data_4NVJ
#
_model_server_result.job_id            yHNhfqbEAOF001FLPRdhyw 
_model_server_result.datetime_utc      '2024-11-22 05:59:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nvj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    4NVJ 
#
_exptl.entry_id    4NVJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              229.17 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'dimethyl benzoylphosphoramidate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NVJ 
_cell.length_a            51.3 
_cell.length_b            73.08 
_cell.length_c            104.03 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NVJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 172 B HIS 175 1_555 B FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc2 B FE HEM . B HEM 301 1_555 E O HOH . B HOH 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
#
_chem_comp.formula           'C9 H12 N O4 P' 
_chem_comp.formula_weight    229.17 
_chem_comp.id                2NX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'dimethyl benzoylphosphoramidate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA OAK 2NX sing 1 n n 
OAK PAO 2NX sing 2 n n 
OAD PAO 2NX doub 3 n n 
PAO NAJ 2NX sing 4 n n 
PAO OAL 2NX sing 5 n n 
NAJ CAM 2NX sing 6 n n 
OAL CAB 2NX sing 7 n n 
CAI CAG 2NX doub 8 n y 
CAI CAN 2NX sing 9 n y 
CAM OAC 2NX doub 10 n n 
CAM CAN 2NX sing 11 n n 
CAG CAE 2NX sing 12 n y 
CAN CAH 2NX doub 13 n y 
CAE CAF 2NX doub 14 n y 
CAH CAF 2NX sing 15 n y 
CAA H1 2NX sing 16 n n 
CAA H2 2NX sing 17 n n 
CAA H3 2NX sing 18 n n 
CAB H4 2NX sing 19 n n 
CAB H5 2NX sing 20 n n 
CAB H6 2NX sing 21 n n 
NAJ H7 2NX sing 22 n n 
CAH H8 2NX sing 23 n n 
CAF H9 2NX sing 24 n n 
CAE H10 2NX sing 25 n n 
CAG H11 2NX sing 26 n n 
CAI H12 2NX sing 27 n n 
#
_atom_sites.entry_id                     4NVJ 
_atom_sites.fract_transf_matrix[1][1]    0.019493 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013684 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009613 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM B 1 301 1 HEM HEM . 
C 3 2NX B 1 302 1 2NX DRG . 
D 4 MES B 1 303 1 MES MES . 
E 5 HOH B 1 401 1 HOH HOH . 
E 5 HOH B 2 402 2 HOH HOH . 
E 5 HOH B 3 403 3 HOH HOH . 
E 5 HOH B 4 404 4 HOH HOH . 
E 5 HOH B 5 405 5 HOH HOH . 
E 5 HOH B 6 406 6 HOH HOH . 
E 5 HOH B 7 407 7 HOH HOH . 
E 5 HOH B 8 408 8 HOH HOH . 
E 5 HOH B 9 409 9 HOH HOH . 
E 5 HOH B 10 410 10 HOH HOH . 
E 5 HOH B 11 411 11 HOH HOH . 
E 5 HOH B 12 412 13 HOH HOH . 
E 5 HOH B 13 413 14 HOH HOH . 
E 5 HOH B 14 414 15 HOH HOH . 
E 5 HOH B 15 415 16 HOH HOH . 
E 5 HOH B 16 416 17 HOH HOH . 
E 5 HOH B 17 417 18 HOH HOH . 
E 5 HOH B 18 418 19 HOH HOH . 
E 5 HOH B 19 419 20 HOH HOH . 
E 5 HOH B 20 420 21 HOH HOH . 
E 5 HOH B 21 421 22 HOH HOH . 
E 5 HOH B 22 422 23 HOH HOH . 
E 5 HOH B 23 423 24 HOH HOH . 
E 5 HOH B 24 424 25 HOH HOH . 
E 5 HOH B 25 425 26 HOH HOH . 
E 5 HOH B 26 426 27 HOH HOH . 
E 5 HOH B 27 427 28 HOH HOH . 
E 5 HOH B 28 428 29 HOH HOH . 
E 5 HOH B 29 429 30 HOH HOH . 
E 5 HOH B 30 430 31 HOH HOH . 
E 5 HOH B 31 431 32 HOH HOH . 
E 5 HOH B 32 432 33 HOH HOH . 
E 5 HOH B 33 433 34 HOH HOH . 
E 5 HOH B 34 434 35 HOH HOH . 
E 5 HOH B 35 435 36 HOH HOH . 
E 5 HOH B 36 436 37 HOH HOH . 
E 5 HOH B 37 437 38 HOH HOH . 
E 5 HOH B 38 438 39 HOH HOH . 
E 5 HOH B 39 439 40 HOH HOH . 
E 5 HOH B 40 440 41 HOH HOH . 
E 5 HOH B 41 441 42 HOH HOH . 
E 5 HOH B 42 442 43 HOH HOH . 
E 5 HOH B 43 443 44 HOH HOH . 
E 5 HOH B 44 444 45 HOH HOH . 
E 5 HOH B 45 445 46 HOH HOH . 
E 5 HOH B 46 446 47 HOH HOH . 
E 5 HOH B 47 447 48 HOH HOH . 
E 5 HOH B 48 448 49 HOH HOH . 
E 5 HOH B 49 449 50 HOH HOH . 
E 5 HOH B 50 450 51 HOH HOH . 
E 5 HOH B 51 451 52 HOH HOH . 
E 5 HOH B 52 452 53 HOH HOH . 
E 5 HOH B 53 453 54 HOH HOH . 
E 5 HOH B 54 454 55 HOH HOH . 
E 5 HOH B 55 455 56 HOH HOH . 
E 5 HOH B 56 456 57 HOH HOH . 
E 5 HOH B 57 457 58 HOH HOH . 
E 5 HOH B 58 458 59 HOH HOH . 
E 5 HOH B 59 459 60 HOH HOH . 
E 5 HOH B 60 460 61 HOH HOH . 
E 5 HOH B 61 461 62 HOH HOH . 
E 5 HOH B 62 462 63 HOH HOH . 
E 5 HOH B 63 463 64 HOH HOH . 
E 5 HOH B 64 464 65 HOH HOH . 
E 5 HOH B 65 465 66 HOH HOH . 
E 5 HOH B 66 466 67 HOH HOH . 
E 5 HOH B 67 467 68 HOH HOH . 
E 5 HOH B 68 468 69 HOH HOH . 
E 5 HOH B 69 469 70 HOH HOH . 
E 5 HOH B 70 470 71 HOH HOH . 
E 5 HOH B 71 471 72 HOH HOH . 
E 5 HOH B 72 472 73 HOH HOH . 
E 5 HOH B 73 473 74 HOH HOH . 
E 5 HOH B 74 474 75 HOH HOH . 
E 5 HOH B 75 475 76 HOH HOH . 
E 5 HOH B 76 476 77 HOH HOH . 
E 5 HOH B 77 477 78 HOH HOH . 
E 5 HOH B 78 478 79 HOH HOH . 
E 5 HOH B 79 479 80 HOH HOH . 
E 5 HOH B 80 480 81 HOH HOH . 
E 5 HOH B 81 481 82 HOH HOH . 
E 5 HOH B 82 482 83 HOH HOH . 
E 5 HOH B 83 483 84 HOH HOH . 
E 5 HOH B 84 484 85 HOH HOH . 
E 5 HOH B 85 485 86 HOH HOH . 
E 5 HOH B 86 486 87 HOH HOH . 
E 5 HOH B 87 487 88 HOH HOH . 
E 5 HOH B 88 488 90 HOH HOH . 
E 5 HOH B 89 489 91 HOH HOH . 
E 5 HOH B 90 490 92 HOH HOH . 
E 5 HOH B 91 491 93 HOH HOH . 
E 5 HOH B 92 492 94 HOH HOH . 
E 5 HOH B 93 493 95 HOH HOH . 
E 5 HOH B 94 494 96 HOH HOH . 
E 5 HOH B 95 495 97 HOH HOH . 
E 5 HOH B 96 496 98 HOH HOH . 
E 5 HOH B 97 497 99 HOH HOH . 
E 5 HOH B 98 498 100 HOH HOH . 
E 5 HOH B 99 499 101 HOH HOH . 
E 5 HOH B 100 500 102 HOH HOH . 
E 5 HOH B 101 501 103 HOH HOH . 
E 5 HOH B 102 502 104 HOH HOH . 
E 5 HOH B 103 503 105 HOH HOH . 
E 5 HOH B 104 504 106 HOH HOH . 
E 5 HOH B 105 505 107 HOH HOH . 
E 5 HOH B 106 506 108 HOH HOH . 
E 5 HOH B 107 507 109 HOH HOH . 
E 5 HOH B 108 508 110 HOH HOH . 
E 5 HOH B 109 509 111 HOH HOH . 
E 5 HOH B 110 510 112 HOH HOH . 
E 5 HOH B 111 511 113 HOH HOH . 
E 5 HOH B 112 512 114 HOH HOH . 
E 5 HOH B 113 513 115 HOH HOH . 
E 5 HOH B 114 514 117 HOH HOH . 
E 5 HOH B 115 515 118 HOH HOH . 
E 5 HOH B 116 516 120 HOH HOH . 
E 5 HOH B 117 517 121 HOH HOH . 
E 5 HOH B 118 518 122 HOH HOH . 
E 5 HOH B 119 519 123 HOH HOH . 
E 5 HOH B 120 520 124 HOH HOH . 
E 5 HOH B 121 521 125 HOH HOH . 
E 5 HOH B 122 522 126 HOH HOH . 
E 5 HOH B 123 523 127 HOH HOH . 
E 5 HOH B 124 524 128 HOH HOH . 
E 5 HOH B 125 525 129 HOH HOH . 
E 5 HOH B 126 526 130 HOH HOH . 
E 5 HOH B 127 527 131 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA 2NX . . . C 3 20.769 4.569 -7.551 0.46 34.56 ? CAA 2NX 302 B 1 
HETATM 2 O OAK 2NX . . . C 3 21.24 4.919 -6.253 0.46 30.95 ? OAK 2NX 302 B 1 
HETATM 3 P PAO 2NX . . . C 3 21.58 3.786 -5.202 0.46 29.13 ? PAO 2NX 302 B 1 
HETATM 4 O OAL 2NX . . . C 3 22.503 4.572 -4.167 0.46 34 ? OAL 2NX 302 B 1 
HETATM 5 C CAB 2NX . . . C 3 22.344 5.984 -4.006 0.46 38.71 ? CAB 2NX 302 B 1 
HETATM 6 O OAD 2NX . . . C 3 22.406 2.775 -5.874 0.46 25.35 ? OAD 2NX 302 B 1 
HETATM 7 N NAJ 2NX . . . C 3 20.202 3.266 -4.418 0.46 25.95 ? NAJ 2NX 302 B 1 
HETATM 8 C CAM 2NX . . . C 3 20.428 2.577 -3.288 0.46 27.74 ? CAM 2NX 302 B 1 
HETATM 9 O OAC 2NX . . . C 3 21.556 2.346 -2.864 0.46 34.21 ? OAC 2NX 302 B 1 
HETATM 10 C CAN 2NX . . . C 3 19.331 2.043 -2.624 0.46 25.14 ? CAN 2NX 302 B 1 
HETATM 11 C CAH 2NX . . . C 3 19.294 2.054 -1.236 0.46 30.19 ? CAH 2NX 302 B 1 
HETATM 12 C CAF 2NX . . . C 3 18.215 1.494 -0.564 0.46 22.4 ? CAF 2NX 302 B 1 
HETATM 13 C CAE 2NX . . . C 3 17.18 0.905 -1.278 0.46 28.78 ? CAE 2NX 302 B 1 
HETATM 14 C CAG 2NX . . . C 3 17.223 0.879 -2.666 0.46 27.98 ? CAG 2NX 302 B 1 
HETATM 15 C CAI 2NX . . . C 3 18.305 1.437 -3.336 0.46 27.98 ? CAI 2NX 302 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           15 
#