data_4NXO # _model_server_result.job_id XG5Ev3kwrropYunTemj1Vw _model_server_result.datetime_utc '2024-12-23 11:04:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nxo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1107}' # _entry.id 4NXO # _exptl.entry_id 4NXO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4NXO _cell.length_a 262.909 _cell.length_b 262.909 _cell.length_c 86.337 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NXO _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,W 1 1 B,L,M,N,O,P,Q,R,S,T,U,V,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 I N N ? 6 J N N ? 6 R N N ? 6 S N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 79 A HIS 108 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc2 A NE2 HIS 83 A HIS 112 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc3 A OE1 GLU 160 A GLU 189 1_555 C ZN ZN . A ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc4 C ZN ZN . A ZN 1101 1_555 D O32 2H7 . A 2H7 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.932 ? metalc ? metalc5 C ZN ZN . A ZN 1101 1_555 D O33 2H7 . A 2H7 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc6 B NE2 HIS 79 B HIS 108 1_555 L ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc7 B NE2 HIS 83 B HIS 112 1_555 L ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc8 B OE1 GLU 160 B GLU 189 1_555 L ZN ZN . B ZN 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc9 L ZN ZN . B ZN 1101 1_555 M O32 2H7 . B 2H7 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc10 L ZN ZN . B ZN 1101 1_555 M O33 2H7 . B 2H7 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 192 n n C1 C2 EDO sing 193 n n C1 H11 EDO sing 194 n n C1 H12 EDO sing 195 n n O1 HO1 EDO sing 196 n n C2 O2 EDO sing 197 n n C2 H21 EDO sing 198 n n C2 H22 EDO sing 199 n n O2 HO2 EDO sing 200 n n # _atom_sites.entry_id 4NXO _atom_sites.fract_transf_matrix[1][1] 0.003804 _atom_sites.fract_transf_matrix[1][2] 0.002196 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004392 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1101 3003 ZN ZN . D 3 2H7 A 1 1102 3004 2H7 2H7 . E 4 1PE A 1 1103 3005 1PE 1PE . F 5 PEG A 1 1104 3006 PEG PEG . G 5 PEG A 1 1105 3007 PEG PEG . H 5 PEG A 1 1106 3008 PEG PEG . I 6 EDO A 1 1107 3009 EDO EDO . J 6 EDO A 1 1108 3010 EDO EDO . K 7 EPE A 1 1109 3011 EPE EPE . L 2 ZN B 1 1101 1103 ZN ZN . M 3 2H7 B 1 1102 1102 2H7 2H7 . N 4 1PE B 1 1103 1105 1PE 1PE . O 5 PEG B 1 1104 1106 PEG PEG . P 5 PEG B 1 1105 1107 PEG PEG . Q 5 PEG B 1 1106 1109 PEG PEG . R 6 EDO B 1 1107 1110 EDO EDO . S 6 EDO B 1 1108 1111 EDO EDO . T 5 PEG B 1 1109 1108 PEG PEG . U 7 EPE B 1 1110 1112 EPE EPE . V 8 DIO B 1 1111 1113 DIO DIO . W 9 HOH A 1 1201 1 HOH HOH . W 9 HOH A 2 1202 2 HOH HOH . W 9 HOH A 3 1203 3 HOH HOH . W 9 HOH A 4 1204 4 HOH HOH . W 9 HOH A 5 1205 5 HOH HOH . W 9 HOH A 6 1206 6 HOH HOH . W 9 HOH A 7 1207 7 HOH HOH . W 9 HOH A 8 1208 8 HOH HOH . W 9 HOH A 9 1209 9 HOH HOH . W 9 HOH A 10 1210 10 HOH HOH . W 9 HOH A 11 1211 11 HOH HOH . W 9 HOH A 12 1212 12 HOH HOH . W 9 HOH A 13 1213 13 HOH HOH . W 9 HOH A 14 1214 14 HOH HOH . W 9 HOH A 15 1215 15 HOH HOH . W 9 HOH A 16 1216 16 HOH HOH . W 9 HOH A 17 1217 17 HOH HOH . W 9 HOH A 18 1218 18 HOH HOH . W 9 HOH A 19 1219 19 HOH HOH . W 9 HOH A 20 1220 20 HOH HOH . W 9 HOH A 21 1221 21 HOH HOH . W 9 HOH A 22 1222 22 HOH HOH . W 9 HOH A 23 1223 23 HOH HOH . W 9 HOH A 24 1224 24 HOH HOH . W 9 HOH A 25 1225 62 HOH HOH . W 9 HOH A 26 1226 63 HOH HOH . W 9 HOH A 27 1227 66 HOH HOH . W 9 HOH A 28 1228 70 HOH HOH . W 9 HOH A 29 1229 71 HOH HOH . W 9 HOH A 30 1230 73 HOH HOH . W 9 HOH A 31 1231 76 HOH HOH . W 9 HOH A 32 1232 78 HOH HOH . W 9 HOH A 33 1233 79 HOH HOH . W 9 HOH A 34 1234 80 HOH HOH . W 9 HOH A 35 1235 91 HOH HOH . W 9 HOH A 36 1236 92 HOH HOH . W 9 HOH A 37 1237 93 HOH HOH . W 9 HOH A 38 1238 99 HOH HOH . W 9 HOH A 39 1239 103 HOH HOH . W 9 HOH A 40 1240 104 HOH HOH . W 9 HOH A 41 1241 105 HOH HOH . W 9 HOH A 42 1242 109 HOH HOH . W 9 HOH A 43 1243 112 HOH HOH . W 9 HOH A 44 1244 113 HOH HOH . W 9 HOH A 45 1245 114 HOH HOH . W 9 HOH A 46 1246 118 HOH HOH . W 9 HOH A 47 1247 122 HOH HOH . W 9 HOH A 48 1248 124 HOH HOH . W 9 HOH A 49 1249 125 HOH HOH . W 9 HOH A 50 1250 126 HOH HOH . W 9 HOH A 51 1251 128 HOH HOH . W 9 HOH A 52 1252 129 HOH HOH . W 9 HOH A 53 1253 131 HOH HOH . W 9 HOH A 54 1254 137 HOH HOH . W 9 HOH A 55 1255 142 HOH HOH . W 9 HOH A 56 1256 146 HOH HOH . W 9 HOH A 57 1257 148 HOH HOH . W 9 HOH A 58 1258 150 HOH HOH . W 9 HOH A 59 1259 151 HOH HOH . W 9 HOH A 60 1260 152 HOH HOH . W 9 HOH A 61 1261 153 HOH HOH . W 9 HOH A 62 1262 154 HOH HOH . X 9 HOH B 1 1201 25 HOH HOH . X 9 HOH B 2 1202 26 HOH HOH . X 9 HOH B 3 1203 27 HOH HOH . X 9 HOH B 4 1204 28 HOH HOH . X 9 HOH B 5 1205 29 HOH HOH . X 9 HOH B 6 1206 30 HOH HOH . X 9 HOH B 7 1207 31 HOH HOH . X 9 HOH B 8 1208 32 HOH HOH . X 9 HOH B 9 1209 33 HOH HOH . X 9 HOH B 10 1210 34 HOH HOH . X 9 HOH B 11 1211 35 HOH HOH . X 9 HOH B 12 1212 36 HOH HOH . X 9 HOH B 13 1213 37 HOH HOH . X 9 HOH B 14 1214 38 HOH HOH . X 9 HOH B 15 1215 39 HOH HOH . X 9 HOH B 16 1216 40 HOH HOH . X 9 HOH B 17 1217 41 HOH HOH . X 9 HOH B 18 1218 42 HOH HOH . X 9 HOH B 19 1219 43 HOH HOH . X 9 HOH B 20 1220 44 HOH HOH . X 9 HOH B 21 1221 45 HOH HOH . X 9 HOH B 22 1222 46 HOH HOH . X 9 HOH B 23 1223 47 HOH HOH . X 9 HOH B 24 1224 48 HOH HOH . X 9 HOH B 25 1225 49 HOH HOH . X 9 HOH B 26 1226 50 HOH HOH . X 9 HOH B 27 1227 51 HOH HOH . X 9 HOH B 28 1228 52 HOH HOH . X 9 HOH B 29 1229 53 HOH HOH . X 9 HOH B 30 1230 54 HOH HOH . X 9 HOH B 31 1231 55 HOH HOH . X 9 HOH B 32 1232 56 HOH HOH . X 9 HOH B 33 1233 57 HOH HOH . X 9 HOH B 34 1234 58 HOH HOH . X 9 HOH B 35 1235 59 HOH HOH . X 9 HOH B 36 1236 60 HOH HOH . X 9 HOH B 37 1237 61 HOH HOH . X 9 HOH B 38 1238 64 HOH HOH . X 9 HOH B 39 1239 65 HOH HOH . X 9 HOH B 40 1240 67 HOH HOH . X 9 HOH B 41 1241 68 HOH HOH . X 9 HOH B 42 1242 69 HOH HOH . X 9 HOH B 43 1243 72 HOH HOH . X 9 HOH B 44 1244 74 HOH HOH . X 9 HOH B 45 1245 75 HOH HOH . X 9 HOH B 46 1246 77 HOH HOH . X 9 HOH B 47 1247 81 HOH HOH . X 9 HOH B 48 1248 82 HOH HOH . X 9 HOH B 49 1249 83 HOH HOH . X 9 HOH B 50 1250 84 HOH HOH . X 9 HOH B 51 1251 85 HOH HOH . X 9 HOH B 52 1252 86 HOH HOH . X 9 HOH B 53 1253 87 HOH HOH . X 9 HOH B 54 1254 88 HOH HOH . X 9 HOH B 55 1255 89 HOH HOH . X 9 HOH B 56 1256 90 HOH HOH . X 9 HOH B 57 1257 94 HOH HOH . X 9 HOH B 58 1258 95 HOH HOH . X 9 HOH B 59 1259 96 HOH HOH . X 9 HOH B 60 1260 97 HOH HOH . X 9 HOH B 61 1261 98 HOH HOH . X 9 HOH B 62 1262 100 HOH HOH . X 9 HOH B 63 1263 101 HOH HOH . X 9 HOH B 64 1264 102 HOH HOH . X 9 HOH B 65 1265 106 HOH HOH . X 9 HOH B 66 1266 107 HOH HOH . X 9 HOH B 67 1267 108 HOH HOH . X 9 HOH B 68 1268 110 HOH HOH . X 9 HOH B 69 1269 111 HOH HOH . X 9 HOH B 70 1270 115 HOH HOH . X 9 HOH B 71 1271 116 HOH HOH . X 9 HOH B 72 1272 117 HOH HOH . X 9 HOH B 73 1273 119 HOH HOH . X 9 HOH B 74 1274 120 HOH HOH . X 9 HOH B 75 1275 121 HOH HOH . X 9 HOH B 76 1276 123 HOH HOH . X 9 HOH B 77 1277 132 HOH HOH . X 9 HOH B 78 1278 133 HOH HOH . X 9 HOH B 79 1279 134 HOH HOH . X 9 HOH B 80 1280 135 HOH HOH . X 9 HOH B 81 1281 139 HOH HOH . X 9 HOH B 82 1282 140 HOH HOH . X 9 HOH B 83 1283 141 HOH HOH . X 9 HOH B 84 1284 143 HOH HOH . X 9 HOH B 85 1285 144 HOH HOH . X 9 HOH B 86 1286 145 HOH HOH . X 9 HOH B 87 1287 147 HOH HOH . X 9 HOH B 88 1288 149 HOH HOH . X 9 HOH B 89 1289 155 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 6 154.764 -16.244 -73.812 1 91.76 ? C1 EDO 1107 A 1 HETATM 2 O O1 EDO . . . I 6 153.523 -16.693 -74.374 1 93.25 ? O1 EDO 1107 A 1 HETATM 3 C C2 EDO . . . I 6 154.611 -14.843 -73.227 1 94.83 ? C2 EDO 1107 A 1 HETATM 4 O O2 EDO . . . I 6 155.884 -14.387 -72.746 1 70.87 ? O2 EDO 1107 A 1 HETATM 5 H H11 EDO . . . I 6 155.082 -16.935 -73.029 1 110.11 ? H11 EDO 1107 A 1 HETATM 6 H H12 EDO . . . I 6 155.533 -16.234 -74.587 1 110.11 ? H12 EDO 1107 A 1 HETATM 7 H HO1 EDO . . . I 6 153.637 -17.581 -74.74 1 111.89 ? HO1 EDO 1107 A 1 HETATM 8 H H21 EDO . . . I 6 154.238 -14.161 -73.993 1 113.8 ? H21 EDO 1107 A 1 HETATM 9 H H22 EDO . . . I 6 153.89 -14.862 -72.406 1 113.8 ? H22 EDO 1107 A 1 HETATM 10 H HO2 EDO . . . I 6 155.789 -13.499 -72.375 1 85.04 ? HO2 EDO 1107 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #