data_4NXB # _model_server_result.job_id Exe7XZzWKRAZNN2asG1EZg _model_server_result.datetime_utc '2025-01-11 14:57:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nxb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 4NXB # _exptl.entry_id 4NXB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 83.88 _cell.angle_beta 78.35 _cell.angle_gamma 80.4 _cell.entry_id 4NXB _cell.length_a 33.978 _cell.length_b 37.696 _cell.length_c 53.968 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NXB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 99 A PHE 485 1_555 A N 2LT 100 A 2LT 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C 2LT 100 A 2LT 486 1_555 A N GLY 101 A GLY 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale3 B C PHE 99 B PHE 485 1_555 B N 2LT 100 B 2LT 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 B C 2LT 100 B 2LT 486 1_555 B N GLY 101 B GLY 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 107 n n N1 C10 FMN doub 108 n n C2 O2 FMN doub 109 n n C2 N3 FMN sing 110 n n N3 C4 FMN sing 111 n n N3 HN3 FMN sing 112 n n C4 O4 FMN doub 113 n n C4 C4A FMN sing 114 n n C4A N5 FMN doub 115 n n C4A C10 FMN sing 116 n n N5 C5A FMN sing 117 n n C5A C6 FMN doub 118 n y C5A C9A FMN sing 119 n y C6 C7 FMN sing 120 n y C6 H6 FMN sing 121 n n C7 C7M FMN sing 122 n n C7 C8 FMN doub 123 n y C7M HM71 FMN sing 124 n n C7M HM72 FMN sing 125 n n C7M HM73 FMN sing 126 n n C8 C8M FMN sing 127 n n C8 C9 FMN sing 128 n y C8M HM81 FMN sing 129 n n C8M HM82 FMN sing 130 n n C8M HM83 FMN sing 131 n n C9 C9A FMN doub 132 n y C9 H9 FMN sing 133 n n C9A N10 FMN sing 134 n n N10 C10 FMN sing 135 n n N10 C1' FMN sing 136 n n C1' C2' FMN sing 137 n n C1' "H1'1" FMN sing 138 n n C1' "H1'2" FMN sing 139 n n C2' O2' FMN sing 140 n n C2' C3' FMN sing 141 n n C2' H2' FMN sing 142 n n O2' HO2' FMN sing 143 n n C3' O3' FMN sing 144 n n C3' C4' FMN sing 145 n n C3' H3' FMN sing 146 n n O3' HO3' FMN sing 147 n n C4' O4' FMN sing 148 n n C4' C5' FMN sing 149 n n C4' H4' FMN sing 150 n n O4' HO4' FMN sing 151 n n C5' O5' FMN sing 152 n n C5' "H5'1" FMN sing 153 n n C5' "H5'2" FMN sing 154 n n O5' P FMN sing 155 n n P O1P FMN doub 156 n n P O2P FMN sing 157 n n P O3P FMN sing 158 n n O2P HOP2 FMN sing 159 n n O3P HOP3 FMN sing 160 n n # _atom_sites.entry_id 4NXB _atom_sites.fract_transf_matrix[1][1] 0.029431 _atom_sites.fract_transf_matrix[1][2] -0.004979 _atom_sites.fract_transf_matrix[1][3] -0.005706 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026905 _atom_sites.fract_transf_matrix[2][3] -0.002037 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018973 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 1001 1001 FMN FMN . D 2 FMN B 1 1001 1001 FMN FMN . E 3 HOH A 1 1101 2 HOH HOH . E 3 HOH A 2 1102 3 HOH HOH . E 3 HOH A 3 1103 4 HOH HOH . E 3 HOH A 4 1104 6 HOH HOH . E 3 HOH A 5 1105 8 HOH HOH . E 3 HOH A 6 1106 10 HOH HOH . E 3 HOH A 7 1107 12 HOH HOH . E 3 HOH A 8 1108 13 HOH HOH . E 3 HOH A 9 1109 15 HOH HOH . E 3 HOH A 10 1110 17 HOH HOH . E 3 HOH A 11 1111 23 HOH HOH . E 3 HOH A 12 1112 24 HOH HOH . E 3 HOH A 13 1113 25 HOH HOH . E 3 HOH A 14 1114 27 HOH HOH . E 3 HOH A 15 1115 28 HOH HOH . E 3 HOH A 16 1116 29 HOH HOH . E 3 HOH A 17 1117 33 HOH HOH . F 3 HOH B 1 1101 1 HOH HOH . F 3 HOH B 2 1102 5 HOH HOH . F 3 HOH B 3 1103 7 HOH HOH . F 3 HOH B 4 1104 9 HOH HOH . F 3 HOH B 5 1105 11 HOH HOH . F 3 HOH B 6 1106 14 HOH HOH . F 3 HOH B 7 1107 16 HOH HOH . F 3 HOH B 8 1108 18 HOH HOH . F 3 HOH B 9 1109 19 HOH HOH . F 3 HOH B 10 1110 20 HOH HOH . F 3 HOH B 11 1111 21 HOH HOH . F 3 HOH B 12 1112 22 HOH HOH . F 3 HOH B 13 1113 26 HOH HOH . F 3 HOH B 14 1114 30 HOH HOH . F 3 HOH B 15 1115 31 HOH HOH . F 3 HOH B 16 1116 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 2 1.889 1.907 3.338 1 25.2 ? N1 FMN 1001 A 1 HETATM 2 C C2 FMN . . . C 2 2.783 0.924 3.712 1 25.03 ? C2 FMN 1001 A 1 HETATM 3 O O2 FMN . . . C 2 3.443 1.041 4.75 1 24.98 ? O2 FMN 1001 A 1 HETATM 4 N N3 FMN . . . C 2 2.941 -0.198 2.927 1 24.33 ? N3 FMN 1001 A 1 HETATM 5 C C4 FMN . . . C 2 2.205 -0.338 1.765 1 23.39 ? C4 FMN 1001 A 1 HETATM 6 O O4 FMN . . . C 2 2.353 -1.336 1.075 1 22.88 ? O4 FMN 1001 A 1 HETATM 7 C C4A FMN . . . C 2 1.299 0.652 1.378 1 23.41 ? C4A FMN 1001 A 1 HETATM 8 N N5 FMN . . . C 2 0.549 0.537 0.217 1 22.32 ? N5 FMN 1001 A 1 HETATM 9 C C5A FMN . . . C 2 -0.345 1.514 -0.166 1 22.22 ? C5A FMN 1001 A 1 HETATM 10 C C6 FMN . . . C 2 -1.101 1.4 -1.334 1 21.54 ? C6 FMN 1001 A 1 HETATM 11 C C7 FMN . . . C 2 -2.001 2.4 -1.701 1 21.32 ? C7 FMN 1001 A 1 HETATM 12 C C7M FMN . . . C 2 -2.817 2.288 -2.96 1 20.45 ? C7M FMN 1001 A 1 HETATM 13 C C8 FMN . . . C 2 -2.138 3.516 -0.893 1 21.97 ? C8 FMN 1001 A 1 HETATM 14 C C8M FMN . . . C 2 -3.099 4.597 -1.277 1 22.6 ? C8M FMN 1001 A 1 HETATM 15 C C9 FMN . . . C 2 -1.39 3.64 0.27 1 22.24 ? C9 FMN 1001 A 1 HETATM 16 C C9A FMN . . . C 2 -0.491 2.636 0.637 1 22.7 ? C9A FMN 1001 A 1 HETATM 17 N N10 FMN . . . C 2 0.245 2.76 1.804 1 23.64 ? N10 FMN 1001 A 1 HETATM 18 C C10 FMN . . . C 2 1.146 1.782 2.177 1 24.19 ? C10 FMN 1001 A 1 HETATM 19 C C1' FMN . . . C 2 0.087 3.974 2.65 1 24.31 ? C1' FMN 1001 A 1 HETATM 20 C C2' FMN . . . C 2 -0.939 3.816 3.759 1 24.49 ? C2' FMN 1001 A 1 HETATM 21 O O2' FMN . . . C 2 -2.115 3.192 3.289 1 24.31 ? O2' FMN 1001 A 1 HETATM 22 C C3' FMN . . . C 2 -1.267 5.213 4.268 1 24.66 ? C3' FMN 1001 A 1 HETATM 23 O O3' FMN . . . C 2 -1.827 6 3.238 1 23.65 ? O3' FMN 1001 A 1 HETATM 24 C C4' FMN . . . C 2 -0.011 5.912 4.753 1 25.94 ? C4' FMN 1001 A 1 HETATM 25 O O4' FMN . . . C 2 0.537 5.193 5.834 1 25.19 ? O4' FMN 1001 A 1 HETATM 26 C C5' FMN . . . C 2 -0.387 7.316 5.193 1 27.83 ? C5' FMN 1001 A 1 HETATM 27 O O5' FMN . . . C 2 -1.445 7.175 6.115 1 29.06 ? O5' FMN 1001 A 1 HETATM 28 P P FMN . . . C 2 -1.312 7.71 7.623 1 40.86 ? P FMN 1001 A 1 HETATM 29 O O1P FMN . . . C 2 -2.596 8.394 8.015 1 41.14 ? O1P FMN 1001 A 1 HETATM 30 O O2P FMN . . . C 2 -1.008 6.538 8.527 1 40.48 1 O2P FMN 1001 A 1 HETATM 31 O O3P FMN . . . C 2 -0.182 8.703 7.685 1 42 ? O3P FMN 1001 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #