data_4NZ0 # _model_server_result.job_id YMPCbMRAr06iXMgfylwlrg _model_server_result.datetime_utc '2024-12-03 03:26:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nz0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":503}' # _entry.id 4NZ0 # _exptl.entry_id 4NZ0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 125.86 _cell.angle_gamma 90 _cell.entry_id 4NZ0 _cell.length_a 230.4 _cell.length_b 140.786 _cell.length_c 170.579 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NZ0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 PISA monomeric 1 author_and_software_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 PISA dimeric 2 software_defined_assembly 7 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,P 1 1 B,Q 2 1 C,R 3 1 D,G,H,I,J,S 4 1 E,K,L,M,T 5 1 F,N,O,U 6 1 D,F,G,H,I,J,N,O,S,U 7 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 184 A CYS 184 1_555 A SG CYS 295 A CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 184 B CYS 184 1_555 B SG CYS 295 B CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 C SG CYS 184 C CYS 184 1_555 C SG CYS 295 C CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 E SG CYS 184 E CYS 184 1_555 E SG CYS 295 E CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 F SG CYS 184 F CYS 184 1_555 F SG CYS 295 F CYS 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4NZ0 _atom_sites.fract_transf_matrix[1][1] 0.00434 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003137 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007103 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007233 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GOL D 1 501 3 GOL GOL . H 2 GOL D 1 502 11 GOL GOL . I 2 GOL D 1 503 12 GOL GOL . J 3 CL D 1 504 1 CL CL . K 2 GOL E 1 501 2 GOL GOL . L 2 GOL E 1 502 4 GOL GOL . M 2 GOL E 1 503 9 GOL GOL . N 2 GOL F 1 501 6 GOL GOL . O 2 GOL F 1 502 10 GOL GOL . P 4 HOH A 1 501 9 HOH HOH . P 4 HOH A 2 502 10 HOH HOH . P 4 HOH A 3 503 13 HOH HOH . P 4 HOH A 4 504 20 HOH HOH . P 4 HOH A 5 505 25 HOH HOH . P 4 HOH A 6 506 26 HOH HOH . P 4 HOH A 7 507 33 HOH HOH . P 4 HOH A 8 508 38 HOH HOH . P 4 HOH A 9 509 50 HOH HOH . P 4 HOH A 10 510 52 HOH HOH . P 4 HOH A 11 511 56 HOH HOH . P 4 HOH A 12 512 58 HOH HOH . P 4 HOH A 13 513 87 HOH HOH . P 4 HOH A 14 514 89 HOH HOH . P 4 HOH A 15 515 90 HOH HOH . P 4 HOH A 16 516 93 HOH HOH . P 4 HOH A 17 517 94 HOH HOH . P 4 HOH A 18 518 95 HOH HOH . P 4 HOH A 19 519 97 HOH HOH . P 4 HOH A 20 520 107 HOH HOH . P 4 HOH A 21 521 108 HOH HOH . P 4 HOH A 22 522 114 HOH HOH . P 4 HOH A 23 523 131 HOH HOH . P 4 HOH A 24 524 140 HOH HOH . P 4 HOH A 25 525 145 HOH HOH . P 4 HOH A 26 526 147 HOH HOH . P 4 HOH A 27 527 153 HOH HOH . P 4 HOH A 28 528 160 HOH HOH . P 4 HOH A 29 529 161 HOH HOH . Q 4 HOH B 1 501 1 HOH HOH . Q 4 HOH B 2 502 69 HOH HOH . Q 4 HOH B 3 503 76 HOH HOH . Q 4 HOH B 4 504 111 HOH HOH . Q 4 HOH B 5 505 134 HOH HOH . Q 4 HOH B 6 506 156 HOH HOH . R 4 HOH C 1 501 17 HOH HOH . R 4 HOH C 2 502 39 HOH HOH . R 4 HOH C 3 503 49 HOH HOH . R 4 HOH C 4 504 117 HOH HOH . S 4 HOH D 1 601 22 HOH HOH . S 4 HOH D 2 602 40 HOH HOH . S 4 HOH D 3 603 41 HOH HOH . S 4 HOH D 4 604 91 HOH HOH . S 4 HOH D 5 605 109 HOH HOH . S 4 HOH D 6 606 138 HOH HOH . S 4 HOH D 7 607 162 HOH HOH . S 4 HOH D 8 608 1 HOH HOH . T 4 HOH E 1 601 5 HOH HOH . T 4 HOH E 2 602 18 HOH HOH . T 4 HOH E 3 603 21 HOH HOH . T 4 HOH E 4 604 24 HOH HOH . T 4 HOH E 5 605 27 HOH HOH . T 4 HOH E 6 606 28 HOH HOH . T 4 HOH E 7 607 35 HOH HOH . T 4 HOH E 8 608 36 HOH HOH . T 4 HOH E 9 609 37 HOH HOH . T 4 HOH E 10 610 48 HOH HOH . T 4 HOH E 11 611 67 HOH HOH . T 4 HOH E 12 612 68 HOH HOH . T 4 HOH E 13 613 72 HOH HOH . T 4 HOH E 14 614 74 HOH HOH . T 4 HOH E 15 615 77 HOH HOH . T 4 HOH E 16 616 81 HOH HOH . T 4 HOH E 17 617 84 HOH HOH . T 4 HOH E 18 618 102 HOH HOH . T 4 HOH E 19 619 106 HOH HOH . T 4 HOH E 20 620 118 HOH HOH . T 4 HOH E 21 621 119 HOH HOH . T 4 HOH E 22 622 120 HOH HOH . T 4 HOH E 23 623 136 HOH HOH . T 4 HOH E 24 624 142 HOH HOH . T 4 HOH E 25 625 143 HOH HOH . U 4 HOH F 1 601 19 HOH HOH . U 4 HOH F 2 602 29 HOH HOH . U 4 HOH F 3 603 31 HOH HOH . U 4 HOH F 4 604 51 HOH HOH . U 4 HOH F 5 605 53 HOH HOH . U 4 HOH F 6 606 55 HOH HOH . U 4 HOH F 7 607 57 HOH HOH . U 4 HOH F 8 608 64 HOH HOH . U 4 HOH F 9 609 66 HOH HOH . U 4 HOH F 10 610 103 HOH HOH . U 4 HOH F 11 611 110 HOH HOH . U 4 HOH F 12 612 130 HOH HOH . U 4 HOH F 13 613 137 HOH HOH . U 4 HOH F 14 614 159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . M 2 43.286 47.478 -25.436 1 104.88 ? C1 GOL 503 E 1 HETATM 2 O O1 GOL . . . M 2 43.053 46.979 -24.112 1 104.5 ? O1 GOL 503 E 1 HETATM 3 C C2 GOL . . . M 2 44.357 46.641 -26.131 1 103.89 ? C2 GOL 503 E 1 HETATM 4 O O2 GOL . . . M 2 44.194 45.26 -25.785 1 102 ? O2 GOL 503 E 1 HETATM 5 C C3 GOL . . . M 2 44.256 46.797 -27.646 1 104 ? C3 GOL 503 E 1 HETATM 6 O O3 GOL . . . M 2 45.051 45.795 -28.294 1 102.69 ? O3 GOL 503 E 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 6 #