data_4NXR # _model_server_result.job_id Q2nZ7PWVQrT7c7-r-_taVw _model_server_result.datetime_utc '2024-11-04 20:36:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nxr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":100}' # _entry.id 4NXR # _exptl.entry_id 4NXR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 251.302 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-(DIMETHYLAMINO)-1-NAPHTHALENESULFONIC ACID(DANSYL ACID)' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NXR _cell.length_a 26.358 _cell.length_b 50.323 _cell.length_c 61.942 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NXR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H13 N O3 S' _chem_comp.formula_weight 251.302 _chem_comp.id ANS _chem_comp.mon_nstd_flag . _chem_comp.name '5-(DIMETHYLAMINO)-1-NAPHTHALENESULFONIC ACID(DANSYL ACID)' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DANSYL ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ANS doub 13 n y C1 C8A ANS sing 14 n y C1 S ANS sing 15 n n C2 C3 ANS sing 16 n y C2 H2 ANS sing 17 n n C3 C4 ANS doub 18 n y C3 H3 ANS sing 19 n n C4 C4A ANS sing 20 n y C4 H4 ANS sing 21 n n C4A C5 ANS doub 22 n y C4A C8A ANS sing 23 n y C5 C6 ANS sing 24 n y C5 N ANS sing 25 n n C6 C7 ANS doub 26 n y C6 H6 ANS sing 27 n n C7 C8 ANS sing 28 n y C7 H7 ANS sing 29 n n C8 C8A ANS doub 30 n y C8 H8 ANS sing 31 n n N CM1 ANS sing 32 n n N CM2 ANS sing 33 n n CM1 HM11 ANS sing 34 n n CM1 HM12 ANS sing 35 n n CM1 HM13 ANS sing 36 n n CM2 HM21 ANS sing 37 n n CM2 HM22 ANS sing 38 n n CM2 HM23 ANS sing 39 n n S O1S ANS doub 40 n n S O2S ANS doub 41 n n S O3S ANS sing 42 n n O3S HOS3 ANS sing 43 n n # _atom_sites.entry_id 4NXR _atom_sites.fract_transf_matrix[1][1] 0.037939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019872 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EPE A 1 1001 101 EPE EPE . D 4 ANS B 1 100 100 ANS ANS . E 5 HOH A 1 1101 1 HOH HOH . E 5 HOH A 2 1102 2 HOH HOH . E 5 HOH A 3 1103 3 HOH HOH . E 5 HOH A 4 1104 4 HOH HOH . E 5 HOH A 5 1105 5 HOH HOH . E 5 HOH A 6 1106 7 HOH HOH . E 5 HOH A 7 1107 9 HOH HOH . E 5 HOH A 8 1108 10 HOH HOH . E 5 HOH A 9 1109 11 HOH HOH . E 5 HOH A 10 1110 12 HOH HOH . E 5 HOH A 11 1111 13 HOH HOH . E 5 HOH A 12 1112 14 HOH HOH . E 5 HOH A 13 1113 15 HOH HOH . E 5 HOH A 14 1114 16 HOH HOH . E 5 HOH A 15 1115 17 HOH HOH . E 5 HOH A 16 1116 18 HOH HOH . E 5 HOH A 17 1117 20 HOH HOH . E 5 HOH A 18 1118 21 HOH HOH . E 5 HOH A 19 1119 22 HOH HOH . E 5 HOH A 20 1120 23 HOH HOH . E 5 HOH A 21 1121 24 HOH HOH . E 5 HOH A 22 1122 25 HOH HOH . E 5 HOH A 23 1123 26 HOH HOH . E 5 HOH A 24 1124 28 HOH HOH . E 5 HOH A 25 1125 29 HOH HOH . E 5 HOH A 26 1126 30 HOH HOH . E 5 HOH A 27 1127 31 HOH HOH . E 5 HOH A 28 1128 32 HOH HOH . E 5 HOH A 29 1129 33 HOH HOH . E 5 HOH A 30 1130 34 HOH HOH . E 5 HOH A 31 1131 35 HOH HOH . E 5 HOH A 32 1132 36 HOH HOH . E 5 HOH A 33 1133 38 HOH HOH . E 5 HOH A 34 1134 39 HOH HOH . E 5 HOH A 35 1135 40 HOH HOH . E 5 HOH A 36 1136 41 HOH HOH . E 5 HOH A 37 1137 42 HOH HOH . E 5 HOH A 38 1138 43 HOH HOH . E 5 HOH A 39 1139 44 HOH HOH . E 5 HOH A 40 1140 45 HOH HOH . E 5 HOH A 41 1141 46 HOH HOH . E 5 HOH A 42 1142 47 HOH HOH . E 5 HOH A 43 1143 48 HOH HOH . E 5 HOH A 44 1144 49 HOH HOH . E 5 HOH A 45 1145 50 HOH HOH . E 5 HOH A 46 1146 51 HOH HOH . E 5 HOH A 47 1147 52 HOH HOH . E 5 HOH A 48 1148 53 HOH HOH . E 5 HOH A 49 1149 54 HOH HOH . E 5 HOH A 50 1150 56 HOH HOH . E 5 HOH A 51 1151 57 HOH HOH . E 5 HOH A 52 1152 58 HOH HOH . E 5 HOH A 53 1153 59 HOH HOH . E 5 HOH A 54 1154 60 HOH HOH . E 5 HOH A 55 1155 61 HOH HOH . E 5 HOH A 56 1156 62 HOH HOH . E 5 HOH A 57 1157 63 HOH HOH . E 5 HOH A 58 1158 64 HOH HOH . E 5 HOH A 59 1159 65 HOH HOH . E 5 HOH A 60 1160 66 HOH HOH . E 5 HOH A 61 1161 67 HOH HOH . E 5 HOH A 62 1162 68 HOH HOH . E 5 HOH A 63 1163 69 HOH HOH . E 5 HOH A 64 1164 70 HOH HOH . E 5 HOH A 65 1165 71 HOH HOH . E 5 HOH A 66 1166 72 HOH HOH . E 5 HOH A 67 1167 73 HOH HOH . E 5 HOH A 68 1168 74 HOH HOH . E 5 HOH A 69 1169 75 HOH HOH . E 5 HOH A 70 1170 76 HOH HOH . E 5 HOH A 71 1171 77 HOH HOH . E 5 HOH A 72 1172 78 HOH HOH . E 5 HOH A 73 1173 79 HOH HOH . E 5 HOH A 74 1174 80 HOH HOH . E 5 HOH A 75 1175 81 HOH HOH . E 5 HOH A 76 1176 82 HOH HOH . E 5 HOH A 77 1177 83 HOH HOH . E 5 HOH A 78 1178 84 HOH HOH . E 5 HOH A 79 1179 85 HOH HOH . E 5 HOH A 80 1180 86 HOH HOH . E 5 HOH A 81 1181 87 HOH HOH . E 5 HOH A 82 1182 88 HOH HOH . E 5 HOH A 83 1183 91 HOH HOH . E 5 HOH A 84 1184 92 HOH HOH . E 5 HOH A 85 1185 94 HOH HOH . E 5 HOH A 86 1186 96 HOH HOH . E 5 HOH A 87 1187 97 HOH HOH . E 5 HOH A 88 1188 98 HOH HOH . E 5 HOH A 89 1189 99 HOH HOH . F 5 HOH B 1 201 6 HOH HOH . F 5 HOH B 2 202 8 HOH HOH . F 5 HOH B 3 203 19 HOH HOH . F 5 HOH B 4 204 27 HOH HOH . F 5 HOH B 5 205 37 HOH HOH . F 5 HOH B 6 206 55 HOH HOH . F 5 HOH B 7 207 89 HOH HOH . F 5 HOH B 8 208 90 HOH HOH . F 5 HOH B 9 209 93 HOH HOH . F 5 HOH B 10 210 95 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ANS . . . D 4 11.867 -0.496 -23.946 1 18.03 ? C1 ANS 100 B 1 HETATM 2 C C2 ANS . . . D 4 12.123 0.263 -22.811 1 13.25 ? C2 ANS 100 B 1 HETATM 3 C C3 ANS . . . D 4 11.911 -0.247 -21.531 1 16.52 ? C3 ANS 100 B 1 HETATM 4 C C4 ANS . . . D 4 11.438 -1.537 -21.308 1 12.47 ? C4 ANS 100 B 1 HETATM 5 C C4A ANS . . . D 4 11.145 -2.368 -22.379 1 13.48 ? C4A ANS 100 B 1 HETATM 6 C C5 ANS . . . D 4 10.644 -3.754 -22.204 1 16.65 ? C5 ANS 100 B 1 HETATM 7 C C6 ANS . . . D 4 10.373 -4.524 -23.335 1 16.84 ? C6 ANS 100 B 1 HETATM 8 C C7 ANS . . . D 4 10.579 -4.021 -24.617 1 15.89 ? C7 ANS 100 B 1 HETATM 9 C C8 ANS . . . D 4 11.05 -2.727 -24.825 1 16.36 ? C8 ANS 100 B 1 HETATM 10 C C8A ANS . . . D 4 11.346 -1.88 -23.763 1 14.78 ? C8A ANS 100 B 1 HETATM 11 N N ANS . . . D 4 10.396 -4.297 -20.938 1 15.77 ? N ANS 100 B 1 HETATM 12 C CM1 ANS . . . D 4 11.145 -5.45 -20.468 1 20.19 ? CM1 ANS 100 B 1 HETATM 13 C CM2 ANS . . . D 4 9.32 -3.748 -20.122 1 13.77 ? CM2 ANS 100 B 1 HETATM 14 S S ANS . . . D 4 12.126 0.172 -25.381 1 26.02 ? S ANS 100 B 1 HETATM 15 O O1S ANS . . . D 4 12.946 1.323 -25.16 1 17.21 ? O1S ANS 100 B 1 HETATM 16 O O2S ANS . . . D 4 12.737 -0.749 -26.298 1 21.21 ? O2S ANS 100 B 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #