data_4NU8
#
_model_server_result.job_id            eqc0JQAqqBleNFjFUo2b9g 
_model_server_result.datetime_utc      '2025-08-03 12:54:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nu8 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
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_entry.id    4NU8 
#
_exptl.entry_id    4NU8 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NU8 
_cell.length_a            112.322 
_cell.length_b            112.322 
_cell.length_c            45.8 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NU8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        80 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C VAL 47 X VAL 41 1_555 A N LLP 48 X LLP 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale2 A C LLP 48 X LLP 42 1_555 A N CYS 49 X CYS 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4NU8 
_atom_sites.fract_transf_matrix[1][1]    0.008903 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008903 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.021834 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL X 1 401 1 GOL GOL . 
D 4 HOH X 1 501 1 HOH HOH . 
D 4 HOH X 2 502 2 HOH HOH . 
D 4 HOH X 3 503 3 HOH HOH . 
D 4 HOH X 4 504 4 HOH HOH . 
D 4 HOH X 5 505 5 HOH HOH . 
D 4 HOH X 6 506 6 HOH HOH . 
D 4 HOH X 7 507 7 HOH HOH . 
D 4 HOH X 8 508 9 HOH HOH . 
D 4 HOH X 9 509 10 HOH HOH . 
D 4 HOH X 10 510 11 HOH HOH . 
D 4 HOH X 11 511 12 HOH HOH . 
D 4 HOH X 12 512 13 HOH HOH . 
D 4 HOH X 13 513 15 HOH HOH . 
D 4 HOH X 14 514 16 HOH HOH . 
D 4 HOH X 15 515 17 HOH HOH . 
D 4 HOH X 16 516 18 HOH HOH . 
D 4 HOH X 17 517 19 HOH HOH . 
D 4 HOH X 18 518 20 HOH HOH . 
D 4 HOH X 19 519 21 HOH HOH . 
D 4 HOH X 20 520 23 HOH HOH . 
D 4 HOH X 21 521 24 HOH HOH . 
D 4 HOH X 22 522 25 HOH HOH . 
D 4 HOH X 23 523 26 HOH HOH . 
D 4 HOH X 24 524 27 HOH HOH . 
D 4 HOH X 25 525 28 HOH HOH . 
D 4 HOH X 26 526 29 HOH HOH . 
D 4 HOH X 27 527 30 HOH HOH . 
D 4 HOH X 28 528 31 HOH HOH . 
D 4 HOH X 29 529 32 HOH HOH . 
D 4 HOH X 30 530 33 HOH HOH . 
D 4 HOH X 31 531 34 HOH HOH . 
D 4 HOH X 32 532 35 HOH HOH . 
D 4 HOH X 33 533 36 HOH HOH . 
D 4 HOH X 34 534 37 HOH HOH . 
D 4 HOH X 35 535 38 HOH HOH . 
D 4 HOH X 36 536 39 HOH HOH . 
D 4 HOH X 37 537 40 HOH HOH . 
D 4 HOH X 38 538 41 HOH HOH . 
D 4 HOH X 39 539 42 HOH HOH . 
D 4 HOH X 40 540 43 HOH HOH . 
D 4 HOH X 41 541 44 HOH HOH . 
D 4 HOH X 42 542 45 HOH HOH . 
D 4 HOH X 43 543 47 HOH HOH . 
D 4 HOH X 44 544 48 HOH HOH . 
D 4 HOH X 45 545 49 HOH HOH . 
D 4 HOH X 46 546 50 HOH HOH . 
D 4 HOH X 47 547 51 HOH HOH . 
D 4 HOH X 48 548 52 HOH HOH . 
D 4 HOH X 49 549 53 HOH HOH . 
D 4 HOH X 50 550 54 HOH HOH . 
D 4 HOH X 51 551 55 HOH HOH . 
D 4 HOH X 52 552 56 HOH HOH . 
D 4 HOH X 53 553 57 HOH HOH . 
D 4 HOH X 54 554 58 HOH HOH . 
D 4 HOH X 55 555 59 HOH HOH . 
D 4 HOH X 56 556 60 HOH HOH . 
D 4 HOH X 57 557 61 HOH HOH . 
D 4 HOH X 58 558 62 HOH HOH . 
D 4 HOH X 59 559 63 HOH HOH . 
D 4 HOH X 60 560 64 HOH HOH . 
D 4 HOH X 61 561 65 HOH HOH . 
D 4 HOH X 62 562 66 HOH HOH . 
D 4 HOH X 63 563 67 HOH HOH . 
D 4 HOH X 64 564 68 HOH HOH . 
D 4 HOH X 65 565 69 HOH HOH . 
D 4 HOH X 66 566 70 HOH HOH . 
D 4 HOH X 67 567 71 HOH HOH . 
D 4 HOH X 68 568 72 HOH HOH . 
D 4 HOH X 69 569 73 HOH HOH . 
D 4 HOH X 70 570 74 HOH HOH . 
D 4 HOH X 71 571 75 HOH HOH . 
D 4 HOH X 72 572 76 HOH HOH . 
D 4 HOH X 73 573 77 HOH HOH . 
D 4 HOH X 74 574 78 HOH HOH . 
D 4 HOH X 75 575 79 HOH HOH . 
D 4 HOH X 76 576 80 HOH HOH . 
D 4 HOH X 77 577 81 HOH HOH . 
D 4 HOH X 78 578 82 HOH HOH . 
D 4 HOH X 79 579 83 HOH HOH . 
E 4 HOH A 1 301 22 HOH HOH . 
E 4 HOH A 2 302 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 -22.16 -15.132 -23.699 1 40.08 ? C1 GOL 401 X 1 
HETATM 2 O O1 GOL . . . C 3 -22.764 -15.425 -22.456 1 43.25 ? O1 GOL 401 X 1 
HETATM 3 C C2 GOL . . . C 3 -23.165 -14.49 -24.661 1 40.14 ? C2 GOL 401 X 1 
HETATM 4 O O2 GOL . . . C 3 -23.705 -13.341 -24.054 1 43.65 ? O2 GOL 401 X 1 
HETATM 5 C C3 GOL . . . C 3 -22.463 -14.048 -25.945 1 38.04 ? C3 GOL 401 X 1 
HETATM 6 O O3 GOL . . . C 3 -21.774 -15.135 -26.531 1 32.54 ? O3 GOL 401 X 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#