data_4NXA # _model_server_result.job_id i0hS4yNGddGpTlGiicC4gw _model_server_result.datetime_utc '2024-11-25 07:48:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nxa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":211}' # _entry.id 4NXA # _exptl.entry_id 4NXA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 131.293 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description XENON _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.48 _cell.angle_gamma 90 _cell.entry_id 4NXA _cell.length_a 35.37 _cell.length_b 30.717 _cell.length_c 63.583 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NXA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 37 A HIS 36 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc2 A OE2 GLU 39 A GLU 38 1_555 C ZN ZN . A ZN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? metalc ? metalc3 A OE2 GLU 60 A GLU 59 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.854 ? metalc ? metalc4 A NZ LYS 63 A LYS 62 1_555 D ZN ZN . A ZN 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc5 A NE2 HIS 94 A HIS 93 1_555 B FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc6 B FE HEM . A HEM 201 1_555 M O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? # _chem_comp.formula Xe _chem_comp.formula_weight 131.293 _chem_comp.id XE _chem_comp.mon_nstd_flag . _chem_comp.name XENON _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4NXA _atom_sites.fract_transf_matrix[1][1] 0.028272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007302 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032555 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 201 160 HEM HEM . C 3 ZN A 1 202 170 ZN ZN . D 3 ZN A 1 203 171 ZN ZN . E 4 SO4 A 1 204 172 SO4 SO4 . F 4 SO4 A 1 205 173 SO4 SO4 . G 4 SO4 A 1 206 174 SO4 SO4 . H 5 XE A 1 207 181 XE XE . I 5 XE A 1 208 182 XE XE . J 5 XE A 1 209 183 XE XE . K 5 XE A 1 210 184 XE XE . L 5 XE A 1 211 185 XE XE . M 6 HOH A 1 301 201 HOH HOH . M 6 HOH A 2 302 202 HOH HOH . M 6 HOH A 3 303 203 HOH HOH . M 6 HOH A 4 304 204 HOH HOH . M 6 HOH A 5 305 205 HOH HOH . M 6 HOH A 6 306 206 HOH HOH . M 6 HOH A 7 307 207 HOH HOH . M 6 HOH A 8 308 208 HOH HOH . M 6 HOH A 9 309 209 HOH HOH . M 6 HOH A 10 310 210 HOH HOH . M 6 HOH A 11 311 211 HOH HOH . M 6 HOH A 12 312 212 HOH HOH . M 6 HOH A 13 313 213 HOH HOH . M 6 HOH A 14 314 214 HOH HOH . M 6 HOH A 15 315 215 HOH HOH . M 6 HOH A 16 316 216 HOH HOH . M 6 HOH A 17 317 217 HOH HOH . M 6 HOH A 18 318 218 HOH HOH . M 6 HOH A 19 319 219 HOH HOH . M 6 HOH A 20 320 220 HOH HOH . M 6 HOH A 21 321 221 HOH HOH . M 6 HOH A 22 322 222 HOH HOH . M 6 HOH A 23 323 223 HOH HOH . M 6 HOH A 24 324 224 HOH HOH . M 6 HOH A 25 325 225 HOH HOH . M 6 HOH A 26 326 226 HOH HOH . M 6 HOH A 27 327 227 HOH HOH . M 6 HOH A 28 328 228 HOH HOH . M 6 HOH A 29 329 229 HOH HOH . M 6 HOH A 30 330 230 HOH HOH . M 6 HOH A 31 331 231 HOH HOH . M 6 HOH A 32 332 232 HOH HOH . M 6 HOH A 33 333 234 HOH HOH . M 6 HOH A 34 334 235 HOH HOH . M 6 HOH A 35 335 236 HOH HOH . M 6 HOH A 36 336 237 HOH HOH . M 6 HOH A 37 337 242 HOH HOH . M 6 HOH A 38 338 243 HOH HOH . M 6 HOH A 39 339 244 HOH HOH . M 6 HOH A 40 340 253 HOH HOH . M 6 HOH A 41 341 254 HOH HOH . M 6 HOH A 42 342 255 HOH HOH . M 6 HOH A 43 343 261 HOH HOH . M 6 HOH A 44 344 264 HOH HOH . M 6 HOH A 45 345 265 HOH HOH . M 6 HOH A 46 346 266 HOH HOH . M 6 HOH A 47 347 267 HOH HOH . M 6 HOH A 48 348 270 HOH HOH . M 6 HOH A 49 349 272 HOH HOH . M 6 HOH A 50 350 278 HOH HOH . M 6 HOH A 51 351 279 HOH HOH . M 6 HOH A 52 352 282 HOH HOH . M 6 HOH A 53 353 290 HOH HOH . M 6 HOH A 54 354 299 HOH HOH . M 6 HOH A 55 355 300 HOH HOH . M 6 HOH A 56 356 301 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol XE _atom_site.label_atom_id XE _atom_site.label_comp_id XE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 5 _atom_site.Cartn_x 0.948 _atom_site.Cartn_y 4.403 _atom_site.Cartn_z 10.502 _atom_site.occupancy 0.15 _atom_site.B_iso_or_equiv 31.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id XE _atom_site.auth_comp_id XE _atom_site.auth_seq_id 211 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #