data_4NU6 # _model_server_result.job_id b1eSZyVrn5P77yoSCStmXw _model_server_result.datetime_utc '2024-12-21 15:59:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nu6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":500}' # _entry.id 4NU6 # _exptl.entry_id 4NU6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NU6 _cell.length_a 116.119 _cell.length_b 81.472 _cell.length_c 82.15 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NU6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 4NU6 _atom_sites.fract_transf_matrix[1][1] 0.008612 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012274 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012173 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAD A 1 500 500 NAD NAD . D 3 SO4 A 1 501 501 SO4 SO4 . E 2 NAD B 1 500 500 NAD NAD . F 3 SO4 B 1 501 501 SO4 SO4 . G 4 HOH A 1 601 2 HOH HOH . G 4 HOH A 2 602 3 HOH HOH . G 4 HOH A 3 603 4 HOH HOH . G 4 HOH A 4 604 5 HOH HOH . G 4 HOH A 5 605 6 HOH HOH . G 4 HOH A 6 606 11 HOH HOH . G 4 HOH A 7 607 12 HOH HOH . G 4 HOH A 8 608 13 HOH HOH . G 4 HOH A 9 609 17 HOH HOH . G 4 HOH A 10 610 18 HOH HOH . G 4 HOH A 11 611 19 HOH HOH . G 4 HOH A 12 612 22 HOH HOH . G 4 HOH A 13 613 23 HOH HOH . G 4 HOH A 14 614 25 HOH HOH . G 4 HOH A 15 615 28 HOH HOH . G 4 HOH A 16 616 29 HOH HOH . G 4 HOH A 17 617 31 HOH HOH . G 4 HOH A 18 618 34 HOH HOH . G 4 HOH A 19 619 35 HOH HOH . G 4 HOH A 20 620 41 HOH HOH . G 4 HOH A 21 621 42 HOH HOH . G 4 HOH A 22 622 43 HOH HOH . G 4 HOH A 23 623 44 HOH HOH . G 4 HOH A 24 624 53 HOH HOH . G 4 HOH A 25 625 56 HOH HOH . G 4 HOH A 26 626 58 HOH HOH . G 4 HOH A 27 627 61 HOH HOH . G 4 HOH A 28 628 64 HOH HOH . G 4 HOH A 29 629 66 HOH HOH . G 4 HOH A 30 630 67 HOH HOH . G 4 HOH A 31 631 70 HOH HOH . G 4 HOH A 32 632 71 HOH HOH . G 4 HOH A 33 633 73 HOH HOH . G 4 HOH A 34 634 74 HOH HOH . G 4 HOH A 35 635 75 HOH HOH . G 4 HOH A 36 636 80 HOH HOH . G 4 HOH A 37 637 81 HOH HOH . G 4 HOH A 38 638 84 HOH HOH . G 4 HOH A 39 639 88 HOH HOH . G 4 HOH A 40 640 89 HOH HOH . G 4 HOH A 41 641 92 HOH HOH . G 4 HOH A 42 642 103 HOH HOH . G 4 HOH A 43 643 104 HOH HOH . G 4 HOH A 44 644 111 HOH HOH . G 4 HOH A 45 645 113 HOH HOH . G 4 HOH A 46 646 115 HOH HOH . G 4 HOH A 47 647 117 HOH HOH . G 4 HOH A 48 648 120 HOH HOH . G 4 HOH A 49 649 123 HOH HOH . G 4 HOH A 50 650 126 HOH HOH . G 4 HOH A 51 651 128 HOH HOH . G 4 HOH A 52 652 130 HOH HOH . G 4 HOH A 53 653 131 HOH HOH . G 4 HOH A 54 654 133 HOH HOH . G 4 HOH A 55 655 136 HOH HOH . G 4 HOH A 56 656 137 HOH HOH . H 4 HOH B 1 601 1 HOH HOH . H 4 HOH B 2 602 7 HOH HOH . H 4 HOH B 3 603 8 HOH HOH . H 4 HOH B 4 604 9 HOH HOH . H 4 HOH B 5 605 10 HOH HOH . H 4 HOH B 6 606 14 HOH HOH . H 4 HOH B 7 607 15 HOH HOH . H 4 HOH B 8 608 16 HOH HOH . H 4 HOH B 9 609 20 HOH HOH . H 4 HOH B 10 610 21 HOH HOH . H 4 HOH B 11 611 24 HOH HOH . H 4 HOH B 12 612 26 HOH HOH . H 4 HOH B 13 613 27 HOH HOH . H 4 HOH B 14 614 30 HOH HOH . H 4 HOH B 15 615 32 HOH HOH . H 4 HOH B 16 616 36 HOH HOH . H 4 HOH B 17 617 37 HOH HOH . H 4 HOH B 18 618 38 HOH HOH . H 4 HOH B 19 619 39 HOH HOH . H 4 HOH B 20 620 40 HOH HOH . H 4 HOH B 21 621 45 HOH HOH . H 4 HOH B 22 622 46 HOH HOH . H 4 HOH B 23 623 47 HOH HOH . H 4 HOH B 24 624 48 HOH HOH . H 4 HOH B 25 625 49 HOH HOH . H 4 HOH B 26 626 51 HOH HOH . H 4 HOH B 27 627 52 HOH HOH . H 4 HOH B 28 628 54 HOH HOH . H 4 HOH B 29 629 55 HOH HOH . H 4 HOH B 30 630 57 HOH HOH . H 4 HOH B 31 631 59 HOH HOH . H 4 HOH B 32 632 62 HOH HOH . H 4 HOH B 33 633 63 HOH HOH . H 4 HOH B 34 634 65 HOH HOH . H 4 HOH B 35 635 68 HOH HOH . H 4 HOH B 36 636 69 HOH HOH . H 4 HOH B 37 637 72 HOH HOH . H 4 HOH B 38 638 76 HOH HOH . H 4 HOH B 39 639 77 HOH HOH . H 4 HOH B 40 640 79 HOH HOH . H 4 HOH B 41 641 82 HOH HOH . H 4 HOH B 42 642 83 HOH HOH . H 4 HOH B 43 643 85 HOH HOH . H 4 HOH B 44 644 86 HOH HOH . H 4 HOH B 45 645 90 HOH HOH . H 4 HOH B 46 646 91 HOH HOH . H 4 HOH B 47 647 93 HOH HOH . H 4 HOH B 48 648 94 HOH HOH . H 4 HOH B 49 649 95 HOH HOH . H 4 HOH B 50 650 98 HOH HOH . H 4 HOH B 51 651 99 HOH HOH . H 4 HOH B 52 652 100 HOH HOH . H 4 HOH B 53 653 101 HOH HOH . H 4 HOH B 54 654 107 HOH HOH . H 4 HOH B 55 655 108 HOH HOH . H 4 HOH B 56 656 109 HOH HOH . H 4 HOH B 57 657 110 HOH HOH . H 4 HOH B 58 658 112 HOH HOH . H 4 HOH B 59 659 116 HOH HOH . H 4 HOH B 60 660 118 HOH HOH . H 4 HOH B 61 661 119 HOH HOH . H 4 HOH B 62 662 121 HOH HOH . H 4 HOH B 63 663 124 HOH HOH . H 4 HOH B 64 664 125 HOH HOH . H 4 HOH B 65 665 127 HOH HOH . H 4 HOH B 66 666 129 HOH HOH . H 4 HOH B 67 667 132 HOH HOH . H 4 HOH B 68 668 135 HOH HOH . H 4 HOH B 69 669 138 HOH HOH . H 4 HOH B 70 670 140 HOH HOH . H 4 HOH B 71 671 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . E 2 -41.302 39.718 5.989 1 28.85 ? PA NAD 500 B 1 HETATM 2 O O1A NAD . . . E 2 -42.38 39.605 7.007 1 26.88 ? O1A NAD 500 B 1 HETATM 3 O O2A NAD . . . E 2 -40.099 40.633 6.148 1 29.15 ? O2A NAD 500 B 1 HETATM 4 O O5B NAD . . . E 2 -41.971 40.088 4.596 1 28.72 ? O5B NAD 500 B 1 HETATM 5 C C5B NAD . . . E 2 -43.345 39.846 4.366 1 30.53 ? C5B NAD 500 B 1 HETATM 6 C C4B NAD . . . E 2 -43.683 40.721 3.167 1 31.37 ? C4B NAD 500 B 1 HETATM 7 O O4B NAD . . . E 2 -44.769 40.2 2.396 1 32.59 ? O4B NAD 500 B 1 HETATM 8 C C3B NAD . . . E 2 -44.1 42.098 3.643 1 31.48 ? C3B NAD 500 B 1 HETATM 9 O O3B NAD . . . E 2 -43.58 42.992 2.671 1 28.9 ? O3B NAD 500 B 1 HETATM 10 C C2B NAD . . . E 2 -45.599 42.002 3.543 1 31.92 ? C2B NAD 500 B 1 HETATM 11 O O2B NAD . . . E 2 -46.27 43.246 3.421 1 31.41 ? O2B NAD 500 B 1 HETATM 12 C C1B NAD . . . E 2 -45.766 41.208 2.275 1 32.23 ? C1B NAD 500 B 1 HETATM 13 N N9A NAD . . . E 2 -47.16 40.716 2.257 1 33.14 ? N9A NAD 500 B 1 HETATM 14 C C8A NAD . . . E 2 -47.841 40.206 3.299 1 31.12 ? C8A NAD 500 B 1 HETATM 15 N N7A NAD . . . E 2 -49.11 39.901 2.917 1 31.15 ? N7A NAD 500 B 1 HETATM 16 C C5A NAD . . . E 2 -49.253 40.228 1.622 1 31.43 ? C5A NAD 500 B 1 HETATM 17 C C6A NAD . . . E 2 -50.335 40.159 0.61 1 31.56 ? C6A NAD 500 B 1 HETATM 18 N N6A NAD . . . E 2 -51.55 39.679 0.948 1 31.92 ? N6A NAD 500 B 1 HETATM 19 N N1A NAD . . . E 2 -50.073 40.603 -0.646 1 31.63 ? N1A NAD 500 B 1 HETATM 20 C C2A NAD . . . E 2 -48.856 41.103 -0.977 1 31.29 ? C2A NAD 500 B 1 HETATM 21 N N3A NAD . . . E 2 -47.829 41.217 -0.107 1 31.38 ? N3A NAD 500 B 1 HETATM 22 C C4A NAD . . . E 2 -47.964 40.785 1.186 1 32.71 ? C4A NAD 500 B 1 HETATM 23 O O3 NAD . . . E 2 -40.791 38.202 5.692 1 33.3 ? O3 NAD 500 B 1 HETATM 24 P PN NAD . . . E 2 -39.554 37.715 4.76 1 32.2 ? PN NAD 500 B 1 HETATM 25 O O1N NAD . . . E 2 -38.426 37.583 5.72 1 35.47 ? O1N NAD 500 B 1 HETATM 26 O O2N NAD . . . E 2 -39.364 38.558 3.53 1 32.31 ? O2N NAD 500 B 1 HETATM 27 O O5D NAD . . . E 2 -40.018 36.262 4.347 1 31.31 ? O5D NAD 500 B 1 HETATM 28 C C5D NAD . . . E 2 -41.385 36.087 4.002 1 31.28 ? C5D NAD 500 B 1 HETATM 29 C C4D NAD . . . E 2 -41.711 34.599 4.057 1 29.81 ? C4D NAD 500 B 1 HETATM 30 O O4D NAD . . . E 2 -40.71 33.804 3.411 1 27.84 ? O4D NAD 500 B 1 HETATM 31 C C3D NAD . . . E 2 -41.725 34.106 5.487 1 28.61 ? C3D NAD 500 B 1 HETATM 32 O O3D NAD . . . E 2 -43.002 34.367 6.055 1 28.45 ? O3D NAD 500 B 1 HETATM 33 C C2D NAD . . . E 2 -41.424 32.626 5.337 1 27.17 ? C2D NAD 500 B 1 HETATM 34 O O2D NAD . . . E 2 -42.596 31.806 5.287 1 25.91 ? O2D NAD 500 B 1 HETATM 35 C C1D NAD . . . E 2 -40.706 32.509 4.007 1 26.82 ? C1D NAD 500 B 1 HETATM 36 N N1N NAD . . . E 2 -39.311 32.108 4.172 1 28.2 ? N1N NAD 500 B 1 HETATM 37 C C2N NAD . . . E 2 -38.835 30.954 3.603 1 27.55 ? C2N NAD 500 B 1 HETATM 38 C C3N NAD . . . E 2 -37.487 30.588 3.77 1 27.35 ? C3N NAD 500 B 1 HETATM 39 C C7N NAD . . . E 2 -36.863 29.358 3.182 1 27.64 ? C7N NAD 500 B 1 HETATM 40 O O7N NAD . . . E 2 -35.944 28.822 3.781 1 28.74 ? O7N NAD 500 B 1 HETATM 41 N N7N NAD . . . E 2 -37.288 28.864 2.015 1 27.73 ? N7N NAD 500 B 1 HETATM 42 C C4N NAD . . . E 2 -36.667 31.423 4.525 1 29 ? C4N NAD 500 B 1 HETATM 43 C C5N NAD . . . E 2 -37.169 32.604 5.099 1 28.41 ? C5N NAD 500 B 1 HETATM 44 C C6N NAD . . . E 2 -38.51 32.924 4.901 1 27.98 ? C6N NAD 500 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 990 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 44 #