data_4NV6 # _model_server_result.job_id 8tSEPx_fbFqYeplIsWRLSg _model_server_result.datetime_utc '2024-10-12 06:25:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nv6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4NV6 # _exptl.entry_id 4NV6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 863.343 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-10 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4NV6 _cell.length_a 139.563 _cell.length_b 139.563 _cell.length_c 68.724 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NV6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 56 A CYS 56 1_555 A SG CYS 130 A CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 231 A CYS 231 1_555 A SG CYS 244 A CYS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C59 H90 O4' _chem_comp.formula_weight 863.343 _chem_comp.id U10 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Coenzyme Q10' # _atom_sites.entry_id 4NV6 _atom_sites.fract_transf_matrix[1][1] 0.007165 _atom_sites.fract_transf_matrix[1][2] 0.004137 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008274 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id U10 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 501 _pdbx_nonpoly_scheme.pdb_mon_id U10 _pdbx_nonpoly_scheme.auth_mon_id U10 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U10 . . . B 2 28.298 -50.73 6.383 1 80.85 ? C1 U10 501 A 1 HETATM 2 C C2 U10 . . . B 2 28.412 -49.581 5.619 1 80.48 ? C2 U10 501 A 1 HETATM 3 C C3 U10 . . . B 2 27.282 -48.931 5.13 1 79.34 ? C3 U10 501 A 1 HETATM 4 C C4 U10 . . . B 2 26.009 -49.446 5.413 1 78.63 ? C4 U10 501 A 1 HETATM 5 C C5 U10 . . . B 2 25.91 -50.605 6.184 1 78.97 ? C5 U10 501 A 1 HETATM 6 C C6 U10 . . . B 2 27.047 -51.248 6.678 1 79.92 ? C6 U10 501 A 1 HETATM 7 C C1M U10 . . . B 2 29.54 -51.4 6.891 1 84.22 ? C1M U10 501 A 1 HETATM 8 C C3M U10 . . . B 2 27.955 -46.827 4.465 1 80.11 ? C3M U10 501 A 1 HETATM 9 C C4M U10 . . . B 2 24.641 -47.779 4.455 1 78.76 ? C4M U10 501 A 1 HETATM 10 C C7 U10 . . . B 2 26.94 -52.345 7.72 1 79.47 ? C7 U10 501 A 1 HETATM 11 C C8 U10 . . . B 2 27.196 -53.694 7.077 1 80.79 ? C8 U10 501 A 1 HETATM 12 C C9 U10 . . . B 2 28.298 -54.605 7.462 1 82.63 ? C9 U10 501 A 1 HETATM 13 C C10 U10 . . . B 2 29.08 -54.471 8.739 1 82.42 ? C10 U10 501 A 1 HETATM 14 C C11 U10 . . . B 2 28.645 -55.76 6.552 1 84.72 ? C11 U10 501 A 1 HETATM 15 C C12 U10 . . . B 2 29.525 -55.317 5.392 1 86.14 ? C12 U10 501 A 1 HETATM 16 C C13 U10 . . . B 2 30.233 -56.55 4.881 1 89.42 ? C13 U10 501 A 1 HETATM 17 C C14 U10 . . . B 2 29.738 -57.319 3.728 1 90.91 ? C14 U10 501 A 1 HETATM 18 C C15 U10 . . . B 2 28.312 -57.182 3.262 1 91.61 ? C15 U10 501 A 1 HETATM 19 C C16 U10 . . . B 2 30.72 -58.237 3.03 1 91.38 ? C16 U10 501 A 1 HETATM 20 C C17 U10 . . . B 2 30.118 -59.544 2.516 1 92.86 ? C17 U10 501 A 1 HETATM 21 C C18 U10 . . . B 2 30.408 -59.708 1.036 1 93.05 ? C18 U10 501 A 1 HETATM 22 C C19 U10 . . . B 2 30 -60.91 0.282 1 93.98 ? C19 U10 501 A 1 HETATM 23 C C20 U10 . . . B 2 29.428 -62.123 0.957 1 92.4 ? C20 U10 501 A 1 HETATM 24 C C21 U10 . . . B 2 30.19 -60.913 -1.213 1 94.54 ? C21 U10 501 A 1 HETATM 25 C C22 U10 . . . B 2 28.915 -60.466 -1.919 1 94.35 ? C22 U10 501 A 1 HETATM 26 C C23 U10 . . . B 2 29.102 -60.641 -3.409 1 96.79 ? C23 U10 501 A 1 HETATM 27 C C24 U10 . . . B 2 28.099 -60.189 -4.388 1 95.48 ? C24 U10 501 A 1 HETATM 28 C C25 U10 . . . B 2 27.196 -59.022 -4.111 1 93.33 ? C25 U10 501 A 1 HETATM 29 C C26 U10 . . . B 2 27.993 -60.901 -5.716 1 94.68 ? C26 U10 501 A 1 HETATM 30 O O2 U10 . . . B 2 29.523 -49.278 5.194 1 82.88 ? O2 U10 501 A 1 HETATM 31 O O3 U10 . . . B 2 27.448 -48.121 4.214 1 78.34 ? O3 U10 501 A 1 HETATM 32 O O4 U10 . . . B 2 25.019 -48.704 5.461 1 79.51 ? O4 U10 501 A 1 HETATM 33 O O5 U10 . . . B 2 24.792 -50.932 6.581 1 79.07 ? O5 U10 501 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #