 ZN ZN . M 2 ZN F 1 201 5 ZN ZN . N 4 HOH A 1 301 1 HOH HOH . N 4 HOH A 2 302 2 HOH HOH . N 4 HOH A 3 303 3 HOH HOH . N 4 HOH A 4 304 4 HOH HOH . N 4 HOH A 5 305 33 HOH HOH . N 4 HOH A 6 306 58 HOH HOH . N 4 HOH A 7 307 69 HOH HOH . N 4 HOH A 8 308 75 HOH HOH . N 4 HOH A 9 309 82 HOH HOH . N 4 HOH A 10 310 87 HOH HOH . N 4 HOH A 11 311 88 HOH HOH . N 4 HOH A 12 312 91 HOH HOH . N 4 HOH A 13 313 99 HOH HOH . N 4 HOH A 14 314 100 HOH HOH . N 4 HOH A 15 315 115 HOH HOH . N 4 HOH A 16 316 123 HOH HOH . N 4 HOH A 17 317 124 HOH HOH . N 4 HOH A 18 318 129 HOH HOH . O 4 HOH B 1 301 7 HOH HOH . O 4 HOH B 2 302 8 HOH HOH . O 4 HOH B 3 303 13 HOH HOH . O 4 HOH B 4 304 21 HOH HOH . O 4 HOH B 5 305 22 HOH HOH . O 4 HOH B 6 306 23 HOH HOH . O 4 HOH B 7 307 35 HOH HOH . O 4 HOH B 8 308 37 HOH HOH . O 4 HOH B 9 309 41 HOH HOH . O 4 HOH B 10 310 43 HOH HOH . O 4 HOH B 11 311 53 HOH HOH . O 4 HOH B 12 312 57 HOH HOH . O 4 HOH B 13 313 59 HOH HOH . O 4 HOH B 14 314 62 HOH HOH . O 4 HOH B 15 315 77 HOH HOH . O 4 HOH B 16 316 81 HOH HOH . O 4 HOH B 17 317 83 HOH HOH . O 4 HOH B 18 318 84 HOH HOH . O 4 HOH B 19 319 89 HOH HOH . O 4 HOH B 20 320 96 HOH HOH . O 4 HOH B 21 321 97 HOH HOH . O 4 HOH B 22 322 98 HOH HOH . O 4 HOH B 23 323 101 HOH HOH . O 4 HOH B 24 324 104 HOH HOH . O 4 HOH B 25 325 107 HOH HOH . O 4 HOH B 26 326 108 HOH HOH . O 4 HOH B 27 327 109 HOH HOH . O 4 HOH B 28 328 110 HOH HOH . O 4 HOH B 29 329 111 HOH HOH . O 4 HOH B 30 330 118 HOH HOH . O 4 HOH B 31 331 120 HOH HOH . P 4 HOH C 1 301 5 HOH HOH . P 4 HOH C 2 302 14 HOH HOH . P 4 HOH C 3 303 17 HOH HOH . P 4 HOH C 4 304 20 HOH HOH . P 4 HOH C 5 305 31 HOH HOH . P 4 HOH C 6 306 39 HOH HOH . P 4 HOH C 7 307 48 HOH HOH . P 4 HOH C 8 308 63 HOH HOH . P 4 HOH C 9 309 64 HOH HOH . P 4 HOH C 10 310 65 HOH HOH . P 4 HOH C 11 311 66 HOH HOH . P 4 HOH C 12 312 70 HOH HOH . P 4 HOH C 13 313 76 HOH HOH . P 4 HOH C 14 314 85 HOH HOH . P 4 HOH C 15 315 103 HOH HOH . P 4 HOH C 16 316 122 HOH HOH . P 4 HOH C 17 317 126 HOH HOH . P 4 HOH C 18 318 128 HOH HOH . Q 4 HOH D 1 301 9 HOH HOH . Q 4 HOH D 2 302 12 HOH HOH . Q 4 HOH D 3 303 24 HOH HOH . Q 4 HOH D 4 304 26 HOH HOH . Q 4 HOH D 5 305 27 HOH HOH . Q 4 HOH D 6 306 30 HOH HOH . Q 4 HOH D 7 307 40 HOH HOH . Q 4 HOH D 8 308 42 HOH HOH . Q 4 HOH D 9 309 44 HOH HOH . Q 4 HOH D 10 310 45 HOH HOH . Q 4 HOH D 11 311 46 HOH HOH . Q 4 HOH D 12 312 72 HOH HOH . Q 4 HOH D 13 313 73 HOH HOH . Q 4 HOH D 14 314 74 HOH HOH . Q 4 HOH D 15 315 78 HOH HOH . Q 4 HOH D 16 316 116 HOH HOH . Q 4 HOH D 17 317 117 HOH HOH . Q 4 HOH D 18 318 119 HOH HOH . Q 4 HOH D 19 319 121 HOH HOH . R 4 HOH E 1 301 10 HOH HOH . R 4 HOH E 2 302 15 HOH HOH . R 4 HOH E 3 303 18 HOH HOH . R 4 HOH E 4 304 28 HOH HOH . R 4 HOH E 5 305 29 HOH HOH . R 4 HOH E 6 306 32 HOH HOH . R 4 HOH E 7 307 36 HOH HOH . R 4 HOH E 8 308 38 HOH HOH . R 4 HOH E 9 309 49 HOH HOH . R 4 HOH E 10 310 50 HOH HOH . R 4 HOH E 11 311 54 HOH HOH . R 4 HOH E 12 312 60 HOH HOH . R 4 HOH E 13 313 61 HOH HOH . R 4 HOH E 14 314 68 HOH HOH . R 4 HOH E 15 315 71 HOH HOH . R 4 HOH E 16 316 79 HOH HOH . R 4 HOH E 17 317 80 HOH HOH . R 4 HOH E 18 318 86 HOH HOH . R 4 HOH E 19 319 92 HOH HOH . R 4 HOH E 20 320 102 HOH HOH . R 4 HOH E 21 321 105 HOH HOH . R 4 HOH E 22 322 112 HOH HOH . R 4 HOH E 23 323 113 HOH HOH . R 4 HOH E 24 324 125 HOH HOH . S 4 HOH F 1 301 11 HOH HOH . S 4 HOH F 2 302 16 HOH HOH . S 4 HOH F 3 303 19 HOH HOH . S 4 HOH F 4 304 25 HOH HOH . S 4 HOH F 5 305 34 HOH HOH . S 4 HOH F 6 306 47 HOH HOH . S 4 HOH F 7 307 51 HOH HOH . S 4 HOH F 8 308 52 HOH HOH . S 4 HOH F 9 309 55 HOH HOH . S 4 HOH F 10 310 56 HOH HOH . S 4 HOH F 11 311 90 HOH HOH . S 4 HOH F 12 312 93 HOH HOH . S 4 HOH F 13 313 94 HOH HOH . S 4 HOH F 14 314 95 HOH HOH . S 4 HOH F 15 315 106 HOH HOH . S 4 HOH F 16 316 114 HOH HOH . S 4 HOH F 17 317 127 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 2 _atom_site.Cartn_x -3.795 _atom_site.Cartn_y 30.51 _atom_site.Cartn_z 12.317 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 201 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #