data_4NTY # _model_server_result.job_id GG5qm5QWCCTjOY25GLhruw _model_server_result.datetime_utc '2024-11-04 22:47:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nty # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":503}' # _entry.id 4NTY # _exptl.entry_id 4NTY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 132.905 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CESIUM ION' _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4NTY _cell.length_a 151.53 _cell.length_b 151.53 _cell.length_c 123.83 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NTY _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 81 A CYS 94 1_555 A SG CYS 182 A CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 160 A CYS 173 1_555 A SG CYS 167 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? disulf ? disulf3 A SG CYS 278 A CYS 291 1_555 A SG CYS 353 A CYS 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 A SG CYS 296 A CYS 309 1_555 A SG CYS 349 A CYS 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf5 A SG CYS 300 A CYS 313 1_555 A SG CYS 347 A CYS 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf6 A SG CYS 309 A CYS 322 1_555 A SG CYS 331 A CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf7 A SG CYS 311 A CYS 324 1_555 A SG CYS 323 A CYS 336 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf8 B SG CYS 7 B CYS 7 1_555 B SG CYS 58 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf9 B SG CYS 17 B CYS 17 1_555 B SG CYS 41 B CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf10 B SG CYS 33 B CYS 33 1_555 B SG CYS 54 B CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf11 C SG CYS 11 C CYS 11 1_555 C SG CYS 70 C CYS 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf12 C SG CYS 25 C CYS 25 1_555 C SG CYS 118 C CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf13 C SG CYS 27 C CYS 27 1_555 C SG CYS 43 C CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf14 C SG CYS 42 C CYS 42 1_555 C SG CYS 100 C CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf15 C SG CYS 49 C CYS 49 1_555 C SG CYS 93 C CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf16 C SG CYS 59 C CYS 59 1_555 C SG CYS 86 C CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf17 C SG CYS 79 C CYS 79 1_555 C SG CYS 91 C CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? covale ? covale1 B C PCA 1 B PCA 1 1_555 B N ILE 2 B ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 S CS CS . C CS 201 1_555 W O HOH . C HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.782 ? metalc ? metalc2 G CS CS . A CS 504 1_555 U O HOH . A HOH 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc3 Q CS CS . B CS 101 1_555 V O HOH . B HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc4 A ND2 ASN 310 A ASN 323 1_555 K CS CS . A CS 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? metalc ? metalc5 B O GLN 45 B GLN 45 1_555 Q CS CS . B CS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc6 J CS CS . A CS 507 1_555 U O HOH . A HOH 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? metalc ? metalc7 T CS CS . C CS 202 1_555 W O HOH . C HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.137 ? metalc ? metalc8 A O GLU 170 A GLU 183 1_555 M CS CS . A CS 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.143 ? metalc ? metalc9 C OD1 ASN 3 C ASN 3 1_555 K CS CS . A CS 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.146 ? metalc ? metalc10 A O GLU 286 A GLU 299 1_555 F CS CS . A CS 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.181 ? metalc ? metalc11 C O SER 80 C SER 80 1_555 T CS CS . C CS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.198 ? metalc ? metalc12 C O PHE 68 C PHE 68 1_555 S CS CS . C CS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.28 ? metalc ? metalc13 A OH TYR 110 A TYR 123 1_555 H CS CS . A CS 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.286 ? metalc ? metalc14 A O LYS 360 A LYS 373 1_555 J CS CS . A CS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.294 ? metalc ? metalc15 A O VAL 306 A VAL 319 1_555 K CS CS . A CS 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.297 ? metalc ? metalc16 A O THR 227 A THR 240 1_555 G CS CS . A CS 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.346 ? metalc ? metalc17 G CS CS . A CS 504 1_555 U O HOH . A HOH 665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.377 ? metalc ? metalc18 G CS CS . A CS 504 1_555 U O HOH . A HOH 666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.394 ? metalc ? metalc19 L CS CS . A CS 509 1_555 U O HOH . A HOH 628 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.405 ? metalc ? metalc20 G CS CS . A CS 504 1_555 P O2 PE4 . A PE4 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.425 ? metalc ? metalc21 S CS CS . C CS 201 1_555 V O HOH . B HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.444 ? metalc ? metalc22 A O LEU 362 A LEU 375 1_555 I CS CS . A CS 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.447 ? metalc ? metalc23 L CS CS . A CS 509 1_555 U O HOH . A HOH 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.452 ? metalc ? metalc24 A O PHE 172 A PHE 185 1_555 M CS CS . A CS 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.476 ? # _chem_comp.formula 'Cs 1' _chem_comp.formula_weight 132.905 _chem_comp.id CS _chem_comp.mon_nstd_flag . _chem_comp.name 'CESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4NTY _atom_sites.fract_transf_matrix[1][1] 0.006599 _atom_sites.fract_transf_matrix[1][2] 0.00381 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00762 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008076 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CS A 1 501 1 CS CS . E 4 CS A 1 502 2 CS CS . F 4 CS A 1 503 5 CS CS . G 4 CS A 1 504 6 CS CS . H 4 CS A 1 505 7 CS CS . I 4 CS A 1 506 8 CS CS . J 4 CS A 1 507 9 CS CS . K 4 CS A 1 508 10 CS CS . L 4 CS A 1 509 12 CS CS . M 4 CS A 1 510 14 CS CS . N 4 CS A 1 511 15 CS CS . O 5 CL A 1 512 16 CL CL . P 6 PE4 A 1 513 17 PE4 PE4 . Q 4 CS B 1 101 3 CS CS . R 4 CS B 1 102 13 CS CS . S 4 CS C 1 201 4 CS CS . T 4 CS C 1 202 11 CS CS . U 7 HOH A 1 601 1 HOH HOH . U 7 HOH A 2 602 2 HOH HOH . U 7 HOH A 3 603 4 HOH HOH . U 7 HOH A 4 604 5 HOH HOH . U 7 HOH A 5 605 6 HOH HOH . U 7 HOH A 6 606 7 HOH HOH . U 7 HOH A 7 607 8 HOH HOH . U 7 HOH A 8 608 9 HOH HOH . U 7 HOH A 9 609 10 HOH HOH . U 7 HOH A 10 610 11 HOH HOH . U 7 HOH A 11 611 12 HOH HOH . U 7 HOH A 12 612 13 HOH HOH . U 7 HOH A 13 613 14 HOH HOH . U 7 HOH A 14 614 15 HOH HOH . U 7 HOH A 15 615 16 HOH HOH . U 7 HOH A 16 616 17 HOH HOH . U 7 HOH A 17 617 18 HOH HOH . U 7 HOH A 18 618 19 HOH HOH . U 7 HOH A 19 619 20 HOH HOH . U 7 HOH A 20 620 22 HOH HOH . U 7 HOH A 21 621 23 HOH HOH . U 7 HOH A 22 622 24 HOH HOH . U 7 HOH A 23 623 25 HOH HOH . U 7 HOH A 24 624 26 HOH HOH . U 7 HOH A 25 625 27 HOH HOH . U 7 HOH A 26 626 28 HOH HOH . U 7 HOH A 27 627 30 HOH HOH . U 7 HOH A 28 628 32 HOH HOH . U 7 HOH A 29 629 33 HOH HOH . U 7 HOH A 30 630 34 HOH HOH . U 7 HOH A 31 631 35 HOH HOH . U 7 HOH A 32 632 36 HOH HOH . U 7 HOH A 33 633 37 HOH HOH . U 7 HOH A 34 634 38 HOH HOH . U 7 HOH A 35 635 39 HOH HOH . U 7 HOH A 36 636 40 HOH HOH . U 7 HOH A 37 637 41 HOH HOH . U 7 HOH A 38 638 42 HOH HOH . U 7 HOH A 39 639 43 HOH HOH . U 7 HOH A 40 640 44 HOH HOH . U 7 HOH A 41 641 46 HOH HOH . U 7 HOH A 42 642 47 HOH HOH . U 7 HOH A 43 643 48 HOH HOH . U 7 HOH A 44 644 49 HOH HOH . U 7 HOH A 45 645 50 HOH HOH . U 7 HOH A 46 646 51 HOH HOH . U 7 HOH A 47 647 52 HOH HOH . U 7 HOH A 48 648 55 HOH HOH . U 7 HOH A 49 649 57 HOH HOH . U 7 HOH A 50 650 59 HOH HOH . U 7 HOH A 51 651 61 HOH HOH . U 7 HOH A 52 652 62 HOH HOH . U 7 HOH A 53 653 63 HOH HOH . U 7 HOH A 54 654 66 HOH HOH . U 7 HOH A 55 655 67 HOH HOH . U 7 HOH A 56 656 68 HOH HOH . U 7 HOH A 57 657 69 HOH HOH . U 7 HOH A 58 658 71 HOH HOH . U 7 HOH A 59 659 72 HOH HOH . U 7 HOH A 60 660 73 HOH HOH . U 7 HOH A 61 661 74 HOH HOH . U 7 HOH A 62 662 75 HOH HOH . U 7 HOH A 63 663 77 HOH HOH . U 7 HOH A 64 664 78 HOH HOH . U 7 HOH A 65 665 79 HOH HOH . U 7 HOH A 66 666 80 HOH HOH . U 7 HOH A 67 667 81 HOH HOH . U 7 HOH A 68 668 82 HOH HOH . U 7 HOH A 69 669 87 HOH HOH . U 7 HOH A 70 670 88 HOH HOH . V 7 HOH B 1 201 29 HOH HOH . V 7 HOH B 2 202 31 HOH HOH . V 7 HOH B 3 203 56 HOH HOH . V 7 HOH B 4 204 60 HOH HOH . V 7 HOH B 5 205 64 HOH HOH . V 7 HOH B 6 206 86 HOH HOH . W 7 HOH C 1 301 3 HOH HOH . W 7 HOH C 2 302 21 HOH HOH . W 7 HOH C 3 303 45 HOH HOH . W 7 HOH C 4 304 53 HOH HOH . W 7 HOH C 5 305 54 HOH HOH . W 7 HOH C 6 306 58 HOH HOH . W 7 HOH C 7 307 65 HOH HOH . W 7 HOH C 8 308 70 HOH HOH . W 7 HOH C 9 309 76 HOH HOH . W 7 HOH C 10 310 83 HOH HOH . W 7 HOH C 11 311 84 HOH HOH . W 7 HOH C 12 312 85 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CS _atom_site.label_atom_id CS _atom_site.label_comp_id CS _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 30.733 _atom_site.Cartn_y 11.912 _atom_site.Cartn_z -19.032 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 74.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CS _atom_site.auth_comp_id CS _atom_site.auth_seq_id 503 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 1 #