data_4NXE
#
_model_server_result.job_id            3KcutnzFNNz2cPN7OH3pWw 
_model_server_result.datetime_utc      '2024-11-24 19:16:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nxe 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1001}' 
#
_entry.id    4NXE 
#
_exptl.entry_id    4NXE 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.67 
_cell.angle_gamma         90 
_cell.entry_id            4NXE 
_cell.length_a            37.474 
_cell.length_b            65.43 
_cell.length_c            49.565 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NXE 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PHE 99 A PHE 485 1_555 A N 2LT 100 A 2LT 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 A C 2LT 100 A 2LT 486 1_555 A N GLY 101 A GLY 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 B C PHE 99 B PHE 485 1_555 B N 2LT 100 B 2LT 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 B C 2LT 100 B 2LT 486 1_555 B N GLY 101 B GLY 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 107 n n 
N1 C10 FMN doub 108 n n 
C2 O2 FMN doub 109 n n 
C2 N3 FMN sing 110 n n 
N3 C4 FMN sing 111 n n 
N3 HN3 FMN sing 112 n n 
C4 O4 FMN doub 113 n n 
C4 C4A FMN sing 114 n n 
C4A N5 FMN doub 115 n n 
C4A C10 FMN sing 116 n n 
N5 C5A FMN sing 117 n n 
C5A C6 FMN doub 118 n y 
C5A C9A FMN sing 119 n y 
C6 C7 FMN sing 120 n y 
C6 H6 FMN sing 121 n n 
C7 C7M FMN sing 122 n n 
C7 C8 FMN doub 123 n y 
C7M HM71 FMN sing 124 n n 
C7M HM72 FMN sing 125 n n 
C7M HM73 FMN sing 126 n n 
C8 C8M FMN sing 127 n n 
C8 C9 FMN sing 128 n y 
C8M HM81 FMN sing 129 n n 
C8M HM82 FMN sing 130 n n 
C8M HM83 FMN sing 131 n n 
C9 C9A FMN doub 132 n y 
C9 H9 FMN sing 133 n n 
C9A N10 FMN sing 134 n n 
N10 C10 FMN sing 135 n n 
N10 C1' FMN sing 136 n n 
C1' C2' FMN sing 137 n n 
C1' "H1'1" FMN sing 138 n n 
C1' "H1'2" FMN sing 139 n n 
C2' O2' FMN sing 140 n n 
C2' C3' FMN sing 141 n n 
C2' H2' FMN sing 142 n n 
O2' HO2' FMN sing 143 n n 
C3' O3' FMN sing 144 n n 
C3' C4' FMN sing 145 n n 
C3' H3' FMN sing 146 n n 
O3' HO3' FMN sing 147 n n 
C4' O4' FMN sing 148 n n 
C4' C5' FMN sing 149 n n 
C4' H4' FMN sing 150 n n 
O4' HO4' FMN sing 151 n n 
C5' O5' FMN sing 152 n n 
C5' "H5'1" FMN sing 153 n n 
C5' "H5'2" FMN sing 154 n n 
O5' P FMN sing 155 n n 
P O1P FMN doub 156 n n 
P O2P FMN sing 157 n n 
P O3P FMN sing 158 n n 
O2P HOP2 FMN sing 159 n n 
O3P HOP3 FMN sing 160 n n 
#
_atom_sites.entry_id                     4NXE 
_atom_sites.fract_transf_matrix[1][1]    0.026685 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006002 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015284 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020679 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FMN A 1 1001 1001 FMN FMN . 
D 2 FMN B 1 1001 1001 FMN FMN . 
E 3 HOH A 1 1101 1 HOH HOH . 
E 3 HOH A 2 1102 4 HOH HOH . 
E 3 HOH A 3 1103 5 HOH HOH . 
E 3 HOH A 4 1104 6 HOH HOH . 
E 3 HOH A 5 1105 7 HOH HOH . 
E 3 HOH A 6 1106 9 HOH HOH . 
E 3 HOH A 7 1107 10 HOH HOH . 
E 3 HOH A 8 1108 13 HOH HOH . 
E 3 HOH A 9 1109 15 HOH HOH . 
E 3 HOH A 10 1110 17 HOH HOH . 
E 3 HOH A 11 1111 18 HOH HOH . 
E 3 HOH A 12 1112 19 HOH HOH . 
E 3 HOH A 13 1113 20 HOH HOH . 
E 3 HOH A 14 1114 23 HOH HOH . 
E 3 HOH A 15 1115 24 HOH HOH . 
E 3 HOH A 16 1116 29 HOH HOH . 
E 3 HOH A 17 1117 30 HOH HOH . 
E 3 HOH A 18 1118 32 HOH HOH . 
E 3 HOH A 19 1119 33 HOH HOH . 
E 3 HOH A 20 1120 38 HOH HOH . 
E 3 HOH A 21 1121 40 HOH HOH . 
E 3 HOH A 22 1122 41 HOH HOH . 
E 3 HOH A 23 1123 44 HOH HOH . 
E 3 HOH A 24 1124 45 HOH HOH . 
F 3 HOH B 1 1101 2 HOH HOH . 
F 3 HOH B 2 1102 3 HOH HOH . 
F 3 HOH B 3 1103 8 HOH HOH . 
F 3 HOH B 4 1104 11 HOH HOH . 
F 3 HOH B 5 1105 12 HOH HOH . 
F 3 HOH B 6 1106 14 HOH HOH . 
F 3 HOH B 7 1107 16 HOH HOH . 
F 3 HOH B 8 1108 21 HOH HOH . 
F 3 HOH B 9 1109 22 HOH HOH . 
F 3 HOH B 10 1110 25 HOH HOH . 
F 3 HOH B 11 1111 26 HOH HOH . 
F 3 HOH B 12 1112 27 HOH HOH . 
F 3 HOH B 13 1113 28 HOH HOH . 
F 3 HOH B 14 1114 31 HOH HOH . 
F 3 HOH B 15 1115 34 HOH HOH . 
F 3 HOH B 16 1116 35 HOH HOH . 
F 3 HOH B 17 1117 36 HOH HOH . 
F 3 HOH B 18 1118 37 HOH HOH . 
F 3 HOH B 19 1119 39 HOH HOH . 
F 3 HOH B 20 1120 42 HOH HOH . 
F 3 HOH B 21 1121 43 HOH HOH . 
F 3 HOH B 22 1122 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . C 2 -11.988 -0.861 46.019 1 24.74 ? N1 FMN 1001 A 1 
HETATM 2 C C2 FMN . . . C 2 -11.161 -1.9 45.637 1 21.81 ? C2 FMN 1001 A 1 
HETATM 3 O O2 FMN . . . C 2 -11.388 -2.504 44.593 1 17.36 ? O2 FMN 1001 A 1 
HETATM 4 N N3 FMN . . . C 2 -10.082 -2.268 46.417 1 15.4 ? N3 FMN 1001 A 1 
HETATM 5 C C4 FMN . . . C 2 -9.826 -1.592 47.589 1 25.72 ? C4 FMN 1001 A 1 
HETATM 6 O O4 FMN . . . C 2 -8.868 -1.912 48.293 1 19.9 ? O4 FMN 1001 A 1 
HETATM 7 C C4A FMN . . . C 2 -10.653 -0.547 47.977 1 20.19 ? C4A FMN 1001 A 1 
HETATM 8 N N5 FMN . . . C 2 -10.39 0.123 49.151 1 18.46 ? N5 FMN 1001 A 1 
HETATM 9 C C5A FMN . . . C 2 -11.204 1.161 49.547 1 19.23 ? C5A FMN 1001 A 1 
HETATM 10 C C6 FMN . . . C 2 -10.933 1.835 50.732 1 18 ? C6 FMN 1001 A 1 
HETATM 11 C C7 FMN . . . C 2 -11.75 2.884 51.139 1 13.75 ? C7 FMN 1001 A 1 
HETATM 12 C C7M FMN . . . C 2 -11.455 3.605 52.422 1 12.75 ? C7M FMN 1001 A 1 
HETATM 13 C C8 FMN . . . C 2 -12.838 3.257 50.357 1 16.8 ? C8 FMN 1001 A 1 
HETATM 14 C C8M FMN . . . C 2 -13.728 4.387 50.785 1 22.7 ? C8M FMN 1001 A 1 
HETATM 15 C C9 FMN . . . C 2 -13.106 2.582 49.173 1 17.74 ? C9 FMN 1001 A 1 
HETATM 16 C C9A FMN . . . C 2 -12.29 1.533 48.765 1 14.05 ? C9A FMN 1001 A 1 
HETATM 17 N N10 FMN . . . C 2 -12.554 0.871 47.582 1 15.46 ? N10 FMN 1001 A 1 
HETATM 18 C C10 FMN . . . C 2 -11.74 -0.179 47.191 1 22.18 ? C10 FMN 1001 A 1 
HETATM 19 C C1' FMN . . . C 2 -13.745 1.273 46.758 1 19.21 ? C1' FMN 1001 A 1 
HETATM 20 C C2' FMN . . . C 2 -13.431 2.255 45.635 1 18.22 ? C2' FMN 1001 A 1 
HETATM 21 O O2' FMN . . . C 2 -12.672 3.337 46.124 1 21.82 ? O2' FMN 1001 A 1 
HETATM 22 C C3' FMN . . . C 2 -14.738 2.779 45.052 1 20.94 ? C3' FMN 1001 A 1 
HETATM 23 O O3' FMN . . . C 2 -15.459 3.475 46.046 1 21.26 ? O3' FMN 1001 A 1 
HETATM 24 C C4' FMN . . . C 2 -15.585 1.631 44.511 1 24.28 ? C4' FMN 1001 A 1 
HETATM 25 O O4' FMN . . . C 2 -14.942 1.075 43.385 1 22.04 ? O4' FMN 1001 A 1 
HETATM 26 C C5' FMN . . . C 2 -16.966 2.131 44.109 1 31.12 ? C5' FMN 1001 A 1 
HETATM 27 O O5' FMN . . . C 2 -16.791 3.42 43.574 1 32.27 ? O5' FMN 1001 A 1 
HETATM 28 P P FMN . . . C 2 -16.922 3.655 41.99 1 42.64 ? P FMN 1001 A 1 
HETATM 29 O O1P FMN . . . C 2 -16.979 5.141 41.73 1 43.95 ? O1P FMN 1001 A 1 
HETATM 30 O O2P FMN . . . C 2 -15.712 3.051 41.318 1 48.37 1 O2P FMN 1001 A 1 
HETATM 31 O O3P FMN . . . C 2 -18.178 3.006 41.462 1 45.57 ? O3P FMN 1001 A 1 
#
_model_server_stats.io_time_ms              55 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           796 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           31 
#