data_4NUL # _model_server_result.job_id F-vUC-ZHoVjwyhWM9EEolw _model_server_result.datetime_utc '2025-02-19 22:12:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nul # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":139}' # _entry.id 4NUL # _exptl.entry_id 4NUL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4NUL _cell.length_a 61.51 _cell.length_b 61.51 _cell.length_c 70.89 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NUL _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 4NUL _atom_sites.fract_transf_matrix[1][1] 0.016258 _atom_sites.fract_transf_matrix[1][2] 0.009386 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014106 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 139 139 FMN FMN . C 3 HOH A 1 141 141 HOH HOH . C 3 HOH A 2 144 144 HOH HOH . C 3 HOH A 3 147 147 HOH HOH . C 3 HOH A 4 148 148 HOH HOH . C 3 HOH A 5 149 149 HOH HOH . C 3 HOH A 6 150 150 HOH HOH . C 3 HOH A 7 151 151 HOH HOH . C 3 HOH A 8 161 161 HOH HOH . C 3 HOH A 9 165 165 HOH HOH . C 3 HOH A 10 167 167 HOH HOH . C 3 HOH A 11 179 179 HOH HOH . C 3 HOH A 12 182 182 HOH HOH . C 3 HOH A 13 187 187 HOH HOH . C 3 HOH A 14 188 188 HOH HOH . C 3 HOH A 15 189 189 HOH HOH . C 3 HOH A 16 192 192 HOH HOH . C 3 HOH A 17 193 193 HOH HOH . C 3 HOH A 18 194 194 HOH HOH . C 3 HOH A 19 201 201 HOH HOH . C 3 HOH A 20 202 202 HOH HOH . C 3 HOH A 21 205 205 HOH HOH . C 3 HOH A 22 208 208 HOH HOH . C 3 HOH A 23 215 215 HOH HOH . C 3 HOH A 24 219 219 HOH HOH . C 3 HOH A 25 220 220 HOH HOH . C 3 HOH A 26 222 222 HOH HOH . C 3 HOH A 27 228 228 HOH HOH . C 3 HOH A 28 230 230 HOH HOH . C 3 HOH A 29 231 231 HOH HOH . C 3 HOH A 30 233 233 HOH HOH . C 3 HOH A 31 235 235 HOH HOH . C 3 HOH A 32 238 238 HOH HOH . C 3 HOH A 33 239 239 HOH HOH . C 3 HOH A 34 244 244 HOH HOH . C 3 HOH A 35 245 245 HOH HOH . C 3 HOH A 36 246 246 HOH HOH . C 3 HOH A 37 248 248 HOH HOH . C 3 HOH A 38 250 250 HOH HOH . C 3 HOH A 39 251 251 HOH HOH . C 3 HOH A 40 252 252 HOH HOH . C 3 HOH A 41 253 253 HOH HOH . C 3 HOH A 42 254 254 HOH HOH . C 3 HOH A 43 255 255 HOH HOH . C 3 HOH A 44 262 262 HOH HOH . C 3 HOH A 45 265 265 HOH HOH . C 3 HOH A 46 266 266 HOH HOH . C 3 HOH A 47 270 270 HOH HOH . C 3 HOH A 48 271 271 HOH HOH . C 3 HOH A 49 272 272 HOH HOH . C 3 HOH A 50 273 273 HOH HOH . C 3 HOH A 51 275 275 HOH HOH . C 3 HOH A 52 276 276 HOH HOH . C 3 HOH A 53 279 279 HOH HOH . C 3 HOH A 54 281 281 HOH HOH . C 3 HOH A 55 283 283 HOH HOH . C 3 HOH A 56 284 284 HOH HOH . C 3 HOH A 57 287 287 HOH HOH . C 3 HOH A 58 290 290 HOH HOH . C 3 HOH A 59 291 291 HOH HOH . C 3 HOH A 60 292 292 HOH HOH . C 3 HOH A 61 293 293 HOH HOH . C 3 HOH A 62 297 297 HOH HOH . C 3 HOH A 63 304 304 HOH HOH . C 3 HOH A 64 305 305 HOH HOH . C 3 HOH A 65 307 307 HOH HOH . C 3 HOH A 66 308 308 HOH HOH . C 3 HOH A 67 314 314 HOH HOH . C 3 HOH A 68 315 315 HOH HOH . C 3 HOH A 69 318 318 HOH HOH . C 3 HOH A 70 320 320 HOH HOH . C 3 HOH A 71 321 321 HOH HOH . C 3 HOH A 72 322 322 HOH HOH . C 3 HOH A 73 323 323 HOH HOH . C 3 HOH A 74 324 324 HOH HOH . C 3 HOH A 75 326 326 HOH HOH . C 3 HOH A 76 327 327 HOH HOH . C 3 HOH A 77 328 328 HOH HOH . C 3 HOH A 78 329 329 HOH HOH . C 3 HOH A 79 331 331 HOH HOH . C 3 HOH A 80 332 332 HOH HOH . C 3 HOH A 81 333 333 HOH HOH . C 3 HOH A 82 334 334 HOH HOH . C 3 HOH A 83 335 335 HOH HOH . C 3 HOH A 84 336 336 HOH HOH . C 3 HOH A 85 341 341 HOH HOH . C 3 HOH A 86 342 342 HOH HOH . C 3 HOH A 87 343 343 HOH HOH . C 3 HOH A 88 344 344 HOH HOH . C 3 HOH A 89 345 345 HOH HOH . C 3 HOH A 90 346 346 HOH HOH . C 3 HOH A 91 347 347 HOH HOH . C 3 HOH A 92 348 348 HOH HOH . C 3 HOH A 93 349 349 HOH HOH . C 3 HOH A 94 350 350 HOH HOH . C 3 HOH A 95 354 354 HOH HOH . C 3 HOH A 96 355 355 HOH HOH . C 3 HOH A 97 357 357 HOH HOH . C 3 HOH A 98 359 359 HOH HOH . C 3 HOH A 99 360 360 HOH HOH . C 3 HOH A 100 364 364 HOH HOH . C 3 HOH A 101 368 368 HOH HOH . C 3 HOH A 102 370 370 HOH HOH . C 3 HOH A 103 371 371 HOH HOH . C 3 HOH A 104 372 372 HOH HOH . C 3 HOH A 105 376 376 HOH HOH . C 3 HOH A 106 377 377 HOH HOH . C 3 HOH A 107 378 378 HOH HOH . C 3 HOH A 108 379 379 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 27.933 14.193 15.994 1 4.19 ? N1 FMN 139 A 1 HETATM 2 C C2 FMN . . . B 2 28.071 13.968 17.29 1 4.5 ? C2 FMN 139 A 1 HETATM 3 O O2 FMN . . . B 2 27.086 13.773 17.963 1 4.07 ? O2 FMN 139 A 1 HETATM 4 N N3 FMN . . . B 2 29.363 13.925 17.865 1 7.45 ? N3 FMN 139 A 1 HETATM 5 C C4 FMN . . . B 2 30.548 14.101 17.2 1 6.98 ? C4 FMN 139 A 1 HETATM 6 O O4 FMN . . . B 2 31.627 14.076 17.776 1 7.38 ? O4 FMN 139 A 1 HETATM 7 C C4A FMN . . . B 2 30.399 14.333 15.757 1 6.8 ? C4A FMN 139 A 1 HETATM 8 N N5 FMN . . . B 2 31.484 14.438 15 1 4.83 ? N5 FMN 139 A 1 HETATM 9 C C5A FMN . . . B 2 31.286 14.587 13.657 1 5.3 ? C5A FMN 139 A 1 HETATM 10 C C6 FMN . . . B 2 32.413 14.702 12.825 1 4.87 ? C6 FMN 139 A 1 HETATM 11 C C7 FMN . . . B 2 32.278 14.917 11.5 1 5.41 ? C7 FMN 139 A 1 HETATM 12 C C7M FMN . . . B 2 33.493 14.955 10.611 1 7.39 ? C7M FMN 139 A 1 HETATM 13 C C8 FMN . . . B 2 30.989 15.055 10.94 1 6.77 ? C8 FMN 139 A 1 HETATM 14 C C8M FMN . . . B 2 30.798 15.253 9.466 1 6.88 ? C8M FMN 139 A 1 HETATM 15 C C9 FMN . . . B 2 29.867 14.952 11.735 1 6.28 ? C9 FMN 139 A 1 HETATM 16 C C9A FMN . . . B 2 29.986 14.708 13.087 1 6.21 ? C9A FMN 139 A 1 HETATM 17 N N10 FMN . . . B 2 28.87 14.53 13.913 1 5.51 ? N10 FMN 139 A 1 HETATM 18 C C10 FMN . . . B 2 29.008 14.365 15.255 1 5.36 ? C10 FMN 139 A 1 HETATM 19 C C1' FMN . . . B 2 27.539 14.486 13.302 1 6.52 ? C1' FMN 139 A 1 HETATM 20 C C2' FMN . . . B 2 26.949 15.882 13.078 1 5.8 ? C2' FMN 139 A 1 HETATM 21 O O2' FMN . . . B 2 27 16.649 14.276 1 6.03 ? O2' FMN 139 A 1 HETATM 22 C C3' FMN . . . B 2 25.495 15.747 12.636 1 4.57 ? C3' FMN 139 A 1 HETATM 23 O O3' FMN . . . B 2 25.449 15.059 11.387 1 4.17 ? O3' FMN 139 A 1 HETATM 24 C C4' FMN . . . B 2 24.719 17.061 12.532 1 5.6 ? C4' FMN 139 A 1 HETATM 25 O O4' FMN . . . B 2 23.366 16.779 12.178 1 5.23 ? O4' FMN 139 A 1 HETATM 26 C C5' FMN . . . B 2 25.325 17.957 11.458 1 6.19 ? C5' FMN 139 A 1 HETATM 27 O O5' FMN . . . B 2 24.57 19.134 11.322 1 6.3 ? O5' FMN 139 A 1 HETATM 28 P P FMN . . . B 2 24.858 20.202 10.174 1 5.16 ? P FMN 139 A 1 HETATM 29 O O1P FMN . . . B 2 24.358 19.785 8.887 1 5.26 ? O1P FMN 139 A 1 HETATM 30 O O2P FMN . . . B 2 24.364 21.491 10.701 1 6.42 ? O2P FMN 139 A 1 HETATM 31 O O3P FMN . . . B 2 26.373 20.306 10.153 1 6.13 ? O3P FMN 139 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #