data_4NY4 # _model_server_result.job_id zZpwl0uT_vIwZFjnqKD5ZQ _model_server_result.datetime_utc '2024-12-23 05:35:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ny4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 4NY4 # _exptl.entry_id 4NY4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 465.47 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (8R)-3,3-difluoro-8-[4-fluoro-3-(pyridin-3-yl)phenyl]-8-(4-methoxy-3-methylphenyl)-2,3,4,8-tetrahydroimidazo[1,5-a]pyrimidin-6-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NY4 _cell.length_a 78.548 _cell.length_b 101.692 _cell.length_c 132.422 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NY4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -78.548 0 0 3 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -78.548 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 419 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N32 2QH . A 2QH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? # _chem_comp.formula 'C25 H22 F3 N5 O' _chem_comp.formula_weight 465.47 _chem_comp.id 2QH _chem_comp.mon_nstd_flag . _chem_comp.name (8R)-3,3-difluoro-8-[4-fluoro-3-(pyridin-3-yl)phenyl]-8-(4-methoxy-3-methylphenyl)-2,3,4,8-tetrahydroimidazo[1,5-a]pyrimidin-6-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F34 C25 2QH sing 1 n n C24 C25 2QH doub 2 n y C24 C23 2QH sing 3 n y C25 C26 2QH sing 4 n y C29 C30 2QH doub 5 n y C29 C28 2QH sing 6 n y C23 C22 2QH doub 7 n y C30 C31 2QH sing 8 n y C26 C28 2QH sing 9 n n C26 C27 2QH doub 10 n y F20 C14 2QH sing 11 n n C28 C33 2QH doub 12 n y C31 N32 2QH doub 13 n y C13 N12 2QH sing 14 n n C13 C14 2QH sing 15 n n C33 N32 2QH sing 16 n y N12 C11 2QH doub 17 n n C22 C27 2QH sing 18 n y C22 C10 2QH sing 19 n n C14 F21 2QH sing 20 n n C14 C15 2QH sing 21 n n C11 C10 2QH sing 22 n n C11 N16 2QH sing 23 n n C10 C4 2QH sing 24 n n C10 N18 2QH sing 25 n n C3 C4 2QH doub 26 n y C3 C2 2QH sing 27 n y C15 N16 2QH sing 28 n n C1 C2 2QH sing 29 n n N16 C17 2QH sing 30 n n C4 C5 2QH sing 31 n y N18 C17 2QH doub 32 n n C17 N19 2QH sing 33 n n C2 C7 2QH doub 34 n y C5 C6 2QH doub 35 n y C7 C6 2QH sing 36 n y C7 O8 2QH sing 37 n n O8 C9 2QH sing 38 n n C1 H1 2QH sing 39 n n C1 H2 2QH sing 40 n n C1 H3 2QH sing 41 n n C3 H4 2QH sing 42 n n C5 H5 2QH sing 43 n n C6 H6 2QH sing 44 n n C9 H7 2QH sing 45 n n C9 H8 2QH sing 46 n n C9 H9 2QH sing 47 n n C13 H10 2QH sing 48 n n C13 H11 2QH sing 49 n n C15 H12 2QH sing 50 n n C15 H13 2QH sing 51 n n N19 H14 2QH sing 52 n n N19 H15 2QH sing 53 n n C23 H16 2QH sing 54 n n C24 H17 2QH sing 55 n n C27 H18 2QH sing 56 n n C29 H19 2QH sing 57 n n C30 H20 2QH sing 58 n n C31 H21 2QH sing 59 n n C33 H22 2QH sing 60 n n # _atom_sites.entry_id 4NY4 _atom_sites.fract_transf_matrix[1][1] 0.012731 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007552 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 500 HEM HEM . C 3 2QH A 1 602 1 2QH 2QH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 2QH . . . C 3 -25.75 -19.94 -9.095 1 136.93 ? C1 2QH 602 A 1 HETATM 2 C C2 2QH . . . C 3 -24.642 -19.177 -8.416 1 137.38 ? C2 2QH 602 A 1 HETATM 3 C C3 2QH . . . C 3 -23.796 -18.377 -9.16 1 137.6 ? C3 2QH 602 A 1 HETATM 4 C C4 2QH . . . C 3 -22.779 -17.677 -8.538 1 137.91 ? C4 2QH 602 A 1 HETATM 5 C C5 2QH . . . C 3 -22.606 -17.776 -7.17 1 137.86 ? C5 2QH 602 A 1 HETATM 6 C C6 2QH . . . C 3 -23.448 -18.574 -6.421 1 137.86 ? C6 2QH 602 A 1 HETATM 7 C C7 2QH . . . C 3 -24.47 -19.278 -7.043 1 137.8 ? C7 2QH 602 A 1 HETATM 8 O O8 2QH . . . C 3 -25.3 -20.064 -6.309 1 137.94 ? O8 2QH 602 A 1 HETATM 9 C C9 2QH . . . C 3 -24.715 -21.191 -5.654 1 137.69 ? C9 2QH 602 A 1 HETATM 10 C C10 2QH . . . C 3 -21.858 -16.805 -9.352 1 138.22 ? C10 2QH 602 A 1 HETATM 11 C C11 2QH . . . C 3 -22.563 -15.549 -9.786 1 138.1 ? C11 2QH 602 A 1 HETATM 12 N N12 2QH . . . C 3 -23.524 -15.35 -10.618 1 138.04 ? N12 2QH 602 A 1 HETATM 13 C C13 2QH . . . C 3 -24.049 -13.992 -10.877 1 138.43 ? C13 2QH 602 A 1 HETATM 14 C C14 2QH . . . C 3 -23.094 -12.846 -10.504 1 138.86 ? C14 2QH 602 A 1 HETATM 15 C C15 2QH . . . C 3 -22.456 -13.132 -9.13 1 138.68 ? C15 2QH 602 A 1 HETATM 16 N N16 2QH . . . C 3 -21.95 -14.52 -9.094 1 138.4 ? N16 2QH 602 A 1 HETATM 17 C C17 2QH . . . C 3 -20.867 -15.011 -8.421 1 138.33 ? C17 2QH 602 A 1 HETATM 18 N N18 2QH . . . C 3 -20.748 -16.303 -8.522 1 138.34 ? N18 2QH 602 A 1 HETATM 19 N N19 2QH . . . C 3 -19.992 -14.222 -7.712 1 138.22 ? N19 2QH 602 A 1 HETATM 20 F F20 2QH . . . C 3 -22.09 -12.742 -11.472 1 139.56 ? F20 2QH 602 A 1 HETATM 21 F F21 2QH . . . C 3 -23.809 -11.645 -10.445 1 138.81 ? F21 2QH 602 A 1 HETATM 22 C C22 2QH . . . C 3 -21.33 -17.56 -10.545 1 138.58 ? C22 2QH 602 A 1 HETATM 23 C C23 2QH . . . C 3 -21.3 -16.953 -11.788 1 139.01 ? C23 2QH 602 A 1 HETATM 24 C C24 2QH . . . C 3 -20.817 -17.639 -12.887 1 139.19 ? C24 2QH 602 A 1 HETATM 25 C C25 2QH . . . C 3 -20.359 -18.937 -12.748 1 139.21 ? C25 2QH 602 A 1 HETATM 26 C C26 2QH . . . C 3 -20.387 -19.552 -11.496 1 137.97 ? C26 2QH 602 A 1 HETATM 27 C C27 2QH . . . C 3 -20.876 -18.854 -10.394 1 138.3 ? C27 2QH 602 A 1 HETATM 28 C C28 2QH . . . C 3 -19.898 -20.944 -11.339 1 136.15 ? C28 2QH 602 A 1 HETATM 29 C C29 2QH . . . C 3 -20.641 -22.019 -11.837 1 135.19 ? C29 2QH 602 A 1 HETATM 30 C C30 2QH . . . C 3 -20.141 -23.298 -11.665 1 134.45 ? C30 2QH 602 A 1 HETATM 31 C C31 2QH . . . C 3 -18.934 -23.471 -11.013 1 133.84 ? C31 2QH 602 A 1 HETATM 32 N N32 2QH . . . C 3 -18.255 -22.437 -10.554 1 133.94 ? N32 2QH 602 A 1 HETATM 33 C C33 2QH . . . C 3 -18.69 -21.202 -10.694 1 135.14 ? C33 2QH 602 A 1 HETATM 34 F F34 2QH . . . C 3 -19.887 -19.607 -13.821 1 140.1 ? F34 2QH 602 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 51 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 34 #