data_4NVO
#
_model_server_result.job_id            kyY2uFj5svM4M25c3YuIiw 
_model_server_result.datetime_utc      '2025-06-18 04:21:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nvo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    4NVO 
#
_exptl.entry_id    4NVO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              190.265 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-(thiophen-2-yl)-6,7-dihydro-5H-pyrrolo[1,2-a]imidazole 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NVO 
_cell.length_a            51.34 
_cell.length_b            75.19 
_cell.length_c            105.53 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NVO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 172 B HIS 175 1_555 B FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? 
metalc ? metalc2 B FE HEM . B HEM 301 1_555 D O HOH . B HOH 478 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? 
#
_chem_comp.formula           'C10 H10 N2 S' 
_chem_comp.formula_weight    190.265 
_chem_comp.id                556 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-(thiophen-2-yl)-6,7-dihydro-5H-pyrrolo[1,2-a]imidazole 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAE CAG 556 sing 1 n n 
CAE CAF 556 sing 2 n n 
CAG NAM 556 sing 3 n n 
CAF CAK 556 sing 4 n n 
NAM CAK 556 sing 5 n y 
NAM CAL 556 sing 6 n y 
CAC CAA 556 sing 7 n y 
CAC CAJ 556 doub 8 n y 
CAK NAH 556 doub 9 n y 
CAA CAB 556 doub 10 n y 
CAL CAJ 556 sing 11 n n 
CAL CAD 556 doub 12 n y 
CAJ SAI 556 sing 13 n y 
NAH CAD 556 sing 14 n y 
CAB SAI 556 sing 15 n y 
CAF H1 556 sing 16 n n 
CAF H2 556 sing 17 n n 
CAE H3 556 sing 18 n n 
CAE H4 556 sing 19 n n 
CAG H5 556 sing 20 n n 
CAG H6 556 sing 21 n n 
CAD H7 556 sing 22 n n 
CAB H8 556 sing 23 n n 
CAA H9 556 sing 24 n n 
CAC H10 556 sing 25 n n 
#
_atom_sites.entry_id                     4NVO 
_atom_sites.fract_transf_matrix[1][1]    0.019478 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0133 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009476 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM B 1 301 1 HEM HEM . 
C 3 556 B 1 302 1 556 556 . 
D 4 HOH B 1 401 1 HOH HOH . 
D 4 HOH B 2 402 2 HOH HOH . 
D 4 HOH B 3 403 3 HOH HOH . 
D 4 HOH B 4 404 4 HOH HOH . 
D 4 HOH B 5 405 5 HOH HOH . 
D 4 HOH B 6 406 6 HOH HOH . 
D 4 HOH B 7 407 7 HOH HOH . 
D 4 HOH B 8 408 8 HOH HOH . 
D 4 HOH B 9 409 9 HOH HOH . 
D 4 HOH B 10 410 10 HOH HOH . 
D 4 HOH B 11 411 11 HOH HOH . 
D 4 HOH B 12 412 12 HOH HOH . 
D 4 HOH B 13 413 13 HOH HOH . 
D 4 HOH B 14 414 14 HOH HOH . 
D 4 HOH B 15 415 15 HOH HOH . 
D 4 HOH B 16 416 16 HOH HOH . 
D 4 HOH B 17 417 17 HOH HOH . 
D 4 HOH B 18 418 18 HOH HOH . 
D 4 HOH B 19 419 19 HOH HOH . 
D 4 HOH B 20 420 20 HOH HOH . 
D 4 HOH B 21 421 21 HOH HOH . 
D 4 HOH B 22 422 22 HOH HOH . 
D 4 HOH B 23 423 23 HOH HOH . 
D 4 HOH B 24 424 24 HOH HOH . 
D 4 HOH B 25 425 25 HOH HOH . 
D 4 HOH B 26 426 26 HOH HOH . 
D 4 HOH B 27 427 27 HOH HOH . 
D 4 HOH B 28 428 28 HOH HOH . 
D 4 HOH B 29 429 29 HOH HOH . 
D 4 HOH B 30 430 30 HOH HOH . 
D 4 HOH B 31 431 31 HOH HOH . 
D 4 HOH B 32 432 32 HOH HOH . 
D 4 HOH B 33 433 33 HOH HOH . 
D 4 HOH B 34 434 34 HOH HOH . 
D 4 HOH B 35 435 35 HOH HOH . 
D 4 HOH B 36 436 36 HOH HOH . 
D 4 HOH B 37 437 37 HOH HOH . 
D 4 HOH B 38 438 38 HOH HOH . 
D 4 HOH B 39 439 39 HOH HOH . 
D 4 HOH B 40 440 40 HOH HOH . 
D 4 HOH B 41 441 41 HOH HOH . 
D 4 HOH B 42 442 42 HOH HOH . 
D 4 HOH B 43 443 43 HOH HOH . 
D 4 HOH B 44 444 44 HOH HOH . 
D 4 HOH B 45 445 45 HOH HOH . 
D 4 HOH B 46 446 46 HOH HOH . 
D 4 HOH B 47 447 47 HOH HOH . 
D 4 HOH B 48 448 48 HOH HOH . 
D 4 HOH B 49 449 49 HOH HOH . 
D 4 HOH B 50 450 50 HOH HOH . 
D 4 HOH B 51 451 51 HOH HOH . 
D 4 HOH B 52 452 52 HOH HOH . 
D 4 HOH B 53 453 53 HOH HOH . 
D 4 HOH B 54 454 54 HOH HOH . 
D 4 HOH B 55 455 55 HOH HOH . 
D 4 HOH B 56 456 56 HOH HOH . 
D 4 HOH B 57 457 57 HOH HOH . 
D 4 HOH B 58 458 58 HOH HOH . 
D 4 HOH B 59 459 59 HOH HOH . 
D 4 HOH B 60 460 60 HOH HOH . 
D 4 HOH B 61 461 61 HOH HOH . 
D 4 HOH B 62 462 62 HOH HOH . 
D 4 HOH B 63 463 63 HOH HOH . 
D 4 HOH B 64 464 64 HOH HOH . 
D 4 HOH B 65 465 65 HOH HOH . 
D 4 HOH B 66 466 66 HOH HOH . 
D 4 HOH B 67 467 67 HOH HOH . 
D 4 HOH B 68 468 68 HOH HOH . 
D 4 HOH B 69 469 70 HOH HOH . 
D 4 HOH B 70 470 71 HOH HOH . 
D 4 HOH B 71 471 72 HOH HOH . 
D 4 HOH B 72 472 73 HOH HOH . 
D 4 HOH B 73 473 74 HOH HOH . 
D 4 HOH B 74 474 75 HOH HOH . 
D 4 HOH B 75 475 76 HOH HOH . 
D 4 HOH B 76 476 77 HOH HOH . 
D 4 HOH B 77 477 78 HOH HOH . 
D 4 HOH B 78 478 79 HOH HOH . 
D 4 HOH B 79 479 80 HOH HOH . 
D 4 HOH B 80 480 81 HOH HOH . 
D 4 HOH B 81 481 82 HOH HOH . 
D 4 HOH B 82 482 83 HOH HOH . 
D 4 HOH B 83 483 84 HOH HOH . 
D 4 HOH B 84 484 85 HOH HOH . 
D 4 HOH B 85 485 86 HOH HOH . 
D 4 HOH B 86 486 87 HOH HOH . 
D 4 HOH B 87 487 88 HOH HOH . 
D 4 HOH B 88 488 89 HOH HOH . 
D 4 HOH B 89 489 90 HOH HOH . 
D 4 HOH B 90 490 91 HOH HOH . 
D 4 HOH B 91 491 93 HOH HOH . 
D 4 HOH B 92 492 94 HOH HOH . 
D 4 HOH B 93 493 95 HOH HOH . 
D 4 HOH B 94 494 96 HOH HOH . 
D 4 HOH B 95 495 97 HOH HOH . 
D 4 HOH B 96 496 98 HOH HOH . 
D 4 HOH B 97 497 99 HOH HOH . 
D 4 HOH B 98 498 100 HOH HOH . 
D 4 HOH B 99 499 101 HOH HOH . 
D 4 HOH B 100 500 103 HOH HOH . 
D 4 HOH B 101 501 104 HOH HOH . 
D 4 HOH B 102 502 105 HOH HOH . 
D 4 HOH B 103 503 106 HOH HOH . 
D 4 HOH B 104 504 107 HOH HOH . 
D 4 HOH B 105 505 108 HOH HOH . 
D 4 HOH B 106 506 109 HOH HOH . 
D 4 HOH B 107 507 110 HOH HOH . 
D 4 HOH B 108 508 111 HOH HOH . 
D 4 HOH B 109 509 112 HOH HOH . 
D 4 HOH B 110 510 113 HOH HOH . 
D 4 HOH B 111 511 114 HOH HOH . 
D 4 HOH B 112 512 115 HOH HOH . 
D 4 HOH B 113 513 116 HOH HOH . 
D 4 HOH B 114 514 117 HOH HOH . 
D 4 HOH B 115 515 118 HOH HOH . 
D 4 HOH B 116 516 119 HOH HOH . 
D 4 HOH B 117 517 120 HOH HOH . 
D 4 HOH B 118 518 121 HOH HOH . 
D 4 HOH B 119 519 122 HOH HOH . 
D 4 HOH B 120 520 123 HOH HOH . 
D 4 HOH B 121 521 124 HOH HOH . 
D 4 HOH B 122 522 125 HOH HOH . 
D 4 HOH B 123 523 126 HOH HOH . 
D 4 HOH B 124 524 127 HOH HOH . 
D 4 HOH B 125 525 129 HOH HOH . 
D 4 HOH B 126 526 130 HOH HOH . 
D 4 HOH B 127 527 131 HOH HOH . 
D 4 HOH B 128 528 132 HOH HOH . 
D 4 HOH B 129 529 133 HOH HOH . 
D 4 HOH B 130 530 134 HOH HOH . 
D 4 HOH B 131 531 135 HOH HOH . 
D 4 HOH B 132 532 136 HOH HOH . 
D 4 HOH B 133 533 137 HOH HOH . 
D 4 HOH B 134 534 138 HOH HOH . 
D 4 HOH B 135 535 139 HOH HOH . 
D 4 HOH B 136 536 140 HOH HOH . 
D 4 HOH B 137 537 141 HOH HOH . 
D 4 HOH B 138 538 142 HOH HOH . 
D 4 HOH B 139 539 143 HOH HOH . 
D 4 HOH B 140 540 144 HOH HOH . 
D 4 HOH B 141 541 145 HOH HOH . 
D 4 HOH B 142 542 146 HOH HOH . 
D 4 HOH B 143 543 149 HOH HOH . 
D 4 HOH B 144 544 150 HOH HOH . 
D 4 HOH B 145 545 151 HOH HOH . 
D 4 HOH B 146 546 152 HOH HOH . 
D 4 HOH B 147 547 153 HOH HOH . 
D 4 HOH B 148 548 154 HOH HOH . 
D 4 HOH B 149 549 156 HOH HOH . 
D 4 HOH B 150 550 157 HOH HOH . 
D 4 HOH B 151 551 158 HOH HOH . 
D 4 HOH B 152 552 159 HOH HOH . 
D 4 HOH B 153 553 160 HOH HOH . 
D 4 HOH B 154 554 161 HOH HOH . 
D 4 HOH B 155 555 163 HOH HOH . 
D 4 HOH B 156 556 164 HOH HOH . 
D 4 HOH B 157 557 166 HOH HOH . 
D 4 HOH B 158 558 167 HOH HOH . 
D 4 HOH B 159 559 168 HOH HOH . 
D 4 HOH B 160 560 169 HOH HOH . 
D 4 HOH B 161 561 170 HOH HOH . 
D 4 HOH B 162 562 172 HOH HOH . 
D 4 HOH B 163 563 174 HOH HOH . 
D 4 HOH B 164 564 175 HOH HOH . 
D 4 HOH B 165 565 176 HOH HOH . 
D 4 HOH B 166 566 177 HOH HOH . 
D 4 HOH B 167 567 178 HOH HOH . 
D 4 HOH B 168 568 180 HOH HOH . 
D 4 HOH B 169 569 181 HOH HOH . 
D 4 HOH B 170 570 182 HOH HOH . 
D 4 HOH B 171 571 184 HOH HOH . 
D 4 HOH B 172 572 185 HOH HOH . 
D 4 HOH B 173 573 186 HOH HOH . 
D 4 HOH B 174 574 187 HOH HOH . 
D 4 HOH B 175 575 188 HOH HOH . 
D 4 HOH B 176 576 189 HOH HOH . 
D 4 HOH B 177 577 190 HOH HOH . 
D 4 HOH B 178 578 191 HOH HOH . 
D 4 HOH B 179 579 192 HOH HOH . 
D 4 HOH B 180 580 193 HOH HOH . 
D 4 HOH B 181 581 195 HOH HOH . 
D 4 HOH B 182 582 196 HOH HOH . 
D 4 HOH B 183 583 198 HOH HOH . 
D 4 HOH B 184 584 199 HOH HOH . 
D 4 HOH B 185 585 200 HOH HOH . 
D 4 HOH B 186 586 202 HOH HOH . 
D 4 HOH B 187 587 203 HOH HOH . 
D 4 HOH B 188 588 204 HOH HOH . 
D 4 HOH B 189 589 205 HOH HOH . 
D 4 HOH B 190 590 206 HOH HOH . 
D 4 HOH B 191 591 207 HOH HOH . 
D 4 HOH B 192 592 208 HOH HOH . 
D 4 HOH B 193 593 210 HOH HOH . 
D 4 HOH B 194 594 211 HOH HOH . 
D 4 HOH B 195 595 212 HOH HOH . 
D 4 HOH B 196 596 214 HOH HOH . 
D 4 HOH B 197 597 215 HOH HOH . 
D 4 HOH B 198 598 216 HOH HOH . 
D 4 HOH B 199 599 217 HOH HOH . 
D 4 HOH B 200 600 218 HOH HOH . 
D 4 HOH B 201 601 219 HOH HOH . 
D 4 HOH B 202 602 220 HOH HOH . 
D 4 HOH B 203 603 221 HOH HOH . 
D 4 HOH B 204 604 222 HOH HOH . 
D 4 HOH B 205 605 223 HOH HOH . 
D 4 HOH B 206 606 224 HOH HOH . 
D 4 HOH B 207 607 225 HOH HOH . 
D 4 HOH B 208 608 226 HOH HOH . 
D 4 HOH B 209 609 227 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAF 556 . . . C 3 -16.44 1.923 3.08 1 16.24 ? CAF 556 302 B 1 
HETATM 2 C CAE 556 . . . C 3 -17.451 1.903 1.962 1 17.01 ? CAE 556 302 B 1 
HETATM 3 C CAG 556 . . . C 3 -18.715 2.34 2.628 1 16.58 ? CAG 556 302 B 1 
HETATM 4 N NAM 556 . . . C 3 -18.275 2.94 3.899 1 16.43 ? NAM 556 302 B 1 
HETATM 5 C CAK 556 . . . C 3 -16.983 2.684 4.118 1 15.72 ? CAK 556 302 B 1 
HETATM 6 N NAH 556 . . . C 3 -16.653 3.251 5.28 1 17.18 ? NAH 556 302 B 1 
HETATM 7 C CAD 556 . . . C 3 -17.72 3.857 5.786 1 16.42 ? CAD 556 302 B 1 
HETATM 8 C CAL 556 . . . C 3 -18.708 3.656 4.928 1 16.57 ? CAL 556 302 B 1 
HETATM 9 C CAJ 556 . . . C 3 -19.956 4.105 5.072 1 20.71 ? CAJ 556 302 B 1 
HETATM 10 S SAI 556 . . . C 3 -20.702 4.511 6.497 1 29.55 ? SAI 556 302 B 1 
HETATM 11 C CAB 556 . . . C 3 -22.139 4.937 5.8 1 25.56 ? CAB 556 302 B 1 
HETATM 12 C CAA 556 . . . C 3 -22.014 4.753 4.479 1 23.34 ? CAA 556 302 B 1 
HETATM 13 C CAC 556 . . . C 3 -20.817 4.293 4.07 1 16.89 ? CAC 556 302 B 1 
#
_model_server_stats.io_time_ms              92 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           13 
#