data_4NXH
#
_model_server_result.job_id            eXe9zsUl6OtHHs1eAG2_7A 
_model_server_result.datetime_utc      '2025-07-30 16:16:14' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nxh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":2701}' 
#
_entry.id    4NXH 
#
_exptl.entry_id    4NXH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NXH 
_cell.length_a            29.56 
_cell.length_b            29.56 
_cell.length_c            76.73 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NXH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A O3' C 3 A C 2649 1_555 A P 6FU 4 A 6FU 2650 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.598 ? 
covale ? covale2 A O3' C 3 A C 2649 1_555 A P 6FU 4 A 6FU 2650 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.599 ? 
covale ? covale3 A O3' 6FU 4 A 6FU 2650 1_555 A P C 5 A C 2651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? 
hydrog TYPE_28_PAIR hydrog1 A N1 G 2 A G 2648 1_555 A O2 U 26 A U 2672 1_555 ? A ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_28_PAIR hydrog2 A O6 G 2 A G 2648 1_555 A N3 U 26 A U 2672 1_555 ? A ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 A N3 C 3 A C 2649 1_555 A N1 G 25 A G 2671 1_555 ? A ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 A N4 C 3 A C 2649 1_555 A O6 G 25 A G 2671 1_555 ? A ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 A O2 C 3 A C 2649 1_555 A N2 G 25 A G 2671 1_555 ? A ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 A N3 C 5 A C 2651 1_555 A N1 G 23 A G 2669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 A N4 C 5 A C 2651 1_555 A O6 G 23 A G 2669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 A O2 C 5 A C 2651 1_555 A N2 G 23 A G 2669 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 A N3 C 6 A C 2652 1_555 A N1 G 22 A G 2668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 A N4 C 6 A C 2652 1_555 A O6 G 22 A G 2668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 A O2 C 6 A C 2652 1_555 A N2 G 22 A G 2668 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'U-C MISPAIR' hydrog12 A O2 U 7 A U 2653 1_555 A N4 C 21 A C 2667 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'G-U MISPAIR' hydrog13 A N2 G 9 A G 2655 1_555 A O4 U 10 A U 2656 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'REVERSED HOOGSTEEN' hydrog14 A N3 U 10 A U 2656 1_555 A N7 A 19 A A 2665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'REVERSED HOOGSTEEN' hydrog15 A O2 U 10 A U 2656 1_555 A N6 A 19 A A 2665 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_11_PAIR hydrog16 A N6 A 11 A A 2657 1_555 A N3 G 18 A G 2664 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_11_PAIR hydrog17 A N7 A 11 A A 2657 1_555 A N2 G 18 A G 2664 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog18 A N3 C 12 A C 2658 1_555 A N1 G 17 A G 2663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog19 A N4 C 12 A C 2658 1_555 A O6 G 17 A G 2663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog20 A O2 C 12 A C 2658 1_555 A N2 G 17 A G 2663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog 'G-A MISPAIR' hydrog21 A N2 G 13 A G 2659 1_555 A N7 A 16 A A 2662 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 156 n n 
C1 C2 GOL sing 157 n n 
C1 H11 GOL sing 158 n n 
C1 H12 GOL sing 159 n n 
O1 HO1 GOL sing 160 n n 
C2 O2 GOL sing 161 n n 
C2 C3 GOL sing 162 n n 
C2 H2 GOL sing 163 n n 
O2 HO2 GOL sing 164 n n 
C3 O3 GOL sing 165 n n 
C3 H31 GOL sing 166 n n 
C3 H32 GOL sing 167 n n 
O3 HO3 GOL sing 168 n n 
#
_atom_sites.entry_id                     4NXH 
_atom_sites.fract_transf_matrix[1][1]    0.033829 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.033829 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013033 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GOL A 1 2701 1 GOL GOL . 
C 3 SO4 A 1 2702 1 SO4 SO4 . 
D 4 HOH A 1 2801 1 HOH HOH . 
D 4 HOH A 2 2802 2 HOH HOH . 
D 4 HOH A 3 2803 3 HOH HOH . 
D 4 HOH A 4 2804 4 HOH HOH . 
D 4 HOH A 5 2805 5 HOH HOH . 
D 4 HOH A 6 2806 6 HOH HOH . 
D 4 HOH A 7 2807 7 HOH HOH . 
D 4 HOH A 8 2808 8 HOH HOH . 
D 4 HOH A 9 2809 9 HOH HOH . 
D 4 HOH A 10 2810 10 HOH HOH . 
D 4 HOH A 11 2811 11 HOH HOH . 
D 4 HOH A 12 2812 12 HOH HOH . 
D 4 HOH A 13 2813 13 HOH HOH . 
D 4 HOH A 14 2814 14 HOH HOH . 
D 4 HOH A 15 2815 15 HOH HOH . 
D 4 HOH A 16 2816 16 HOH HOH . 
D 4 HOH A 17 2817 17 HOH HOH . 
D 4 HOH A 18 2818 18 HOH HOH . 
D 4 HOH A 19 2819 19 HOH HOH . 
D 4 HOH A 20 2820 20 HOH HOH . 
D 4 HOH A 21 2821 21 HOH HOH . 
D 4 HOH A 22 2822 22 HOH HOH . 
D 4 HOH A 23 2823 23 HOH HOH . 
D 4 HOH A 24 2824 24 HOH HOH . 
D 4 HOH A 25 2825 25 HOH HOH . 
D 4 HOH A 26 2826 26 HOH HOH . 
D 4 HOH A 27 2827 27 HOH HOH . 
D 4 HOH A 28 2828 28 HOH HOH . 
D 4 HOH A 29 2829 29 HOH HOH . 
D 4 HOH A 30 2830 30 HOH HOH . 
D 4 HOH A 31 2831 31 HOH HOH . 
D 4 HOH A 32 2832 32 HOH HOH . 
D 4 HOH A 33 2833 33 HOH HOH . 
D 4 HOH A 34 2834 34 HOH HOH . 
D 4 HOH A 35 2835 35 HOH HOH . 
D 4 HOH A 36 2836 36 HOH HOH . 
D 4 HOH A 37 2837 37 HOH HOH . 
D 4 HOH A 38 2838 38 HOH HOH . 
D 4 HOH A 39 2839 39 HOH HOH . 
D 4 HOH A 40 2840 40 HOH HOH . 
D 4 HOH A 41 2841 41 HOH HOH . 
D 4 HOH A 42 2842 42 HOH HOH . 
D 4 HOH A 43 2843 43 HOH HOH . 
D 4 HOH A 44 2844 44 HOH HOH . 
D 4 HOH A 45 2845 45 HOH HOH . 
D 4 HOH A 46 2846 46 HOH HOH . 
D 4 HOH A 47 2847 47 HOH HOH . 
D 4 HOH A 48 2848 48 HOH HOH . 
D 4 HOH A 49 2849 49 HOH HOH . 
D 4 HOH A 50 2850 50 HOH HOH . 
D 4 HOH A 51 2851 51 HOH HOH . 
D 4 HOH A 52 2852 52 HOH HOH . 
D 4 HOH A 53 2853 53 HOH HOH . 
D 4 HOH A 54 2854 54 HOH HOH . 
D 4 HOH A 55 2855 55 HOH HOH . 
D 4 HOH A 56 2856 56 HOH HOH . 
D 4 HOH A 57 2857 57 HOH HOH . 
D 4 HOH A 58 2858 58 HOH HOH . 
D 4 HOH A 59 2859 59 HOH HOH . 
D 4 HOH A 60 2860 60 HOH HOH . 
D 4 HOH A 61 2861 61 HOH HOH . 
D 4 HOH A 62 2862 62 HOH HOH . 
D 4 HOH A 63 2863 63 HOH HOH . 
D 4 HOH A 64 2864 64 HOH HOH . 
D 4 HOH A 65 2865 65 HOH HOH . 
D 4 HOH A 66 2866 66 HOH HOH . 
D 4 HOH A 67 2867 67 HOH HOH . 
D 4 HOH A 68 2868 68 HOH HOH . 
D 4 HOH A 69 2869 69 HOH HOH . 
D 4 HOH A 70 2870 70 HOH HOH . 
D 4 HOH A 71 2871 71 HOH HOH . 
D 4 HOH A 72 2872 72 HOH HOH . 
D 4 HOH A 73 2873 74 HOH HOH . 
D 4 HOH A 74 2874 75 HOH HOH . 
D 4 HOH A 75 2875 76 HOH HOH . 
D 4 HOH A 76 2876 77 HOH HOH . 
D 4 HOH A 77 2877 78 HOH HOH . 
D 4 HOH A 78 2878 79 HOH HOH . 
D 4 HOH A 79 2879 80 HOH HOH . 
D 4 HOH A 80 2880 81 HOH HOH . 
D 4 HOH A 81 2881 82 HOH HOH . 
D 4 HOH A 82 2882 83 HOH HOH . 
D 4 HOH A 83 2883 84 HOH HOH . 
D 4 HOH A 84 2884 85 HOH HOH . 
D 4 HOH A 85 2885 86 HOH HOH . 
D 4 HOH A 86 2886 87 HOH HOH . 
D 4 HOH A 87 2887 88 HOH HOH . 
D 4 HOH A 88 2888 89 HOH HOH . 
D 4 HOH A 89 2889 90 HOH HOH . 
D 4 HOH A 90 2890 91 HOH HOH . 
D 4 HOH A 91 2891 92 HOH HOH . 
D 4 HOH A 92 2892 93 HOH HOH . 
D 4 HOH A 93 2893 94 HOH HOH . 
D 4 HOH A 94 2894 95 HOH HOH . 
D 4 HOH A 95 2895 96 HOH HOH . 
D 4 HOH A 96 2896 97 HOH HOH . 
D 4 HOH A 97 2897 98 HOH HOH . 
D 4 HOH A 98 2898 99 HOH HOH . 
D 4 HOH A 99 2899 100 HOH HOH . 
D 4 HOH A 100 2900 101 HOH HOH . 
D 4 HOH A 101 2901 102 HOH HOH . 
D 4 HOH A 102 2902 103 HOH HOH . 
D 4 HOH A 103 2903 104 HOH HOH . 
D 4 HOH A 104 2904 105 HOH HOH . 
D 4 HOH A 105 2905 106 HOH HOH . 
D 4 HOH A 106 2906 107 HOH HOH . 
D 4 HOH A 107 2907 108 HOH HOH . 
D 4 HOH A 108 2908 109 HOH HOH . 
D 4 HOH A 109 2909 110 HOH HOH . 
D 4 HOH A 110 2910 111 HOH HOH . 
D 4 HOH A 111 2911 112 HOH HOH . 
D 4 HOH A 112 2912 113 HOH HOH . 
D 4 HOH A 113 2913 114 HOH HOH . 
D 4 HOH A 114 2914 115 HOH HOH . 
D 4 HOH A 115 2915 116 HOH HOH . 
D 4 HOH A 116 2916 117 HOH HOH . 
D 4 HOH A 117 2917 118 HOH HOH . 
D 4 HOH A 118 2918 120 HOH HOH . 
D 4 HOH A 119 2919 124 HOH HOH . 
D 4 HOH A 120 2920 125 HOH HOH . 
D 4 HOH A 121 2921 126 HOH HOH . 
D 4 HOH A 122 2922 127 HOH HOH . 
D 4 HOH A 123 2923 128 HOH HOH . 
D 4 HOH A 124 2924 129 HOH HOH . 
D 4 HOH A 125 2925 130 HOH HOH . 
D 4 HOH A 126 2926 131 HOH HOH . 
D 4 HOH A 127 2927 132 HOH HOH . 
D 4 HOH A 128 2928 133 HOH HOH . 
D 4 HOH A 129 2929 134 HOH HOH . 
D 4 HOH A 130 2930 136 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . B 2 2.899 5.596 9.293 0.62 18.76 ? C1 GOL 2701 A 1 
HETATM 2 O O1 GOL . . . B 2 3.056 4.431 10.084 0.74 19.47 ? O1 GOL 2701 A 1 
HETATM 3 C C2 GOL . . . B 2 1.597 5.571 8.496 0.62 17.79 ? C2 GOL 2701 A 1 
HETATM 4 O O2 GOL . . . B 2 1.581 4.452 7.604 0.89 16.65 ? O2 GOL 2701 A 1 
HETATM 5 C C3 GOL . . . B 2 1.476 6.908 7.747 0.83 18.02 ? C3 GOL 2701 A 1 
HETATM 6 O O3 GOL . . . B 2 0.19 7.059 7.18 0.63 17.47 ? O3 GOL 2701 A 1 
#
_model_server_stats.io_time_ms              118 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           243 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#