data_4NXG
#
_model_server_result.job_id            kbC4ARgS1chfY4ULaaQjgA 
_model_server_result.datetime_utc      '2025-01-11 15:41:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nxg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    4NXG 
#
_exptl.entry_id    4NXG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.42 
_cell.angle_gamma         90 
_cell.entry_id            4NXG 
_cell.length_a            37.397 
_cell.length_b            60.711 
_cell.length_c            49.279 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NXG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PHE 99 A PHE 485 1_555 A N 2LT 100 A 2LT 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C 2LT 100 A 2LT 486 1_555 A N GLY 101 A GLY 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale3 B C PHE 99 B PHE 485 1_555 B N 2LT 100 B 2LT 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 B C 2LT 100 B 2LT 486 1_555 B N GLY 101 B GLY 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 107 n n 
N1 C10 FMN doub 108 n n 
C2 O2 FMN doub 109 n n 
C2 N3 FMN sing 110 n n 
N3 C4 FMN sing 111 n n 
N3 HN3 FMN sing 112 n n 
C4 O4 FMN doub 113 n n 
C4 C4A FMN sing 114 n n 
C4A N5 FMN doub 115 n n 
C4A C10 FMN sing 116 n n 
N5 C5A FMN sing 117 n n 
C5A C6 FMN doub 118 n y 
C5A C9A FMN sing 119 n y 
C6 C7 FMN sing 120 n y 
C6 H6 FMN sing 121 n n 
C7 C7M FMN sing 122 n n 
C7 C8 FMN doub 123 n y 
C7M HM71 FMN sing 124 n n 
C7M HM72 FMN sing 125 n n 
C7M HM73 FMN sing 126 n n 
C8 C8M FMN sing 127 n n 
C8 C9 FMN sing 128 n y 
C8M HM81 FMN sing 129 n n 
C8M HM82 FMN sing 130 n n 
C8M HM83 FMN sing 131 n n 
C9 C9A FMN doub 132 n y 
C9 H9 FMN sing 133 n n 
C9A N10 FMN sing 134 n n 
N10 C10 FMN sing 135 n n 
N10 C1' FMN sing 136 n n 
C1' C2' FMN sing 137 n n 
C1' "H1'1" FMN sing 138 n n 
C1' "H1'2" FMN sing 139 n n 
C2' O2' FMN sing 140 n n 
C2' C3' FMN sing 141 n n 
C2' H2' FMN sing 142 n n 
O2' HO2' FMN sing 143 n n 
C3' O3' FMN sing 144 n n 
C3' C4' FMN sing 145 n n 
C3' H3' FMN sing 146 n n 
O3' HO3' FMN sing 147 n n 
C4' O4' FMN sing 148 n n 
C4' C5' FMN sing 149 n n 
C4' H4' FMN sing 150 n n 
O4' HO4' FMN sing 151 n n 
C5' O5' FMN sing 152 n n 
C5' "H5'1" FMN sing 153 n n 
C5' "H5'2" FMN sing 154 n n 
O5' P FMN sing 155 n n 
P O1P FMN doub 156 n n 
P O2P FMN sing 157 n n 
P O3P FMN sing 158 n n 
O2P HOP2 FMN sing 159 n n 
O3P HOP3 FMN sing 160 n n 
#
_atom_sites.entry_id                     4NXG 
_atom_sites.fract_transf_matrix[1][1]    0.02674 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006382 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016471 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020863 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FMN A 1 601 1 FMN FMN . 
D 2 FMN B 1 601 1 FMN FMN . 
E 3 HOH A 1 701 1 HOH HOH . 
E 3 HOH A 2 702 2 HOH HOH . 
E 3 HOH A 3 703 4 HOH HOH . 
E 3 HOH A 4 704 7 HOH HOH . 
E 3 HOH A 5 705 8 HOH HOH . 
E 3 HOH A 6 706 9 HOH HOH . 
E 3 HOH A 7 707 10 HOH HOH . 
E 3 HOH A 8 708 11 HOH HOH . 
E 3 HOH A 9 709 12 HOH HOH . 
E 3 HOH A 10 710 13 HOH HOH . 
E 3 HOH A 11 711 14 HOH HOH . 
E 3 HOH A 12 712 15 HOH HOH . 
E 3 HOH A 13 713 16 HOH HOH . 
E 3 HOH A 14 714 17 HOH HOH . 
E 3 HOH A 15 715 18 HOH HOH . 
E 3 HOH A 16 716 21 HOH HOH . 
E 3 HOH A 17 717 22 HOH HOH . 
E 3 HOH A 18 718 28 HOH HOH . 
E 3 HOH A 19 719 31 HOH HOH . 
E 3 HOH A 20 720 32 HOH HOH . 
E 3 HOH A 21 721 34 HOH HOH . 
E 3 HOH A 22 722 35 HOH HOH . 
E 3 HOH A 23 723 37 HOH HOH . 
E 3 HOH A 24 724 38 HOH HOH . 
E 3 HOH A 25 725 39 HOH HOH . 
E 3 HOH A 26 726 40 HOH HOH . 
E 3 HOH A 27 727 44 HOH HOH . 
E 3 HOH A 28 728 47 HOH HOH . 
E 3 HOH A 29 729 48 HOH HOH . 
E 3 HOH A 30 730 49 HOH HOH . 
E 3 HOH A 31 731 51 HOH HOH . 
E 3 HOH A 32 732 53 HOH HOH . 
E 3 HOH A 33 733 54 HOH HOH . 
F 3 HOH B 1 701 3 HOH HOH . 
F 3 HOH B 2 702 5 HOH HOH . 
F 3 HOH B 3 703 6 HOH HOH . 
F 3 HOH B 4 704 19 HOH HOH . 
F 3 HOH B 5 705 20 HOH HOH . 
F 3 HOH B 6 706 23 HOH HOH . 
F 3 HOH B 7 707 24 HOH HOH . 
F 3 HOH B 8 708 25 HOH HOH . 
F 3 HOH B 9 709 26 HOH HOH . 
F 3 HOH B 10 710 27 HOH HOH . 
F 3 HOH B 11 711 29 HOH HOH . 
F 3 HOH B 12 712 30 HOH HOH . 
F 3 HOH B 13 713 33 HOH HOH . 
F 3 HOH B 14 714 36 HOH HOH . 
F 3 HOH B 15 715 41 HOH HOH . 
F 3 HOH B 16 716 42 HOH HOH . 
F 3 HOH B 17 717 43 HOH HOH . 
F 3 HOH B 18 718 45 HOH HOH . 
F 3 HOH B 19 719 46 HOH HOH . 
F 3 HOH B 20 720 50 HOH HOH . 
F 3 HOH B 21 721 52 HOH HOH . 
F 3 HOH B 22 722 55 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . C 2 -12.595 -1.605 45.352 1 15.49 ? N1 FMN 601 A 1 
HETATM 2 C C2 FMN . . . C 2 -11.799 -2.455 44.605 1 19.33 ? C2 FMN 601 A 1 
HETATM 3 O O2 FMN . . . C 2 -12.046 -2.652 43.417 1 22.52 ? O2 FMN 601 A 1 
HETATM 4 N N3 FMN . . . C 2 -10.725 -3.092 45.183 1 17 ? N3 FMN 601 A 1 
HETATM 5 C C4 FMN . . . C 2 -10.448 -2.871 46.513 1 18.51 ? C4 FMN 601 A 1 
HETATM 6 O O4 FMN . . . C 2 -9.485 -3.438 47.027 1 19.06 ? O4 FMN 601 A 1 
HETATM 7 C C4A FMN . . . C 2 -11.246 -2.014 47.268 1 17.61 ? C4A FMN 601 A 1 
HETATM 8 N N5 FMN . . . C 2 -10.967 -1.791 48.602 1 17.35 ? N5 FMN 601 A 1 
HETATM 9 C C5A FMN . . . C 2 -11.757 -0.946 49.356 1 17.27 ? C5A FMN 601 A 1 
HETATM 10 C C6 FMN . . . C 2 -11.458 -0.74 50.703 1 15.92 ? C6 FMN 601 A 1 
HETATM 11 C C7 FMN . . . C 2 -12.249 0.106 51.469 1 14.53 ? C7 FMN 601 A 1 
HETATM 12 C C7M FMN . . . C 2 -11.926 0.321 52.92 1 10.29 ? C7M FMN 601 A 1 
HETATM 13 C C8 FMN . . . C 2 -13.338 0.747 50.883 1 14.42 ? C8 FMN 601 A 1 
HETATM 14 C C8M FMN . . . C 2 -14.194 1.663 51.705 1 17.58 ? C8M FMN 601 A 1 
HETATM 15 C C9 FMN . . . C 2 -13.645 0.54 49.539 1 12.65 ? C9 FMN 601 A 1 
HETATM 16 C C9A FMN . . . C 2 -12.851 -0.311 48.769 1 15.62 ? C9A FMN 601 A 1 
HETATM 17 N N10 FMN . . . C 2 -13.126 -0.518 47.425 1 17.52 ? N10 FMN 601 A 1 
HETATM 18 C C10 FMN . . . C 2 -12.329 -1.376 46.684 1 16.96 ? C10 FMN 601 A 1 
HETATM 19 C C1' FMN . . . C 2 -14.313 0.137 46.769 1 15.18 ? C1' FMN 601 A 1 
HETATM 20 C C2' FMN . . . C 2 -14.051 1.474 46.084 1 15.82 ? C2' FMN 601 A 1 
HETATM 21 O O2' FMN . . . C 2 -13.291 2.312 46.925 1 14.23 ? O2' FMN 601 A 1 
HETATM 22 C C3' FMN . . . C 2 -15.388 2.151 45.777 1 19.5 ? C3' FMN 601 A 1 
HETATM 23 O O3' FMN . . . C 2 -16.123 2.306 46.972 1 19.49 ? O3' FMN 601 A 1 
HETATM 24 C C4' FMN . . . C 2 -16.241 1.344 44.797 1 23.58 ? C4' FMN 601 A 1 
HETATM 25 O O4' FMN . . . C 2 -15.65 1.368 43.515 1 26.41 ? O4' FMN 601 A 1 
HETATM 26 C C5' FMN . . . C 2 -17.658 1.908 44.687 1 24.2 ? C5' FMN 601 A 1 
HETATM 27 O O5' FMN . . . C 2 -17.574 3.313 44.68 1 23.35 ? O5' FMN 601 A 1 
HETATM 28 P P FMN . . . C 2 -17.731 4.14 43.31 1 45.83 ? P FMN 601 A 1 
HETATM 29 O O1P FMN . . . C 2 -16.491 3.912 42.482 1 46.79 ? O1P FMN 601 A 1 
HETATM 30 O O2P FMN . . . C 2 -18.951 3.672 42.557 1 44.87 ? O2P FMN 601 A 1 
HETATM 31 O O3P FMN . . . C 2 -17.886 5.604 43.641 1 43.46 ? O3P FMN 601 A 1 
#
_model_server_stats.io_time_ms              84 
_model_server_stats.parse_time_ms           51 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           951 
_model_server_stats.encode_time_ms          25 
_model_server_stats.element_count           31 
#