data_4NV2 # _model_server_result.job_id nkbnR_gpiI3aDwAe8zqV_Q _model_server_result.datetime_utc '2024-10-12 06:22:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nv2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4NV2 # _exptl.entry_id 4NV2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 863.343 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-10 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NV2 _cell.length_a 130.8 _cell.length_b 142.49 _cell.length_c 69.01 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NV2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 56 A CYS 56 1_555 A SG CYS 130 A CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 A SG CYS 209 A CYS 209 1_555 A SG CYS 212 A CYS 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 231 A CYS 231 1_555 A SG CYS 244 A CYS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C59 H90 O4' _chem_comp.formula_weight 863.343 _chem_comp.id U10 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Coenzyme Q10' # _atom_sites.entry_id 4NV2 _atom_sites.fract_transf_matrix[1][1] 0.007645 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007018 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014491 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id U10 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 501 _pdbx_nonpoly_scheme.pdb_mon_id U10 _pdbx_nonpoly_scheme.auth_mon_id U10 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U10 . . . B 2 27.628 25.191 12.641 1 132.3 ? C1 U10 501 A 1 HETATM 2 C C2 U10 . . . B 2 27.878 24.011 13.517 1 133.86 ? C2 U10 501 A 1 HETATM 3 C C3 U10 . . . B 2 26.76 23.113 13.919 1 130.98 ? C3 U10 501 A 1 HETATM 4 C C4 U10 . . . B 2 25.378 23.401 13.453 1 129.24 ? C4 U10 501 A 1 HETATM 5 C C5 U10 . . . B 2 25.122 24.575 12.572 1 129.98 ? C5 U10 501 A 1 HETATM 6 C C6 U10 . . . B 2 26.236 25.472 12.164 1 129.67 ? C6 U10 501 A 1 HETATM 7 C C1M U10 . . . B 2 28.804 26.062 12.262 1 132.06 ? C1M U10 501 A 1 HETATM 8 C C3M U10 . . . B 2 27.42 20.775 14.26 1 133.47 ? C3M U10 501 A 1 HETATM 9 C C4M U10 . . . B 2 24.178 22.091 15.147 1 133.96 ? C4M U10 501 A 1 HETATM 10 C C7 U10 . . . B 2 25.909 26.65 11.273 1 127.5 ? C7 U10 501 A 1 HETATM 11 C C8 U10 . . . B 2 26.205 27.929 12.024 1 128.1 ? C8 U10 501 A 1 HETATM 12 C C9 U10 . . . B 2 26.88 28.932 11.436 1 132.14 ? C9 U10 501 A 1 HETATM 13 C C10 U10 . . . B 2 27.338 28.805 10.008 1 138.24 ? C10 U10 501 A 1 HETATM 14 C C11 U10 . . . B 2 27.186 30.203 12.202 1 130.61 ? C11 U10 501 A 1 HETATM 15 C C12 U10 . . . B 2 28.548 30.063 12.889 1 124.67 ? C12 U10 501 A 1 HETATM 16 C C13 U10 . . . B 2 29.082 31.328 13.544 1 115.58 ? C13 U10 501 A 1 HETATM 17 C C14 U10 . . . B 2 28.643 31.798 14.727 1 114.37 ? C14 U10 501 A 1 HETATM 18 C C15 U10 . . . B 2 27.544 31.099 15.474 1 124.03 ? C15 U10 501 A 1 HETATM 19 C C16 U10 . . . B 2 29.255 33.048 15.316 1 111.41 ? C16 U10 501 A 1 HETATM 20 C C17 U10 . . . B 2 28.203 33.953 15.959 1 112.01 ? C17 U10 501 A 1 HETATM 21 C C18 U10 . . . B 2 28.293 33.933 17.474 1 103.03 ? C18 U10 501 A 1 HETATM 22 C C19 U10 . . . B 2 27.794 34.923 18.241 1 100.31 ? C19 U10 501 A 1 HETATM 23 C C20 U10 . . . B 2 27.124 36.131 17.638 1 95.68 ? C20 U10 501 A 1 HETATM 24 C C21 U10 . . . B 2 27.926 34.819 19.745 1 104.54 ? C21 U10 501 A 1 HETATM 25 C C22 U10 . . . B 2 26.562 34.846 20.435 1 109.94 ? C22 U10 501 A 1 HETATM 26 C C23 U10 . . . B 2 26.668 35.574 21.759 1 112.98 ? C23 U10 501 A 1 HETATM 27 C C24 U10 . . . B 2 26.008 35.208 22.873 1 116.27 ? C24 U10 501 A 1 HETATM 28 C C25 U10 . . . B 2 25.09 34.017 22.876 1 116.57 ? C25 U10 501 A 1 HETATM 29 C C26 U10 . . . B 2 26.197 36.013 24.143 1 116.07 ? C26 U10 501 A 1 HETATM 30 O O2 U10 . . . B 2 29.039 23.772 13.915 1 135.16 ? O2 U10 501 A 1 HETATM 31 O O3 U10 . . . B 2 26.995 22.042 14.745 1 129.95 ? O3 U10 501 A 1 HETATM 32 O O4 U10 . . . B 2 24.337 22.584 13.814 1 133.1 ? O4 U10 501 A 1 HETATM 33 O O5 U10 . . . B 2 23.962 24.815 12.171 1 134.18 ? O5 U10 501 A 1 # _model_server_stats.io_time_ms 106 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #