data_4NWD
#
_model_server_result.job_id            '_pGSTYahzKxhr9PCyqb4iw' 
_model_server_result.datetime_utc      '2024-10-13 02:25:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nwd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":301}' 
#
_entry.id    4NWD 
#
_exptl.entry_id    4NWD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              232.234 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(4R)-4-[3-(methylamino)-3-oxopropyl]-L-glutamic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NWD 
_cell.length_a            68.65 
_cell.length_b            68.65 
_cell.length_c            126.83 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NWD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 203 A CYS 203 1_555 A SG CYS 257 A CYS 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc1 A O SER 24 A SER 24 1_555 C K K . A K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? 
metalc ? metalc2 A O ARG 26 A ARG 26 1_555 C K K . A K 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc3 A OG SER 52 A SER 52 1_555 D K K . A K 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? 
metalc ? metalc4 D K K . A K 303 1_555 F O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.016 ? 
#
_chem_comp.formula           'C9 H16 N2 O5' 
_chem_comp.formula_weight    232.234 
_chem_comp.id                2QD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(4R)-4-[3-(methylamino)-3-oxopropyl]-L-glutamic acid' 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAH CD1 2QD sing 1 n n 
CAH CAN 2QD sing 2 n n 
CD1 CG 2QD sing 3 n n 
CAN NAK 2QD sing 4 n n 
CAN OAE 2QD doub 5 n n 
NAK CAA 2QD sing 6 n n 
CG CB 2QD sing 7 n n 
CG CD2 2QD sing 8 n n 
CB CA 2QD sing 9 n n 
OAG CD2 2QD doub 10 n n 
CD2 OAD 2QD sing 11 n n 
O C 2QD doub 12 n n 
CA C 2QD sing 13 n n 
CA N 2QD sing 14 n n 
C OXT 2QD sing 15 n n 
OXT H1 2QD sing 16 n n 
CA H2 2QD sing 17 n n 
N H3 2QD sing 18 n n 
N H4 2QD sing 19 n n 
CB H6 2QD sing 20 n n 
CB H7 2QD sing 21 n n 
CG H8 2QD sing 22 n n 
OAD H9 2QD sing 23 n n 
CD1 H10 2QD sing 24 n n 
CD1 H11 2QD sing 25 n n 
CAH H12 2QD sing 26 n n 
CAH H13 2QD sing 27 n n 
NAK H14 2QD sing 28 n n 
CAA H15 2QD sing 29 n n 
CAA H16 2QD sing 30 n n 
CAA H17 2QD sing 31 n n 
#
_atom_sites.entry_id                     4NWD 
_atom_sites.fract_transf_matrix[1][1]    0.014567 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014567 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007885 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 2QD A 1 301 1 2QD DRG . 
C 3 K A 1 302 1 K K . 
D 3 K A 1 303 2 K K . 
E 4 CL A 1 304 1 CL CL . 
F 5 HOH A 1 401 3 HOH HOH . 
F 5 HOH A 2 402 4 HOH HOH . 
F 5 HOH A 3 403 5 HOH HOH . 
F 5 HOH A 4 404 6 HOH HOH . 
F 5 HOH A 5 405 7 HOH HOH . 
F 5 HOH A 6 406 9 HOH HOH . 
F 5 HOH A 7 407 11 HOH HOH . 
F 5 HOH A 8 408 12 HOH HOH . 
F 5 HOH A 9 409 13 HOH HOH . 
F 5 HOH A 10 410 14 HOH HOH . 
F 5 HOH A 11 411 16 HOH HOH . 
F 5 HOH A 12 412 17 HOH HOH . 
F 5 HOH A 13 413 19 HOH HOH . 
F 5 HOH A 14 414 21 HOH HOH . 
F 5 HOH A 15 415 22 HOH HOH . 
F 5 HOH A 16 416 23 HOH HOH . 
F 5 HOH A 17 417 24 HOH HOH . 
F 5 HOH A 18 418 26 HOH HOH . 
F 5 HOH A 19 419 27 HOH HOH . 
F 5 HOH A 20 420 29 HOH HOH . 
F 5 HOH A 21 421 31 HOH HOH . 
F 5 HOH A 22 422 32 HOH HOH . 
F 5 HOH A 23 423 33 HOH HOH . 
F 5 HOH A 24 424 38 HOH HOH . 
F 5 HOH A 25 425 39 HOH HOH . 
F 5 HOH A 26 426 40 HOH HOH . 
F 5 HOH A 27 427 41 HOH HOH . 
F 5 HOH A 28 428 43 HOH HOH . 
F 5 HOH A 29 429 46 HOH HOH . 
F 5 HOH A 30 430 51 HOH HOH . 
F 5 HOH A 31 431 53 HOH HOH . 
F 5 HOH A 32 432 54 HOH HOH . 
F 5 HOH A 33 433 56 HOH HOH . 
F 5 HOH A 34 434 57 HOH HOH . 
F 5 HOH A 35 435 58 HOH HOH . 
F 5 HOH A 36 436 59 HOH HOH . 
F 5 HOH A 37 437 60 HOH HOH . 
F 5 HOH A 38 438 61 HOH HOH . 
F 5 HOH A 39 439 62 HOH HOH . 
F 5 HOH A 40 440 63 HOH HOH . 
F 5 HOH A 41 441 64 HOH HOH . 
F 5 HOH A 42 442 65 HOH HOH . 
F 5 HOH A 43 443 66 HOH HOH . 
F 5 HOH A 44 444 67 HOH HOH . 
F 5 HOH A 45 445 70 HOH HOH . 
F 5 HOH A 46 446 72 HOH HOH . 
F 5 HOH A 47 447 73 HOH HOH . 
F 5 HOH A 48 448 74 HOH HOH . 
F 5 HOH A 49 449 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O 2QD . . . B 2 -1.089 30.876 -13.939 1 32.59 ? O 2QD 301 A 1 
HETATM 2 C C 2QD . . . B 2 -2.219 31.158 -13.45 1 32.59 ? C 2QD 301 A 1 
HETATM 3 O OXT 2QD . . . B 2 -2.494 32.19 -12.783 1 32.59 ? OXT 2QD 301 A 1 
HETATM 4 C CA 2QD . . . B 2 -3.355 30.158 -13.671 1 32.59 ? CA 2QD 301 A 1 
HETATM 5 N N 2QD . . . B 2 -4.556 30.652 -12.995 1 32.59 ? N 2QD 301 A 1 
HETATM 6 C CB 2QD . . . B 2 -3.598 29.899 -15.176 1 32.59 ? CB 2QD 301 A 1 
HETATM 7 C CG 2QD . . . B 2 -4.313 28.559 -15.478 1 32.59 ? CG 2QD 301 A 1 
HETATM 8 C CD2 2QD . . . B 2 -3.619 27.381 -14.791 1 32.59 ? CD2 2QD 301 A 1 
HETATM 9 O OAG 2QD . . . B 2 -2.358 27.368 -14.857 1 32.59 ? OAG 2QD 301 A 1 
HETATM 10 O OAD 2QD . . . B 2 -4.37 26.534 -14.247 1 32.59 ? OAD 2QD 301 A 1 
HETATM 11 C CD1 2QD . . . B 2 -4.379 28.24 -16.991 1 32.59 ? CD1 2QD 301 A 1 
HETATM 12 C CAH 2QD . . . B 2 -5.667 28.724 -17.656 1 32.59 ? CAH 2QD 301 A 1 
HETATM 13 C CAN 2QD . . . B 2 -6.884 28.666 -16.736 1 32.59 ? CAN 2QD 301 A 1 
HETATM 14 O OAE 2QD . . . B 2 -7.307 27.58 -16.294 1 32.59 ? OAE 2QD 301 A 1 
HETATM 15 N NAK 2QD . . . B 2 -7.41 29.888 -16.475 1 32.59 ? NAK 2QD 301 A 1 
HETATM 16 C CAA 2QD . . . B 2 -8.601 29.959 -15.597 1 32.59 ? CAA 2QD 301 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           279 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           16 
#