# Name: GDP # Created by ModelServer 0.9.12 # model_server_result.job_id: vm8hqeLpQLsSZ1RDbLuNiA # model_server_result.datetime_utc: 2025-07-04 02:36:25 # model_server_result.server_version: 0.9.12 # model_server_result.query_name: ligand # model_server_result.source_id: pdb-bcif # model_server_result.entry_id: 4nxv # model_server_params.name: atom_site # model_server_params.value: {"label_asym_id":"E","auth_seq_id":501} # model_server_stats.io_time_ms: 96 # model_server_stats.parse_time_ms: 15 # model_server_stats.create_model_time_ms: 26 # model_server_stats.query_time_ms: 327 # model_server_stats.encode_time_ms: 2 # model_server_stats.element_count: 40 @MOLECULE GDP 40 42 1 **** **** @ATOM 1 PB -4.747 -27.136 -11.544 P.3 1 GDP 0.000 2 O1B -5.272 -25.733 -11.364 O.2 1 GDP 0.000 3 O2B -3.928 -27.200 -12.813 O.3 1 GDP 0.000 4 O3B -5.899 -28.086 -11.651 O.3 1 GDP 0.000 5 O3A -3.853 -27.484 -10.309 O.3 1 GDP 0.000 6 PA -4.278 -28.596 -9.292 P.3 1 GDP 0.000 7 O1A -3.138 -28.851 -8.323 O.2 1 GDP 0.000 8 O2A -5.510 -28.144 -8.530 O.3 1 GDP 0.000 9 O5' -4.595 -29.905 -10.105 O.3 1 GDP 0.000 10 C5' -5.065 -31.074 -9.500 C.3 1 GDP 0.000 11 C4' -5.042 -32.143 -10.572 C.3 1 GDP 0.000 12 O4' -4.085 -33.126 -10.269 O.3 1 GDP 0.000 13 C3' -6.379 -32.794 -10.762 C.3 1 GDP 0.000 14 O3' -6.581 -33.224 -12.064 O.3 1 GDP 0.000 15 C2' -6.243 -33.891 -9.768 C.3 1 GDP 0.000 16 O2' -7.059 -34.967 -10.067 O.3 1 GDP 0.000 17 C1' -4.775 -34.251 -9.801 C.3 1 GDP 0.000 18 N9 -4.241 -34.699 -8.518 N.ar 1 GDP 0.000 19 C8 -3.287 -35.638 -8.354 C.ar 1 GDP 0.000 20 N7 -3.028 -35.794 -7.065 N.ar 1 GDP 0.000 21 C5 -3.796 -34.962 -6.360 C.ar 1 GDP 0.000 22 C6 -3.957 -34.685 -4.968 C.2 1 GDP 0.000 23 O6 -3.290 -35.287 -4.137 O.2 1 GDP 0.000 24 N1 -4.885 -33.722 -4.579 N.am 1 GDP 0.000 25 C2 -5.703 -32.974 -5.503 C.cat 1 GDP 0.000 26 N2 -6.662 -31.966 -5.042 N.pl3 1 GDP 0.000 27 N3 -5.558 -33.223 -6.802 N.2 1 GDP 0.000 28 C4 -4.589 -34.239 -7.274 C.ar 1 GDP 0.000 29 H5' -4.476 -31.330 -8.765 H 1 GDP 0.000 30 H5'' -5.974 -30.942 -9.171 H 1 GDP 0.000 31 H4' -4.776 -31.727 -11.421 H 1 GDP 0.000 32 H3' -7.082 -32.155 -10.526 H 1 GDP 0.000 33 HO3' -5.830 -33.125 -12.529 H 1 GDP 0.000 34 H2' -6.471 -33.554 -8.902 H 1 GDP 0.000 35 HO2' -7.854 -34.667 -10.369 H 1 GDP 0.000 36 H1' -4.632 -34.986 -10.440 H 1 GDP 0.000 37 H8 -2.864 -36.122 -9.064 H 1 GDP 0.000 38 HN1 -4.980 -33.552 -3.693 H 1 GDP 0.000 39 HN21 -7.174 -31.503 -5.654 H 1 GDP 0.000 40 HN22 -6.755 -31.802 -4.158 H 1 GDP 0.000 @BOND 1 1 2 2 2 1 3 1 3 1 4 1 4 1 5 1 5 5 6 1 6 6 7 2 7 6 8 1 8 6 9 1 9 9 10 1 10 10 11 1 11 10 29 1 12 10 30 1 13 11 12 1 14 11 13 1 15 11 31 1 16 12 17 1 17 13 14 1 18 13 15 1 19 13 32 1 20 14 33 1 21 15 16 1 22 15 17 1 23 15 34 1 24 16 35 1 25 17 18 1 26 17 36 1 27 18 19 ar 28 18 28 ar 29 19 20 ar 30 19 37 1 31 20 21 ar 32 21 22 1 33 21 28 ar 34 22 23 2 35 22 24 1 36 24 25 1 37 24 38 1 38 25 26 1 39 25 27 2 40 26 39 1 41 26 40 1 42 27 28 1 @SUBSTRUCTURE 1 GDP 1