data_4NYE # _model_server_result.job_id xL3gyxrLZcW9dZ1pGaMugA _model_server_result.datetime_utc '2024-11-15 21:46:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nye # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4NYE # _exptl.entry_id 4NYE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.96 _cell.angle_gamma 90 _cell.entry_id 4NYE _cell.length_a 45.931 _cell.length_b 65.111 _cell.length_c 85.837 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NYE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 301 1_555 D O3B ADP . A ADP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc2 C MG MG . A MG 301 1_555 D O2A ADP . A ADP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc3 C MG MG . A MG 301 1_555 J O HOH . A HOH 486 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? metalc ? metalc4 G MG MG . B MG 301 1_555 H O3B ADP . B ADP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc5 G MG MG . B MG 301 1_555 H O2A ADP . B ADP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc6 G MG MG . B MG 301 1_555 K O HOH . B HOH 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4NYE _atom_sites.fract_transf_matrix[1][1] 0.021772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000745 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015358 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011657 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 301 301 MG MG . D 3 ADP A 1 302 302 ADP ADP . E 4 CL A 1 303 303 CL CL . F 5 ACT A 1 304 304 ACT ACT . G 2 MG B 1 301 301 MG MG . H 3 ADP B 1 302 302 ADP ADP . I 5 ACT B 1 303 303 ACT ACT . J 6 HOH A 1 401 401 HOH HOH . J 6 HOH A 2 402 402 HOH HOH . J 6 HOH A 3 403 403 HOH HOH . J 6 HOH A 4 404 404 HOH HOH . J 6 HOH A 5 405 405 HOH HOH . J 6 HOH A 6 406 406 HOH HOH . J 6 HOH A 7 407 407 HOH HOH . J 6 HOH A 8 408 408 HOH HOH . J 6 HOH A 9 409 409 HOH HOH . J 6 HOH A 10 410 410 HOH HOH . J 6 HOH A 11 411 411 HOH HOH . J 6 HOH A 12 412 412 HOH HOH . J 6 HOH A 13 413 413 HOH HOH . J 6 HOH A 14 414 414 HOH HOH . J 6 HOH A 15 415 415 HOH HOH . J 6 HOH A 16 416 416 HOH HOH . J 6 HOH A 17 417 417 HOH HOH . J 6 HOH A 18 418 418 HOH HOH . J 6 HOH A 19 419 419 HOH HOH . J 6 HOH A 20 420 420 HOH HOH . J 6 HOH A 21 421 421 HOH HOH . J 6 HOH A 22 422 422 HOH HOH . J 6 HOH A 23 423 423 HOH HOH . J 6 HOH A 24 424 424 HOH HOH . J 6 HOH A 25 425 425 HOH HOH . J 6 HOH A 26 426 426 HOH HOH . J 6 HOH A 27 427 427 HOH HOH . J 6 HOH A 28 428 428 HOH HOH . J 6 HOH A 29 429 429 HOH HOH . J 6 HOH A 30 430 430 HOH HOH . J 6 HOH A 31 431 431 HOH HOH . J 6 HOH A 32 432 432 HOH HOH . J 6 HOH A 33 433 433 HOH HOH . J 6 HOH A 34 434 434 HOH HOH . J 6 HOH A 35 435 435 HOH HOH . J 6 HOH A 36 436 436 HOH HOH . J 6 HOH A 37 437 437 HOH HOH . J 6 HOH A 38 438 438 HOH HOH . J 6 HOH A 39 439 439 HOH HOH . J 6 HOH A 40 440 440 HOH HOH . J 6 HOH A 41 441 441 HOH HOH . J 6 HOH A 42 442 442 HOH HOH . J 6 HOH A 43 443 443 HOH HOH . J 6 HOH A 44 444 444 HOH HOH . J 6 HOH A 45 445 445 HOH HOH . J 6 HOH A 46 446 446 HOH HOH . J 6 HOH A 47 447 447 HOH HOH . J 6 HOH A 48 448 448 HOH HOH . J 6 HOH A 49 449 449 HOH HOH . J 6 HOH A 50 450 450 HOH HOH . J 6 HOH A 51 451 451 HOH HOH . J 6 HOH A 52 452 452 HOH HOH . J 6 HOH A 53 453 453 HOH HOH . J 6 HOH A 54 454 454 HOH HOH . J 6 HOH A 55 455 455 HOH HOH . J 6 HOH A 56 456 456 HOH HOH . J 6 HOH A 57 457 457 HOH HOH . J 6 HOH A 58 458 458 HOH HOH . J 6 HOH A 59 459 459 HOH HOH . J 6 HOH A 60 460 460 HOH HOH . J 6 HOH A 61 461 461 HOH HOH . J 6 HOH A 62 462 462 HOH HOH . J 6 HOH A 63 463 463 HOH HOH . J 6 HOH A 64 464 464 HOH HOH . J 6 HOH A 65 465 465 HOH HOH . J 6 HOH A 66 466 466 HOH HOH . J 6 HOH A 67 467 467 HOH HOH . J 6 HOH A 68 468 468 HOH HOH . J 6 HOH A 69 469 469 HOH HOH . J 6 HOH A 70 470 470 HOH HOH . J 6 HOH A 71 471 471 HOH HOH . J 6 HOH A 72 472 472 HOH HOH . J 6 HOH A 73 473 473 HOH HOH . J 6 HOH A 74 474 474 HOH HOH . J 6 HOH A 75 475 475 HOH HOH . J 6 HOH A 76 476 476 HOH HOH . J 6 HOH A 77 477 477 HOH HOH . J 6 HOH A 78 478 478 HOH HOH . J 6 HOH A 79 479 479 HOH HOH . J 6 HOH A 80 480 480 HOH HOH . J 6 HOH A 81 481 481 HOH HOH . J 6 HOH A 82 482 482 HOH HOH . J 6 HOH A 83 483 483 HOH HOH . J 6 HOH A 84 484 484 HOH HOH . J 6 HOH A 85 485 485 HOH HOH . J 6 HOH A 86 486 486 HOH HOH . K 6 HOH B 1 401 401 HOH HOH . K 6 HOH B 2 402 402 HOH HOH . K 6 HOH B 3 403 403 HOH HOH . K 6 HOH B 4 404 404 HOH HOH . K 6 HOH B 5 405 405 HOH HOH . K 6 HOH B 6 406 406 HOH HOH . K 6 HOH B 7 407 407 HOH HOH . K 6 HOH B 8 408 408 HOH HOH . K 6 HOH B 9 409 409 HOH HOH . K 6 HOH B 10 410 410 HOH HOH . K 6 HOH B 11 411 411 HOH HOH . K 6 HOH B 12 412 412 HOH HOH . K 6 HOH B 13 413 413 HOH HOH . K 6 HOH B 14 414 414 HOH HOH . K 6 HOH B 15 415 415 HOH HOH . K 6 HOH B 16 416 416 HOH HOH . K 6 HOH B 17 417 417 HOH HOH . K 6 HOH B 18 418 418 HOH HOH . K 6 HOH B 19 419 419 HOH HOH . K 6 HOH B 20 420 420 HOH HOH . K 6 HOH B 21 421 421 HOH HOH . K 6 HOH B 22 422 422 HOH HOH . K 6 HOH B 23 423 423 HOH HOH . K 6 HOH B 24 424 424 HOH HOH . K 6 HOH B 25 425 425 HOH HOH . K 6 HOH B 26 426 426 HOH HOH . K 6 HOH B 27 427 427 HOH HOH . K 6 HOH B 28 428 428 HOH HOH . K 6 HOH B 29 429 429 HOH HOH . K 6 HOH B 30 430 430 HOH HOH . K 6 HOH B 31 431 431 HOH HOH . K 6 HOH B 32 432 432 HOH HOH . K 6 HOH B 33 433 433 HOH HOH . K 6 HOH B 34 434 434 HOH HOH . K 6 HOH B 35 435 435 HOH HOH . K 6 HOH B 36 436 436 HOH HOH . K 6 HOH B 37 437 437 HOH HOH . K 6 HOH B 38 438 438 HOH HOH . K 6 HOH B 39 439 439 HOH HOH . K 6 HOH B 40 440 440 HOH HOH . K 6 HOH B 41 441 441 HOH HOH . K 6 HOH B 42 442 442 HOH HOH . K 6 HOH B 43 443 443 HOH HOH . K 6 HOH B 44 444 444 HOH HOH . K 6 HOH B 45 445 445 HOH HOH . K 6 HOH B 46 446 446 HOH HOH . K 6 HOH B 47 447 447 HOH HOH . K 6 HOH B 48 448 448 HOH HOH . K 6 HOH B 49 449 449 HOH HOH . K 6 HOH B 50 450 450 HOH HOH . K 6 HOH B 51 451 451 HOH HOH . K 6 HOH B 52 452 452 HOH HOH . K 6 HOH B 53 453 453 HOH HOH . K 6 HOH B 54 454 454 HOH HOH . K 6 HOH B 55 455 455 HOH HOH . K 6 HOH B 56 456 456 HOH HOH . K 6 HOH B 57 457 457 HOH HOH . K 6 HOH B 58 458 458 HOH HOH . K 6 HOH B 59 459 459 HOH HOH . K 6 HOH B 60 460 460 HOH HOH . K 6 HOH B 61 461 461 HOH HOH . K 6 HOH B 62 462 462 HOH HOH . K 6 HOH B 63 463 463 HOH HOH . K 6 HOH B 64 464 464 HOH HOH . K 6 HOH B 65 465 465 HOH HOH . K 6 HOH B 66 466 466 HOH HOH . K 6 HOH B 67 467 467 HOH HOH . K 6 HOH B 68 468 468 HOH HOH . K 6 HOH B 69 469 469 HOH HOH . K 6 HOH B 70 470 470 HOH HOH . K 6 HOH B 71 471 471 HOH HOH . K 6 HOH B 72 472 472 HOH HOH . K 6 HOH B 73 473 473 HOH HOH . K 6 HOH B 74 474 474 HOH HOH . K 6 HOH B 75 475 475 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 8.444 _atom_site.Cartn_y -3.874 _atom_site.Cartn_z 7.294 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.06 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #