data_4NXV # _model_server_result.job_id hM_4lrPJIDa63HxZqHrslw _model_server_result.datetime_utc '2024-10-28 02:33:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nxv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":501}' # _entry.id 4NXV # _exptl.entry_id 4NXV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 65.81 _cell.angle_beta 84.36 _cell.angle_gamma 64.08 _cell.entry_id 4NXV _cell.length_a 72.343 _cell.length_b 79.093 _cell.length_c 80.052 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NXV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 PISA dimeric 2 software_defined_assembly 5 PISA dimeric 2 software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,N 1 1 B,G,H,I,J,O 2 1 C,K,L,P 3 1 D,M,Q 4 1 A,E,F,N 5 1 D,M,Q 5 2 B,G,H,I,J,O 6 1 C,K,L,P 6 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_546 x,y-1,z+1 1 0 0 0 1 0 0 0 1 -26.705473 -38.488993 72.667446 3 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 -7.867324 -32.647667 -72.667446 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 K N N ? 2 M N N # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 83 n n PB O2B GDP sing 84 n n PB O3B GDP sing 85 n n PB O3A GDP sing 86 n n O2B HOB2 GDP sing 87 n n O3B HOB3 GDP sing 88 n n O3A PA GDP sing 89 n n PA O1A GDP doub 90 n n PA O2A GDP sing 91 n n PA O5' GDP sing 92 n n O2A HOA2 GDP sing 93 n n O5' C5' GDP sing 94 n n C5' C4' GDP sing 95 n n C5' H5' GDP sing 96 n n C5' "H5''" GDP sing 97 n n C4' O4' GDP sing 98 n n C4' C3' GDP sing 99 n n C4' H4' GDP sing 100 n n O4' C1' GDP sing 101 n n C3' O3' GDP sing 102 n n C3' C2' GDP sing 103 n n C3' H3' GDP sing 104 n n O3' HO3' GDP sing 105 n n C2' O2' GDP sing 106 n n C2' C1' GDP sing 107 n n C2' H2' GDP sing 108 n n O2' HO2' GDP sing 109 n n C1' N9 GDP sing 110 n n C1' H1' GDP sing 111 n n N9 C8 GDP sing 112 n y N9 C4 GDP sing 113 n y C8 N7 GDP doub 114 n y C8 H8 GDP sing 115 n n N7 C5 GDP sing 116 n y C5 C6 GDP sing 117 n n C5 C4 GDP doub 118 n y C6 O6 GDP doub 119 n n C6 N1 GDP sing 120 n n N1 C2 GDP sing 121 n n N1 HN1 GDP sing 122 n n C2 N2 GDP sing 123 n n C2 N3 GDP doub 124 n n N2 HN21 GDP sing 125 n n N2 HN22 GDP sing 126 n n N3 C4 GDP sing 127 n n # _atom_sites.entry_id 4NXV _atom_sites.fract_transf_matrix[1][1] 0.013823 _atom_sites.fract_transf_matrix[1][2] -0.006719 _atom_sites.fract_transf_matrix[1][3] 0.001522 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014058 _atom_sites.fract_transf_matrix[2][3] -0.006317 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013762 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 GDP A 1 501 1 GDP GDP . F 3 SO4 A 1 502 3 SO4 SO4 . G 2 GDP B 1 501 1 GDP GDP . H 3 SO4 B 1 502 1 SO4 SO4 . I 3 SO4 B 1 503 2 SO4 SO4 . J 3 SO4 B 1 504 4 SO4 SO4 . K 2 GDP C 1 501 1 GDP GDP . L 4 GOL C 1 502 4 GOL GOL . M 2 GDP D 1 501 1 GDP GDP . N 5 HOH A 1 601 9 HOH HOH . N 5 HOH A 2 602 20 HOH HOH . N 5 HOH A 3 603 23 HOH HOH . N 5 HOH A 4 604 27 HOH HOH . N 5 HOH A 5 605 34 HOH HOH . N 5 HOH A 6 606 38 HOH HOH . N 5 HOH A 7 607 40 HOH HOH . N 5 HOH A 8 608 45 HOH HOH . N 5 HOH A 9 609 47 HOH HOH . N 5 HOH A 10 610 49 HOH HOH . N 5 HOH A 11 611 51 HOH HOH . N 5 HOH A 12 612 56 HOH HOH . N 5 HOH A 13 613 57 HOH HOH . N 5 HOH A 14 614 60 HOH HOH . N 5 HOH A 15 615 62 HOH HOH . N 5 HOH A 16 616 64 HOH HOH . N 5 HOH A 17 617 65 HOH HOH . N 5 HOH A 18 618 68 HOH HOH . N 5 HOH A 19 619 75 HOH HOH . N 5 HOH A 20 620 88 HOH HOH . N 5 HOH A 21 621 93 HOH HOH . N 5 HOH A 22 622 94 HOH HOH . N 5 HOH A 23 623 99 HOH HOH . N 5 HOH A 24 624 101 HOH HOH . N 5 HOH A 25 625 103 HOH HOH . N 5 HOH A 26 626 104 HOH HOH . N 5 HOH A 27 627 106 HOH HOH . N 5 HOH A 28 628 109 HOH HOH . N 5 HOH A 29 629 110 HOH HOH . N 5 HOH A 30 630 111 HOH HOH . N 5 HOH A 31 631 112 HOH HOH . N 5 HOH A 32 632 115 HOH HOH . N 5 HOH A 33 633 118 HOH HOH . N 5 HOH A 34 634 122 HOH HOH . N 5 HOH A 35 635 125 HOH HOH . N 5 HOH A 36 636 126 HOH HOH . N 5 HOH A 37 637 130 HOH HOH . N 5 HOH A 38 638 131 HOH HOH . N 5 HOH A 39 639 132 HOH HOH . N 5 HOH A 40 640 133 HOH HOH . N 5 HOH A 41 641 137 HOH HOH . N 5 HOH A 42 642 140 HOH HOH . N 5 HOH A 43 643 141 HOH HOH . N 5 HOH A 44 644 142 HOH HOH . N 5 HOH A 45 645 146 HOH HOH . N 5 HOH A 46 646 150 HOH HOH . N 5 HOH A 47 647 153 HOH HOH . N 5 HOH A 48 648 154 HOH HOH . N 5 HOH A 49 649 155 HOH HOH . N 5 HOH A 50 650 156 HOH HOH . N 5 HOH A 51 651 157 HOH HOH . N 5 HOH A 52 652 158 HOH HOH . N 5 HOH A 53 653 159 HOH HOH . N 5 HOH A 54 654 160 HOH HOH . N 5 HOH A 55 655 161 HOH HOH . N 5 HOH A 56 656 162 HOH HOH . N 5 HOH A 57 657 163 HOH HOH . N 5 HOH A 58 658 164 HOH HOH . N 5 HOH A 59 659 165 HOH HOH . N 5 HOH A 60 660 166 HOH HOH . N 5 HOH A 61 661 168 HOH HOH . N 5 HOH A 62 662 169 HOH HOH . N 5 HOH A 63 663 170 HOH HOH . N 5 HOH A 64 664 171 HOH HOH . N 5 HOH A 65 665 172 HOH HOH . N 5 HOH A 66 666 173 HOH HOH . N 5 HOH A 67 667 176 HOH HOH . N 5 HOH A 68 668 177 HOH HOH . N 5 HOH A 69 669 178 HOH HOH . N 5 HOH A 70 670 179 HOH HOH . N 5 HOH A 71 671 180 HOH HOH . N 5 HOH A 72 672 181 HOH HOH . N 5 HOH A 73 673 182 HOH HOH . N 5 HOH A 74 674 239 HOH HOH . N 5 HOH A 75 675 240 HOH HOH . N 5 HOH A 76 676 251 HOH HOH . N 5 HOH A 77 677 253 HOH HOH . N 5 HOH A 78 678 262 HOH HOH . N 5 HOH A 79 679 263 HOH HOH . N 5 HOH A 80 680 265 HOH HOH . N 5 HOH A 81 681 282 HOH HOH . N 5 HOH A 82 682 288 HOH HOH . N 5 HOH A 83 683 291 HOH HOH . N 5 HOH A 84 684 310 HOH HOH . N 5 HOH A 85 685 311 HOH HOH . N 5 HOH A 86 686 312 HOH HOH . N 5 HOH A 87 687 313 HOH HOH . N 5 HOH A 88 688 314 HOH HOH . N 5 HOH A 89 689 315 HOH HOH . N 5 HOH A 90 690 316 HOH HOH . N 5 HOH A 91 691 317 HOH HOH . N 5 HOH A 92 692 318 HOH HOH . N 5 HOH A 93 693 352 HOH HOH . N 5 HOH A 94 694 353 HOH HOH . N 5 HOH A 95 695 354 HOH HOH . N 5 HOH A 96 696 84 HOH HOH . O 5 HOH B 1 601 2 HOH HOH . O 5 HOH B 2 602 8 HOH HOH . O 5 HOH B 3 603 10 HOH HOH . O 5 HOH B 4 604 11 HOH HOH . O 5 HOH B 5 605 14 HOH HOH . O 5 HOH B 6 606 16 HOH HOH . O 5 HOH B 7 607 17 HOH HOH . O 5 HOH B 8 608 22 HOH HOH . O 5 HOH B 9 609 25 HOH HOH . O 5 HOH B 10 610 30 HOH HOH . O 5 HOH B 11 611 32 HOH HOH . O 5 HOH B 12 612 35 HOH HOH . O 5 HOH B 13 613 36 HOH HOH . O 5 HOH B 14 614 37 HOH HOH . O 5 HOH B 15 615 39 HOH HOH . O 5 HOH B 16 616 41 HOH HOH . O 5 HOH B 17 617 48 HOH HOH . O 5 HOH B 18 618 67 HOH HOH . O 5 HOH B 19 619 69 HOH HOH . O 5 HOH B 20 620 70 HOH HOH . O 5 HOH B 21 621 72 HOH HOH . O 5 HOH B 22 622 78 HOH HOH . O 5 HOH B 23 623 79 HOH HOH . O 5 HOH B 24 624 80 HOH HOH . O 5 HOH B 25 625 82 HOH HOH . O 5 HOH B 26 626 83 HOH HOH . O 5 HOH B 27 627 85 HOH HOH . O 5 HOH B 28 628 86 HOH HOH . O 5 HOH B 29 629 90 HOH HOH . O 5 HOH B 30 630 92 HOH HOH . O 5 HOH B 31 631 98 HOH HOH . O 5 HOH B 32 632 107 HOH HOH . O 5 HOH B 33 633 113 HOH HOH . O 5 HOH B 34 634 114 HOH HOH . O 5 HOH B 35 635 120 HOH HOH . O 5 HOH B 36 636 124 HOH HOH . O 5 HOH B 37 637 129 HOH HOH . O 5 HOH B 38 638 147 HOH HOH . O 5 HOH B 39 639 151 HOH HOH . O 5 HOH B 40 640 184 HOH HOH . O 5 HOH B 41 641 185 HOH HOH . O 5 HOH B 42 642 186 HOH HOH . O 5 HOH B 43 643 187 HOH HOH . O 5 HOH B 44 644 188 HOH HOH . O 5 HOH B 45 645 189 HOH HOH . O 5 HOH B 46 646 190 HOH HOH . O 5 HOH B 47 647 191 HOH HOH . O 5 HOH B 48 648 192 HOH HOH . O 5 HOH B 49 649 193 HOH HOH . O 5 HOH B 50 650 194 HOH HOH . O 5 HOH B 51 651 195 HOH HOH . O 5 HOH B 52 652 196 HOH HOH . O 5 HOH B 53 653 197 HOH HOH . O 5 HOH B 54 654 198 HOH HOH . O 5 HOH B 55 655 199 HOH HOH . O 5 HOH B 56 656 200 HOH HOH . O 5 HOH B 57 657 201 HOH HOH . O 5 HOH B 58 658 202 HOH HOH . O 5 HOH B 59 659 203 HOH HOH . O 5 HOH B 60 660 204 HOH HOH . O 5 HOH B 61 661 205 HOH HOH . O 5 HOH B 62 662 206 HOH HOH . O 5 HOH B 63 663 244 HOH HOH . O 5 HOH B 64 664 248 HOH HOH . O 5 HOH B 65 665 250 HOH HOH . O 5 HOH B 66 666 252 HOH HOH . O 5 HOH B 67 667 254 HOH HOH . O 5 HOH B 68 668 256 HOH HOH . O 5 HOH B 69 669 258 HOH HOH . O 5 HOH B 70 670 259 HOH HOH . O 5 HOH B 71 671 261 HOH HOH . O 5 HOH B 72 672 264 HOH HOH . O 5 HOH B 73 673 267 HOH HOH . O 5 HOH B 74 674 270 HOH HOH . O 5 HOH B 75 675 272 HOH HOH . O 5 HOH B 76 676 277 HOH HOH . O 5 HOH B 77 677 278 HOH HOH . O 5 HOH B 78 678 281 HOH HOH . O 5 HOH B 79 679 283 HOH HOH . O 5 HOH B 80 680 286 HOH HOH . O 5 HOH B 81 681 292 HOH HOH . O 5 HOH B 82 682 293 HOH HOH . O 5 HOH B 83 683 294 HOH HOH . O 5 HOH B 84 684 295 HOH HOH . O 5 HOH B 85 685 296 HOH HOH . O 5 HOH B 86 686 297 HOH HOH . O 5 HOH B 87 687 298 HOH HOH . O 5 HOH B 88 688 299 HOH HOH . O 5 HOH B 89 689 300 HOH HOH . O 5 HOH B 90 690 301 HOH HOH . O 5 HOH B 91 691 302 HOH HOH . O 5 HOH B 92 692 319 HOH HOH . O 5 HOH B 93 693 320 HOH HOH . O 5 HOH B 94 694 321 HOH HOH . O 5 HOH B 95 695 322 HOH HOH . O 5 HOH B 96 696 323 HOH HOH . O 5 HOH B 97 697 324 HOH HOH . O 5 HOH B 98 698 325 HOH HOH . O 5 HOH B 99 699 326 HOH HOH . O 5 HOH B 100 700 327 HOH HOH . O 5 HOH B 101 701 328 HOH HOH . O 5 HOH B 102 702 329 HOH HOH . O 5 HOH B 103 703 330 HOH HOH . O 5 HOH B 104 704 331 HOH HOH . O 5 HOH B 105 705 332 HOH HOH . O 5 HOH B 106 706 333 HOH HOH . O 5 HOH B 107 707 334 HOH HOH . O 5 HOH B 108 708 335 HOH HOH . O 5 HOH B 109 709 336 HOH HOH . O 5 HOH B 110 710 337 HOH HOH . O 5 HOH B 111 711 338 HOH HOH . O 5 HOH B 112 712 339 HOH HOH . O 5 HOH B 113 713 355 HOH HOH . P 5 HOH C 1 601 96 HOH HOH . P 5 HOH C 2 602 1 HOH HOH . P 5 HOH C 3 603 3 HOH HOH . P 5 HOH C 4 604 4 HOH HOH . P 5 HOH C 5 605 5 HOH HOH . P 5 HOH C 6 606 6 HOH HOH . P 5 HOH C 7 607 7 HOH HOH . P 5 HOH C 8 608 15 HOH HOH . P 5 HOH C 9 609 18 HOH HOH . P 5 HOH C 10 610 19 HOH HOH . P 5 HOH C 11 611 21 HOH HOH . P 5 HOH C 12 612 24 HOH HOH . P 5 HOH C 13 613 26 HOH HOH . P 5 HOH C 14 614 28 HOH HOH . P 5 HOH C 15 615 29 HOH HOH . P 5 HOH C 16 616 31 HOH HOH . P 5 HOH C 17 617 33 HOH HOH . P 5 HOH C 18 618 43 HOH HOH . P 5 HOH C 19 619 46 HOH HOH . P 5 HOH C 20 620 53 HOH HOH . P 5 HOH C 21 621 54 HOH HOH . P 5 HOH C 22 622 55 HOH HOH . P 5 HOH C 23 623 59 HOH HOH . P 5 HOH C 24 624 63 HOH HOH . P 5 HOH C 25 625 71 HOH HOH . P 5 HOH C 26 626 73 HOH HOH . P 5 HOH C 27 627 81 HOH HOH . P 5 HOH C 28 628 87 HOH HOH . P 5 HOH C 29 629 89 HOH HOH . P 5 HOH C 30 630 91 HOH HOH . P 5 HOH C 31 631 97 HOH HOH . P 5 HOH C 32 632 100 HOH HOH . P 5 HOH C 33 633 116 HOH HOH . P 5 HOH C 34 634 117 HOH HOH . P 5 HOH C 35 635 119 HOH HOH . P 5 HOH C 36 636 121 HOH HOH . P 5 HOH C 37 637 123 HOH HOH . P 5 HOH C 38 638 127 HOH HOH . P 5 HOH C 39 639 128 HOH HOH . P 5 HOH C 40 640 134 HOH HOH . P 5 HOH C 41 641 139 HOH HOH . P 5 HOH C 42 642 143 HOH HOH . P 5 HOH C 43 643 144 HOH HOH . P 5 HOH C 44 644 145 HOH HOH . P 5 HOH C 45 645 149 HOH HOH . P 5 HOH C 46 646 152 HOH HOH . P 5 HOH C 47 647 167 HOH HOH . P 5 HOH C 48 648 207 HOH HOH . P 5 HOH C 49 649 208 HOH HOH . P 5 HOH C 50 650 209 HOH HOH . P 5 HOH C 51 651 210 HOH HOH . P 5 HOH C 52 652 211 HOH HOH . P 5 HOH C 53 653 212 HOH HOH . P 5 HOH C 54 654 213 HOH HOH . P 5 HOH C 55 655 214 HOH HOH . P 5 HOH C 56 656 215 HOH HOH . P 5 HOH C 57 657 216 HOH HOH . P 5 HOH C 58 658 217 HOH HOH . P 5 HOH C 59 659 218 HOH HOH . P 5 HOH C 60 660 219 HOH HOH . P 5 HOH C 61 661 220 HOH HOH . P 5 HOH C 62 662 221 HOH HOH . P 5 HOH C 63 663 223 HOH HOH . P 5 HOH C 64 664 224 HOH HOH . P 5 HOH C 65 665 225 HOH HOH . P 5 HOH C 66 666 226 HOH HOH . P 5 HOH C 67 667 227 HOH HOH . P 5 HOH C 68 668 247 HOH HOH . P 5 HOH C 69 669 249 HOH HOH . P 5 HOH C 70 670 257 HOH HOH . P 5 HOH C 71 671 268 HOH HOH . P 5 HOH C 72 672 269 HOH HOH . P 5 HOH C 73 673 271 HOH HOH . P 5 HOH C 74 674 273 HOH HOH . P 5 HOH C 75 675 274 HOH HOH . P 5 HOH C 76 676 276 HOH HOH . P 5 HOH C 77 677 279 HOH HOH . P 5 HOH C 78 678 284 HOH HOH . P 5 HOH C 79 679 285 HOH HOH . P 5 HOH C 80 680 287 HOH HOH . P 5 HOH C 81 681 289 HOH HOH . P 5 HOH C 82 682 290 HOH HOH . P 5 HOH C 83 683 303 HOH HOH . P 5 HOH C 84 684 304 HOH HOH . P 5 HOH C 85 685 305 HOH HOH . P 5 HOH C 86 686 306 HOH HOH . P 5 HOH C 87 687 307 HOH HOH . P 5 HOH C 88 688 308 HOH HOH . P 5 HOH C 89 689 309 HOH HOH . P 5 HOH C 90 690 340 HOH HOH . P 5 HOH C 91 691 341 HOH HOH . P 5 HOH C 92 692 342 HOH HOH . P 5 HOH C 93 693 343 HOH HOH . P 5 HOH C 94 694 344 HOH HOH . P 5 HOH C 95 695 345 HOH HOH . P 5 HOH C 96 696 346 HOH HOH . P 5 HOH C 97 697 347 HOH HOH . P 5 HOH C 98 698 348 HOH HOH . P 5 HOH C 99 699 356 HOH HOH . Q 5 HOH D 1 601 12 HOH HOH . Q 5 HOH D 2 602 13 HOH HOH . Q 5 HOH D 3 603 42 HOH HOH . Q 5 HOH D 4 604 44 HOH HOH . Q 5 HOH D 5 605 50 HOH HOH . Q 5 HOH D 6 606 52 HOH HOH . Q 5 HOH D 7 607 58 HOH HOH . Q 5 HOH D 8 608 61 HOH HOH . Q 5 HOH D 9 609 66 HOH HOH . Q 5 HOH D 10 610 74 HOH HOH . Q 5 HOH D 11 611 76 HOH HOH . Q 5 HOH D 12 612 77 HOH HOH . Q 5 HOH D 13 613 95 HOH HOH . Q 5 HOH D 14 614 102 HOH HOH . Q 5 HOH D 15 615 105 HOH HOH . Q 5 HOH D 16 616 108 HOH HOH . Q 5 HOH D 17 617 135 HOH HOH . Q 5 HOH D 18 618 136 HOH HOH . Q 5 HOH D 19 619 138 HOH HOH . Q 5 HOH D 20 620 148 HOH HOH . Q 5 HOH D 21 621 174 HOH HOH . Q 5 HOH D 22 622 175 HOH HOH . Q 5 HOH D 23 623 183 HOH HOH . Q 5 HOH D 24 624 222 HOH HOH . Q 5 HOH D 25 625 228 HOH HOH . Q 5 HOH D 26 626 229 HOH HOH . Q 5 HOH D 27 627 230 HOH HOH . Q 5 HOH D 28 628 231 HOH HOH . Q 5 HOH D 29 629 232 HOH HOH . Q 5 HOH D 30 630 233 HOH HOH . Q 5 HOH D 31 631 234 HOH HOH . Q 5 HOH D 32 632 235 HOH HOH . Q 5 HOH D 33 633 236 HOH HOH . Q 5 HOH D 34 634 237 HOH HOH . Q 5 HOH D 35 635 238 HOH HOH . Q 5 HOH D 36 636 241 HOH HOH . Q 5 HOH D 37 637 242 HOH HOH . Q 5 HOH D 38 638 243 HOH HOH . Q 5 HOH D 39 639 245 HOH HOH . Q 5 HOH D 40 640 246 HOH HOH . Q 5 HOH D 41 641 255 HOH HOH . Q 5 HOH D 42 642 260 HOH HOH . Q 5 HOH D 43 643 266 HOH HOH . Q 5 HOH D 44 644 275 HOH HOH . Q 5 HOH D 45 645 280 HOH HOH . Q 5 HOH D 46 646 349 HOH HOH . Q 5 HOH D 47 647 350 HOH HOH . Q 5 HOH D 48 648 351 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . E 2 -4.747 -27.136 -11.544 1 37.64 ? PB GDP 501 A 1 HETATM 2 O O1B GDP . . . E 2 -5.272 -25.733 -11.364 1 37.82 ? O1B GDP 501 A 1 HETATM 3 O O2B GDP . . . E 2 -3.928 -27.2 -12.813 1 40.28 ? O2B GDP 501 A 1 HETATM 4 O O3B GDP . . . E 2 -5.899 -28.086 -11.651 1 40.34 ? O3B GDP 501 A 1 HETATM 5 O O3A GDP . . . E 2 -3.853 -27.484 -10.309 1 50.12 ? O3A GDP 501 A 1 HETATM 6 P PA GDP . . . E 2 -4.278 -28.596 -9.292 1 39.87 ? PA GDP 501 A 1 HETATM 7 O O1A GDP . . . E 2 -3.138 -28.851 -8.323 1 35.11 ? O1A GDP 501 A 1 HETATM 8 O O2A GDP . . . E 2 -5.51 -28.144 -8.53 1 43.72 ? O2A GDP 501 A 1 HETATM 9 O O5' GDP . . . E 2 -4.595 -29.905 -10.105 1 53.11 ? O5' GDP 501 A 1 HETATM 10 C C5' GDP . . . E 2 -5.065 -31.074 -9.5 1 47.38 ? C5' GDP 501 A 1 HETATM 11 C C4' GDP . . . E 2 -5.042 -32.143 -10.572 1 43.83 ? C4' GDP 501 A 1 HETATM 12 O O4' GDP . . . E 2 -4.085 -33.126 -10.269 1 46.92 ? O4' GDP 501 A 1 HETATM 13 C C3' GDP . . . E 2 -6.379 -32.794 -10.762 1 43.09 ? C3' GDP 501 A 1 HETATM 14 O O3' GDP . . . E 2 -6.581 -33.224 -12.064 1 45.72 ? O3' GDP 501 A 1 HETATM 15 C C2' GDP . . . E 2 -6.243 -33.891 -9.768 1 43.55 ? C2' GDP 501 A 1 HETATM 16 O O2' GDP . . . E 2 -7.059 -34.967 -10.067 1 36.93 ? O2' GDP 501 A 1 HETATM 17 C C1' GDP . . . E 2 -4.775 -34.251 -9.801 1 46.61 ? C1' GDP 501 A 1 HETATM 18 N N9 GDP . . . E 2 -4.241 -34.699 -8.518 1 44.2 ? N9 GDP 501 A 1 HETATM 19 C C8 GDP . . . E 2 -3.287 -35.638 -8.354 1 44.28 ? C8 GDP 501 A 1 HETATM 20 N N7 GDP . . . E 2 -3.028 -35.794 -7.065 1 47.51 ? N7 GDP 501 A 1 HETATM 21 C C5 GDP . . . E 2 -3.796 -34.962 -6.36 1 45.06 ? C5 GDP 501 A 1 HETATM 22 C C6 GDP . . . E 2 -3.957 -34.685 -4.968 1 46.92 ? C6 GDP 501 A 1 HETATM 23 O O6 GDP . . . E 2 -3.29 -35.287 -4.137 1 53.54 ? O6 GDP 501 A 1 HETATM 24 N N1 GDP . . . E 2 -4.885 -33.722 -4.579 1 45.72 ? N1 GDP 501 A 1 HETATM 25 C C2 GDP . . . E 2 -5.703 -32.974 -5.503 1 43.26 ? C2 GDP 501 A 1 HETATM 26 N N2 GDP . . . E 2 -6.662 -31.966 -5.042 1 39.63 ? N2 GDP 501 A 1 HETATM 27 N N3 GDP . . . E 2 -5.558 -33.223 -6.802 1 44.38 ? N3 GDP 501 A 1 HETATM 28 C C4 GDP . . . E 2 -4.589 -34.239 -7.274 1 43.12 ? C4 GDP 501 A 1 HETATM 29 H H5' GDP . . . E 2 -4.476 -31.33 -8.765 1 56.85 ? H5' GDP 501 A 1 HETATM 30 H "H5''" GDP . . . E 2 -5.974 -30.942 -9.171 1 56.85 ? "H5''" GDP 501 A 1 HETATM 31 H H4' GDP . . . E 2 -4.776 -31.727 -11.421 1 52.6 ? H4' GDP 501 A 1 HETATM 32 H H3' GDP . . . E 2 -7.082 -32.155 -10.526 1 51.71 ? H3' GDP 501 A 1 HETATM 33 H HO3' GDP . . . E 2 -5.83 -33.125 -12.529 1 54.87 ? HO3' GDP 501 A 1 HETATM 34 H H2' GDP . . . E 2 -6.471 -33.554 -8.902 1 52.26 ? H2' GDP 501 A 1 HETATM 35 H HO2' GDP . . . E 2 -7.854 -34.667 -10.369 1 44.32 ? HO2' GDP 501 A 1 HETATM 36 H H1' GDP . . . E 2 -4.632 -34.986 -10.44 1 55.94 ? H1' GDP 501 A 1 HETATM 37 H H8 GDP . . . E 2 -2.864 -36.122 -9.064 1 53.14 ? H8 GDP 501 A 1 HETATM 38 H HN1 GDP . . . E 2 -4.98 -33.552 -3.693 1 54.87 ? HN1 GDP 501 A 1 HETATM 39 H HN21 GDP . . . E 2 -7.174 -31.503 -5.654 1 47.56 ? HN21 GDP 501 A 1 HETATM 40 H HN22 GDP . . . E 2 -6.755 -31.802 -4.158 1 47.56 ? HN22 GDP 501 A 1 # _model_server_stats.io_time_ms 128 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 49 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 40 #