data_4NVG # _model_server_result.job_id C2hUIioPsFjBhGleqbW9Eg _model_server_result.datetime_utc '2024-11-22 06:44:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nvg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4NVG # _exptl.entry_id 4NVG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NVG _cell.length_a 50.65 _cell.length_b 70.39 _cell.length_c 101.94 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NVG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 172 B HIS 175 1_555 B FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc2 B FE HEM . B HEM 301 1_555 G O HOH . B HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 396 n n P O2 PO4 sing 397 n n P O3 PO4 sing 398 n n P O4 PO4 sing 399 n n # _atom_sites.entry_id 4NVG _atom_sites.fract_transf_matrix[1][1] 0.019743 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00981 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM B 1 301 1 HEM HEM . C 3 2N9 B 1 302 1 2N9 008 . D 4 PO4 B 1 303 1 PO4 PO4 . E 4 PO4 B 1 304 2 PO4 PO4 . F 5 MES B 1 305 1 MES MES . G 6 HOH B 1 401 3 HOH HOH . G 6 HOH B 2 402 4 HOH HOH . G 6 HOH B 3 403 5 HOH HOH . G 6 HOH B 4 404 6 HOH HOH . G 6 HOH B 5 405 7 HOH HOH . G 6 HOH B 6 406 8 HOH HOH . G 6 HOH B 7 407 9 HOH HOH . G 6 HOH B 8 408 10 HOH HOH . G 6 HOH B 9 409 11 HOH HOH . G 6 HOH B 10 410 12 HOH HOH . G 6 HOH B 11 411 13 HOH HOH . G 6 HOH B 12 412 14 HOH HOH . G 6 HOH B 13 413 15 HOH HOH . G 6 HOH B 14 414 16 HOH HOH . G 6 HOH B 15 415 17 HOH HOH . G 6 HOH B 16 416 18 HOH HOH . G 6 HOH B 17 417 19 HOH HOH . G 6 HOH B 18 418 20 HOH HOH . G 6 HOH B 19 419 22 HOH HOH . G 6 HOH B 20 420 23 HOH HOH . G 6 HOH B 21 421 24 HOH HOH . G 6 HOH B 22 422 25 HOH HOH . G 6 HOH B 23 423 26 HOH HOH . G 6 HOH B 24 424 27 HOH HOH . G 6 HOH B 25 425 28 HOH HOH . G 6 HOH B 26 426 29 HOH HOH . G 6 HOH B 27 427 30 HOH HOH . G 6 HOH B 28 428 31 HOH HOH . G 6 HOH B 29 429 32 HOH HOH . G 6 HOH B 30 430 33 HOH HOH . G 6 HOH B 31 431 34 HOH HOH . G 6 HOH B 32 432 35 HOH HOH . G 6 HOH B 33 433 36 HOH HOH . G 6 HOH B 34 434 37 HOH HOH . G 6 HOH B 35 435 38 HOH HOH . G 6 HOH B 36 436 39 HOH HOH . G 6 HOH B 37 437 40 HOH HOH . G 6 HOH B 38 438 41 HOH HOH . G 6 HOH B 39 439 42 HOH HOH . G 6 HOH B 40 440 43 HOH HOH . G 6 HOH B 41 441 44 HOH HOH . G 6 HOH B 42 442 45 HOH HOH . G 6 HOH B 43 443 46 HOH HOH . G 6 HOH B 44 444 47 HOH HOH . G 6 HOH B 45 445 48 HOH HOH . G 6 HOH B 46 446 49 HOH HOH . G 6 HOH B 47 447 50 HOH HOH . G 6 HOH B 48 448 51 HOH HOH . G 6 HOH B 49 449 52 HOH HOH . G 6 HOH B 50 450 53 HOH HOH . G 6 HOH B 51 451 54 HOH HOH . G 6 HOH B 52 452 55 HOH HOH . G 6 HOH B 53 453 56 HOH HOH . G 6 HOH B 54 454 57 HOH HOH . G 6 HOH B 55 455 58 HOH HOH . G 6 HOH B 56 456 59 HOH HOH . G 6 HOH B 57 457 60 HOH HOH . G 6 HOH B 58 458 61 HOH HOH . G 6 HOH B 59 459 62 HOH HOH . G 6 HOH B 60 460 64 HOH HOH . G 6 HOH B 61 461 65 HOH HOH . G 6 HOH B 62 462 66 HOH HOH . G 6 HOH B 63 463 67 HOH HOH . G 6 HOH B 64 464 68 HOH HOH . G 6 HOH B 65 465 69 HOH HOH . G 6 HOH B 66 466 70 HOH HOH . G 6 HOH B 67 467 71 HOH HOH . G 6 HOH B 68 468 72 HOH HOH . G 6 HOH B 69 469 73 HOH HOH . G 6 HOH B 70 470 74 HOH HOH . G 6 HOH B 71 471 75 HOH HOH . G 6 HOH B 72 472 76 HOH HOH . G 6 HOH B 73 473 77 HOH HOH . G 6 HOH B 74 474 78 HOH HOH . G 6 HOH B 75 475 79 HOH HOH . G 6 HOH B 76 476 80 HOH HOH . G 6 HOH B 77 477 81 HOH HOH . G 6 HOH B 78 478 82 HOH HOH . G 6 HOH B 79 479 83 HOH HOH . G 6 HOH B 80 480 84 HOH HOH . G 6 HOH B 81 481 85 HOH HOH . G 6 HOH B 82 482 86 HOH HOH . G 6 HOH B 83 483 87 HOH HOH . G 6 HOH B 84 484 88 HOH HOH . G 6 HOH B 85 485 89 HOH HOH . G 6 HOH B 86 486 90 HOH HOH . G 6 HOH B 87 487 91 HOH HOH . G 6 HOH B 88 488 92 HOH HOH . G 6 HOH B 89 489 95 HOH HOH . G 6 HOH B 90 490 96 HOH HOH . G 6 HOH B 91 491 97 HOH HOH . G 6 HOH B 92 492 98 HOH HOH . G 6 HOH B 93 493 99 HOH HOH . G 6 HOH B 94 494 100 HOH HOH . G 6 HOH B 95 495 102 HOH HOH . G 6 HOH B 96 496 103 HOH HOH . G 6 HOH B 97 497 104 HOH HOH . G 6 HOH B 98 498 105 HOH HOH . G 6 HOH B 99 499 106 HOH HOH . G 6 HOH B 100 500 107 HOH HOH . G 6 HOH B 101 501 108 HOH HOH . G 6 HOH B 102 502 110 HOH HOH . G 6 HOH B 103 503 111 HOH HOH . G 6 HOH B 104 504 112 HOH HOH . G 6 HOH B 105 505 114 HOH HOH . G 6 HOH B 106 506 115 HOH HOH . G 6 HOH B 107 507 116 HOH HOH . G 6 HOH B 108 508 117 HOH HOH . G 6 HOH B 109 509 118 HOH HOH . G 6 HOH B 110 510 119 HOH HOH . G 6 HOH B 111 511 120 HOH HOH . G 6 HOH B 112 512 123 HOH HOH . G 6 HOH B 113 513 124 HOH HOH . G 6 HOH B 114 514 125 HOH HOH . G 6 HOH B 115 515 126 HOH HOH . G 6 HOH B 116 516 127 HOH HOH . G 6 HOH B 117 517 128 HOH HOH . G 6 HOH B 118 518 129 HOH HOH . G 6 HOH B 119 519 132 HOH HOH . G 6 HOH B 120 520 133 HOH HOH . G 6 HOH B 121 521 138 HOH HOH . G 6 HOH B 122 522 141 HOH HOH . G 6 HOH B 123 523 143 HOH HOH . G 6 HOH B 124 524 144 HOH HOH . G 6 HOH B 125 525 145 HOH HOH . G 6 HOH B 126 526 150 HOH HOH . G 6 HOH B 127 527 152 HOH HOH . G 6 HOH B 128 528 153 HOH HOH . G 6 HOH B 129 529 155 HOH HOH . G 6 HOH B 130 530 157 HOH HOH . G 6 HOH B 131 531 165 HOH HOH . G 6 HOH B 132 532 170 HOH HOH . G 6 HOH B 133 533 174 HOH HOH . G 6 HOH B 134 534 175 HOH HOH . G 6 HOH B 135 535 176 HOH HOH . G 6 HOH B 136 536 178 HOH HOH . G 6 HOH B 137 537 179 HOH HOH . G 6 HOH B 138 538 180 HOH HOH . G 6 HOH B 139 539 181 HOH HOH . G 6 HOH B 140 540 182 HOH HOH . G 6 HOH B 141 541 183 HOH HOH . G 6 HOH B 142 542 184 HOH HOH . G 6 HOH B 143 543 185 HOH HOH . G 6 HOH B 144 544 186 HOH HOH . G 6 HOH B 145 545 187 HOH HOH . G 6 HOH B 146 546 188 HOH HOH . G 6 HOH B 147 547 189 HOH HOH . G 6 HOH B 148 548 190 HOH HOH . G 6 HOH B 149 549 191 HOH HOH . G 6 HOH B 150 550 193 HOH HOH . G 6 HOH B 151 551 195 HOH HOH . G 6 HOH B 152 552 196 HOH HOH . G 6 HOH B 153 553 197 HOH HOH . G 6 HOH B 154 554 198 HOH HOH . G 6 HOH B 155 555 199 HOH HOH . G 6 HOH B 156 556 200 HOH HOH . G 6 HOH B 157 557 201 HOH HOH . G 6 HOH B 158 558 202 HOH HOH . G 6 HOH B 159 559 203 HOH HOH . G 6 HOH B 160 560 204 HOH HOH . G 6 HOH B 161 561 205 HOH HOH . G 6 HOH B 162 562 206 HOH HOH . G 6 HOH B 163 563 207 HOH HOH . G 6 HOH B 164 564 208 HOH HOH . G 6 HOH B 165 565 209 HOH HOH . G 6 HOH B 166 566 212 HOH HOH . G 6 HOH B 167 567 214 HOH HOH . G 6 HOH B 168 568 215 HOH HOH . G 6 HOH B 169 569 216 HOH HOH . G 6 HOH B 170 570 217 HOH HOH . G 6 HOH B 171 571 219 HOH HOH . G 6 HOH B 172 572 222 HOH HOH . G 6 HOH B 173 573 223 HOH HOH . G 6 HOH B 174 574 224 HOH HOH . G 6 HOH B 175 575 226 HOH HOH . G 6 HOH B 176 576 227 HOH HOH . G 6 HOH B 177 577 228 HOH HOH . G 6 HOH B 178 578 231 HOH HOH . G 6 HOH B 179 579 236 HOH HOH . G 6 HOH B 180 580 237 HOH HOH . G 6 HOH B 181 581 238 HOH HOH . G 6 HOH B 182 582 240 HOH HOH . G 6 HOH B 183 583 241 HOH HOH . G 6 HOH B 184 584 242 HOH HOH . G 6 HOH B 185 585 243 HOH HOH . G 6 HOH B 186 586 244 HOH HOH . G 6 HOH B 187 587 245 HOH HOH . G 6 HOH B 188 588 246 HOH HOH . G 6 HOH B 189 589 247 HOH HOH . G 6 HOH B 190 590 248 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 4 -3.715 14.005 -2.399 0.7 18.44 ? P PO4 303 B 1 HETATM 2 O O1 PO4 . . . D 4 -4.328 13.662 -3.756 0.7 29.46 ? O1 PO4 303 B 1 HETATM 3 O O2 PO4 . . . D 4 -3.185 15.442 -2.452 0.7 20.99 ? O2 PO4 303 B 1 HETATM 4 O O3 PO4 . . . D 4 -2.587 13.041 -2.174 0.7 21.03 ? O3 PO4 303 B 1 HETATM 5 O O4 PO4 . . . D 4 -4.71 13.83 -1.339 0.7 39.94 ? O4 PO4 303 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #