data_4NWK # _model_server_result.job_id y-VGCWRqM0B_CBGh8JR08g _model_server_result.datetime_utc '2024-12-04 10:10:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nwk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":305}' # _entry.id 4NWK # _exptl.entry_id 4NWK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NWK _cell.length_a 43.197 _cell.length_b 103.852 _cell.length_c 45.298 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NWK _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 112 A CYS 97 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc2 A SG CYS 114 A CYS 99 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc3 A SG CYS 160 A CYS 145 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 230 n n C1 C2 GOL sing 231 n n C1 H11 GOL sing 232 n n C1 H12 GOL sing 233 n n O1 HO1 GOL sing 234 n n C2 O2 GOL sing 235 n n C2 C3 GOL sing 236 n n C2 H2 GOL sing 237 n n O2 HO2 GOL sing 238 n n C3 O3 GOL sing 239 n n C3 H31 GOL sing 240 n n C3 H32 GOL sing 241 n n O3 HO3 GOL sing 242 n n # _atom_sites.entry_id 4NWK _atom_sites.fract_transf_matrix[1][1] 0.02315 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009629 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022076 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2R8 A 1 301 1 2R8 INH . C 3 ZN A 1 302 1 ZN ZN2 . D 4 SO4 A 1 303 172 SO4 SO4 . E 5 GOL A 1 304 188 GOL GOL . F 5 GOL A 1 305 189 GOL GOL . G 5 GOL A 1 306 190 GOL GOL . H 5 GOL A 1 307 191 GOL GOL . I 5 GOL A 1 308 192 GOL GOL . J 5 GOL A 1 309 283 GOL GOL . K 5 GOL A 1 310 284 GOL GOL . L 6 HOH A 1 401 2 HOH HOH . L 6 HOH A 2 402 3 HOH HOH . L 6 HOH A 3 403 4 HOH HOH . L 6 HOH A 4 404 5 HOH HOH . L 6 HOH A 5 405 8 HOH HOH . L 6 HOH A 6 406 9 HOH HOH . L 6 HOH A 7 407 10 HOH HOH . L 6 HOH A 8 408 11 HOH HOH . L 6 HOH A 9 409 12 HOH HOH . L 6 HOH A 10 410 17 HOH HOH . L 6 HOH A 11 411 18 HOH HOH . L 6 HOH A 12 412 19 HOH HOH . L 6 HOH A 13 413 20 HOH HOH . L 6 HOH A 14 414 21 HOH HOH . L 6 HOH A 15 415 23 HOH HOH . L 6 HOH A 16 416 24 HOH HOH . L 6 HOH A 17 417 25 HOH HOH . L 6 HOH A 18 418 26 HOH HOH . L 6 HOH A 19 419 27 HOH HOH . L 6 HOH A 20 420 30 HOH HOH . L 6 HOH A 21 421 31 HOH HOH . L 6 HOH A 22 422 32 HOH HOH . L 6 HOH A 23 423 33 HOH HOH . L 6 HOH A 24 424 34 HOH HOH . L 6 HOH A 25 425 35 HOH HOH . L 6 HOH A 26 426 36 HOH HOH . L 6 HOH A 27 427 39 HOH HOH . L 6 HOH A 28 428 40 HOH HOH . L 6 HOH A 29 429 41 HOH HOH . L 6 HOH A 30 430 42 HOH HOH . L 6 HOH A 31 431 43 HOH HOH . L 6 HOH A 32 432 46 HOH HOH . L 6 HOH A 33 433 47 HOH HOH . L 6 HOH A 34 434 48 HOH HOH . L 6 HOH A 35 435 50 HOH HOH . L 6 HOH A 36 436 51 HOH HOH . L 6 HOH A 37 437 52 HOH HOH . L 6 HOH A 38 438 53 HOH HOH . L 6 HOH A 39 439 54 HOH HOH . L 6 HOH A 40 440 60 HOH HOH . L 6 HOH A 41 441 61 HOH HOH . L 6 HOH A 42 442 62 HOH HOH . L 6 HOH A 43 443 65 HOH HOH . L 6 HOH A 44 444 66 HOH HOH . L 6 HOH A 45 445 67 HOH HOH . L 6 HOH A 46 446 70 HOH HOH . L 6 HOH A 47 447 71 HOH HOH . L 6 HOH A 48 448 72 HOH HOH . L 6 HOH A 49 449 73 HOH HOH . L 6 HOH A 50 450 74 HOH HOH . L 6 HOH A 51 451 76 HOH HOH . L 6 HOH A 52 452 78 HOH HOH . L 6 HOH A 53 453 80 HOH HOH . L 6 HOH A 54 454 81 HOH HOH . L 6 HOH A 55 455 83 HOH HOH . L 6 HOH A 56 456 84 HOH HOH . L 6 HOH A 57 457 86 HOH HOH . L 6 HOH A 58 458 87 HOH HOH . L 6 HOH A 59 459 89 HOH HOH . L 6 HOH A 60 460 90 HOH HOH . L 6 HOH A 61 461 92 HOH HOH . L 6 HOH A 62 462 93 HOH HOH . L 6 HOH A 63 463 94 HOH HOH . L 6 HOH A 64 464 95 HOH HOH . L 6 HOH A 65 465 96 HOH HOH . L 6 HOH A 66 466 97 HOH HOH . L 6 HOH A 67 467 99 HOH HOH . L 6 HOH A 68 468 100 HOH HOH . L 6 HOH A 69 469 101 HOH HOH . L 6 HOH A 70 470 102 HOH HOH . L 6 HOH A 71 471 104 HOH HOH . L 6 HOH A 72 472 105 HOH HOH . L 6 HOH A 73 473 106 HOH HOH . L 6 HOH A 74 474 107 HOH HOH . L 6 HOH A 75 475 108 HOH HOH . L 6 HOH A 76 476 109 HOH HOH . L 6 HOH A 77 477 110 HOH HOH . L 6 HOH A 78 478 111 HOH HOH . L 6 HOH A 79 479 113 HOH HOH . L 6 HOH A 80 480 116 HOH HOH . L 6 HOH A 81 481 117 HOH HOH . L 6 HOH A 82 482 118 HOH HOH . L 6 HOH A 83 483 121 HOH HOH . L 6 HOH A 84 484 122 HOH HOH . L 6 HOH A 85 485 123 HOH HOH . L 6 HOH A 86 486 124 HOH HOH . L 6 HOH A 87 487 125 HOH HOH . L 6 HOH A 88 488 126 HOH HOH . L 6 HOH A 89 489 128 HOH HOH . L 6 HOH A 90 490 129 HOH HOH . L 6 HOH A 91 491 130 HOH HOH . L 6 HOH A 92 492 131 HOH HOH . L 6 HOH A 93 493 132 HOH HOH . L 6 HOH A 94 494 133 HOH HOH . L 6 HOH A 95 495 134 HOH HOH . L 6 HOH A 96 496 135 HOH HOH . L 6 HOH A 97 497 136 HOH HOH . L 6 HOH A 98 498 137 HOH HOH . L 6 HOH A 99 499 138 HOH HOH . L 6 HOH A 100 500 139 HOH HOH . L 6 HOH A 101 501 140 HOH HOH . L 6 HOH A 102 502 143 HOH HOH . L 6 HOH A 103 503 144 HOH HOH . L 6 HOH A 104 504 145 HOH HOH . L 6 HOH A 105 505 146 HOH HOH . L 6 HOH A 106 506 148 HOH HOH . L 6 HOH A 107 507 149 HOH HOH . L 6 HOH A 108 508 150 HOH HOH . L 6 HOH A 109 509 151 HOH HOH . L 6 HOH A 110 510 152 HOH HOH . L 6 HOH A 111 511 153 HOH HOH . L 6 HOH A 112 512 155 HOH HOH . L 6 HOH A 113 513 157 HOH HOH . L 6 HOH A 114 514 163 HOH HOH . L 6 HOH A 115 515 164 HOH HOH . L 6 HOH A 116 516 166 HOH HOH . L 6 HOH A 117 517 169 HOH HOH . L 6 HOH A 118 518 171 HOH HOH . L 6 HOH A 119 519 173 HOH HOH . L 6 HOH A 120 520 175 HOH HOH . L 6 HOH A 121 521 176 HOH HOH . L 6 HOH A 122 522 177 HOH HOH . L 6 HOH A 123 523 178 HOH HOH . L 6 HOH A 124 524 179 HOH HOH . L 6 HOH A 125 525 180 HOH HOH . L 6 HOH A 126 526 181 HOH HOH . L 6 HOH A 127 527 182 HOH HOH . L 6 HOH A 128 528 183 HOH HOH . L 6 HOH A 129 529 184 HOH HOH . L 6 HOH A 130 530 185 HOH HOH . L 6 HOH A 131 531 186 HOH HOH . L 6 HOH A 132 532 187 HOH HOH . L 6 HOH A 133 533 194 HOH HOH . L 6 HOH A 134 534 196 HOH HOH . L 6 HOH A 135 535 198 HOH HOH . L 6 HOH A 136 536 199 HOH HOH . L 6 HOH A 137 537 200 HOH HOH . L 6 HOH A 138 538 201 HOH HOH . L 6 HOH A 139 539 202 HOH HOH . L 6 HOH A 140 540 203 HOH HOH . L 6 HOH A 141 541 206 HOH HOH . L 6 HOH A 142 542 207 HOH HOH . L 6 HOH A 143 543 208 HOH HOH . L 6 HOH A 144 544 209 HOH HOH . L 6 HOH A 145 545 210 HOH HOH . L 6 HOH A 146 546 211 HOH HOH . L 6 HOH A 147 547 212 HOH HOH . L 6 HOH A 148 548 213 HOH HOH . L 6 HOH A 149 549 214 HOH HOH . L 6 HOH A 150 550 215 HOH HOH . L 6 HOH A 151 551 216 HOH HOH . L 6 HOH A 152 552 217 HOH HOH . L 6 HOH A 153 553 218 HOH HOH . L 6 HOH A 154 554 219 HOH HOH . L 6 HOH A 155 555 220 HOH HOH . L 6 HOH A 156 556 222 HOH HOH . L 6 HOH A 157 557 223 HOH HOH . L 6 HOH A 158 558 224 HOH HOH . L 6 HOH A 159 559 227 HOH HOH . L 6 HOH A 160 560 228 HOH HOH . L 6 HOH A 161 561 229 HOH HOH . L 6 HOH A 162 562 232 HOH HOH . L 6 HOH A 163 563 233 HOH HOH . L 6 HOH A 164 564 234 HOH HOH . L 6 HOH A 165 565 235 HOH HOH . L 6 HOH A 166 566 236 HOH HOH . L 6 HOH A 167 567 237 HOH HOH . L 6 HOH A 168 568 238 HOH HOH . L 6 HOH A 169 569 239 HOH HOH . L 6 HOH A 170 570 240 HOH HOH . L 6 HOH A 171 571 241 HOH HOH . L 6 HOH A 172 572 242 HOH HOH . L 6 HOH A 173 573 243 HOH HOH . L 6 HOH A 174 574 244 HOH HOH . L 6 HOH A 175 575 245 HOH HOH . L 6 HOH A 176 576 246 HOH HOH . L 6 HOH A 177 577 250 HOH HOH . L 6 HOH A 178 578 251 HOH HOH . L 6 HOH A 179 579 252 HOH HOH . L 6 HOH A 180 580 253 HOH HOH . L 6 HOH A 181 581 254 HOH HOH . L 6 HOH A 182 582 255 HOH HOH . L 6 HOH A 183 583 257 HOH HOH . L 6 HOH A 184 584 258 HOH HOH . L 6 HOH A 185 585 259 HOH HOH . L 6 HOH A 186 586 260 HOH HOH . L 6 HOH A 187 587 261 HOH HOH . L 6 HOH A 188 588 265 HOH HOH . L 6 HOH A 189 589 266 HOH HOH . L 6 HOH A 190 590 267 HOH HOH . L 6 HOH A 191 591 268 HOH HOH . L 6 HOH A 192 592 269 HOH HOH . L 6 HOH A 193 593 270 HOH HOH . L 6 HOH A 194 594 271 HOH HOH . L 6 HOH A 195 595 272 HOH HOH . L 6 HOH A 196 596 274 HOH HOH . L 6 HOH A 197 597 275 HOH HOH . L 6 HOH A 198 598 276 HOH HOH . L 6 HOH A 199 599 277 HOH HOH . L 6 HOH A 200 600 279 HOH HOH . L 6 HOH A 201 601 281 HOH HOH . L 6 HOH A 202 602 282 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 46.357 79.838 7.751 1 25.24 ? C1 GOL 305 A 1 HETATM 2 O O1 GOL . . . F 5 47.76 79.546 7.834 1 29.82 ? O1 GOL 305 A 1 HETATM 3 C C2 GOL . . . F 5 45.513 78.741 8.403 1 24.66 ? C2 GOL 305 A 1 HETATM 4 O O2 GOL . . . F 5 45.862 78.601 9.814 1 22.88 ? O2 GOL 305 A 1 HETATM 5 C C3 GOL . . . F 5 44.052 79.172 8.244 1 24.41 ? C3 GOL 305 A 1 HETATM 6 O O3 GOL . . . F 5 43.156 78.144 8.71 1 27.44 ? O3 GOL 305 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #