data_4NZ9
#
_model_server_result.job_id            UdjFLKygRK-34qFYO6wnSA 
_model_server_result.datetime_utc      '2025-07-10 05:51:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nz9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    4NZ9 
#
_exptl.entry_id    4NZ9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              306.401 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-(4-methoxy-3-methylbenzyl)-5,6,7,8-tetrahydro-1H-naphtho[2,3-d]imidazole 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NZ9 
_cell.length_a            80.545 
_cell.length_b            61.034 
_cell.length_c            112.609 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NZ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1 
A,C,D,G 2 1,2 
B,E,F,H 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C20 H22 N2 O' 
_chem_comp.formula_weight    306.401 
_chem_comp.id                1JT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-(4-methoxy-3-methylbenzyl)-5,6,7,8-tetrahydro-1H-naphtho[2,3-d]imidazole 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C23 C13 1JT sing 1 n n 
O21 C22 1JT sing 2 n n 
O21 C14 1JT sing 3 n n 
C13 C14 1JT doub 4 n y 
C13 C12 1JT sing 5 n y 
C14 C15 1JT sing 6 n y 
C12 C11 1JT doub 7 n y 
C15 C16 1JT doub 8 n y 
C11 C16 1JT sing 9 n y 
C11 C10 1JT sing 10 n n 
C10 N9 1JT sing 11 n n 
C17 C18 1JT sing 12 n n 
C17 C2 1JT sing 13 n n 
C4 C2 1JT doub 14 n y 
C4 C5 1JT sing 15 n y 
C18 C19 1JT sing 16 n n 
C2 C1 1JT sing 17 n y 
N9 C5 1JT sing 18 n y 
N9 C8 1JT sing 19 n y 
C5 C6 1JT doub 20 n y 
C19 C20 1JT sing 21 n n 
C8 N7 1JT doub 22 n y 
C1 C20 1JT sing 23 n n 
C1 C3 1JT doub 24 n y 
C6 C3 1JT sing 25 n y 
C6 N7 1JT sing 26 n y 
C3 H1 1JT sing 27 n n 
C4 H2 1JT sing 28 n n 
C8 H3 1JT sing 29 n n 
C10 H4 1JT sing 30 n n 
C10 H5 1JT sing 31 n n 
C12 H6 1JT sing 32 n n 
C15 H7 1JT sing 33 n n 
C16 H8 1JT sing 34 n n 
C17 H9 1JT sing 35 n n 
C17 H10 1JT sing 36 n n 
C18 H11 1JT sing 37 n n 
C18 H12 1JT sing 38 n n 
C19 H13 1JT sing 39 n n 
C19 H14 1JT sing 40 n n 
C20 H15 1JT sing 41 n n 
C20 H16 1JT sing 42 n n 
C22 H17 1JT sing 43 n n 
C22 H18 1JT sing 44 n n 
C22 H19 1JT sing 45 n n 
C23 H20 1JT sing 46 n n 
C23 H21 1JT sing 47 n n 
C23 H22 1JT sing 48 n n 
#
_atom_sites.entry_id                     4NZ9 
_atom_sites.fract_transf_matrix[1][1]    0.012415 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016384 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00888 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 1JT A 1 301 1 1JT LIG . 
D 3 NAP A 1 302 1 NAP NAP . 
E 2 1JT B 1 301 2 1JT LIG . 
F 3 NAP B 1 302 2 NAP NAP . 
G 4 HOH A 1 401 3 HOH HOH . 
G 4 HOH A 2 402 6 HOH HOH . 
G 4 HOH A 3 403 7 HOH HOH . 
G 4 HOH A 4 404 8 HOH HOH . 
G 4 HOH A 5 405 9 HOH HOH . 
G 4 HOH A 6 406 12 HOH HOH . 
G 4 HOH A 7 407 13 HOH HOH . 
G 4 HOH A 8 408 17 HOH HOH . 
G 4 HOH A 9 409 18 HOH HOH . 
G 4 HOH A 10 410 22 HOH HOH . 
G 4 HOH A 11 411 29 HOH HOH . 
G 4 HOH A 12 412 30 HOH HOH . 
G 4 HOH A 13 413 33 HOH HOH . 
G 4 HOH A 14 414 34 HOH HOH . 
G 4 HOH A 15 415 35 HOH HOH . 
G 4 HOH A 16 416 37 HOH HOH . 
G 4 HOH A 17 417 40 HOH HOH . 
G 4 HOH A 18 418 42 HOH HOH . 
G 4 HOH A 19 419 43 HOH HOH . 
G 4 HOH A 20 420 50 HOH HOH . 
G 4 HOH A 21 421 51 HOH HOH . 
G 4 HOH A 22 422 56 HOH HOH . 
G 4 HOH A 23 423 61 HOH HOH . 
G 4 HOH A 24 424 63 HOH HOH . 
G 4 HOH A 25 425 64 HOH HOH . 
G 4 HOH A 26 426 71 HOH HOH . 
G 4 HOH A 27 427 73 HOH HOH . 
G 4 HOH A 28 428 75 HOH HOH . 
G 4 HOH A 29 429 76 HOH HOH . 
G 4 HOH A 30 430 77 HOH HOH . 
G 4 HOH A 31 431 78 HOH HOH . 
G 4 HOH A 32 432 80 HOH HOH . 
G 4 HOH A 33 433 81 HOH HOH . 
G 4 HOH A 34 434 86 HOH HOH . 
G 4 HOH A 35 435 90 HOH HOH . 
G 4 HOH A 36 436 92 HOH HOH . 
G 4 HOH A 37 437 96 HOH HOH . 
G 4 HOH A 38 438 97 HOH HOH . 
G 4 HOH A 39 439 98 HOH HOH . 
G 4 HOH A 40 440 101 HOH HOH . 
G 4 HOH A 41 441 103 HOH HOH . 
G 4 HOH A 42 442 109 HOH HOH . 
G 4 HOH A 43 443 112 HOH HOH . 
G 4 HOH A 44 444 113 HOH HOH . 
G 4 HOH A 45 445 114 HOH HOH . 
G 4 HOH A 46 446 117 HOH HOH . 
G 4 HOH A 47 447 118 HOH HOH . 
G 4 HOH A 48 448 120 HOH HOH . 
G 4 HOH A 49 449 124 HOH HOH . 
G 4 HOH A 50 450 125 HOH HOH . 
G 4 HOH A 51 451 126 HOH HOH . 
G 4 HOH A 52 452 129 HOH HOH . 
G 4 HOH A 53 453 131 HOH HOH . 
G 4 HOH A 54 454 135 HOH HOH . 
G 4 HOH A 55 455 136 HOH HOH . 
G 4 HOH A 56 456 137 HOH HOH . 
G 4 HOH A 57 457 140 HOH HOH . 
G 4 HOH A 58 458 144 HOH HOH . 
G 4 HOH A 59 459 151 HOH HOH . 
H 4 HOH B 1 401 1 HOH HOH . 
H 4 HOH B 2 402 2 HOH HOH . 
H 4 HOH B 3 403 4 HOH HOH . 
H 4 HOH B 4 404 5 HOH HOH . 
H 4 HOH B 5 405 10 HOH HOH . 
H 4 HOH B 6 406 11 HOH HOH . 
H 4 HOH B 7 407 14 HOH HOH . 
H 4 HOH B 8 408 15 HOH HOH . 
H 4 HOH B 9 409 16 HOH HOH . 
H 4 HOH B 10 410 19 HOH HOH . 
H 4 HOH B 11 411 20 HOH HOH . 
H 4 HOH B 12 412 21 HOH HOH . 
H 4 HOH B 13 413 23 HOH HOH . 
H 4 HOH B 14 414 24 HOH HOH . 
H 4 HOH B 15 415 25 HOH HOH . 
H 4 HOH B 16 416 26 HOH HOH . 
H 4 HOH B 17 417 28 HOH HOH . 
H 4 HOH B 18 418 31 HOH HOH . 
H 4 HOH B 19 419 32 HOH HOH . 
H 4 HOH B 20 420 36 HOH HOH . 
H 4 HOH B 21 421 38 HOH HOH . 
H 4 HOH B 22 422 41 HOH HOH . 
H 4 HOH B 23 423 44 HOH HOH . 
H 4 HOH B 24 424 46 HOH HOH . 
H 4 HOH B 25 425 47 HOH HOH . 
H 4 HOH B 26 426 49 HOH HOH . 
H 4 HOH B 27 427 52 HOH HOH . 
H 4 HOH B 28 428 54 HOH HOH . 
H 4 HOH B 29 429 55 HOH HOH . 
H 4 HOH B 30 430 57 HOH HOH . 
H 4 HOH B 31 431 58 HOH HOH . 
H 4 HOH B 32 432 59 HOH HOH . 
H 4 HOH B 33 433 60 HOH HOH . 
H 4 HOH B 34 434 65 HOH HOH . 
H 4 HOH B 35 435 66 HOH HOH . 
H 4 HOH B 36 436 67 HOH HOH . 
H 4 HOH B 37 437 68 HOH HOH . 
H 4 HOH B 38 438 69 HOH HOH . 
H 4 HOH B 39 439 70 HOH HOH . 
H 4 HOH B 40 440 74 HOH HOH . 
H 4 HOH B 41 441 79 HOH HOH . 
H 4 HOH B 42 442 82 HOH HOH . 
H 4 HOH B 43 443 83 HOH HOH . 
H 4 HOH B 44 444 87 HOH HOH . 
H 4 HOH B 45 445 88 HOH HOH . 
H 4 HOH B 46 446 89 HOH HOH . 
H 4 HOH B 47 447 91 HOH HOH . 
H 4 HOH B 48 448 93 HOH HOH . 
H 4 HOH B 49 449 94 HOH HOH . 
H 4 HOH B 50 450 95 HOH HOH . 
H 4 HOH B 51 451 99 HOH HOH . 
H 4 HOH B 52 452 102 HOH HOH . 
H 4 HOH B 53 453 104 HOH HOH . 
H 4 HOH B 54 454 105 HOH HOH . 
H 4 HOH B 55 455 106 HOH HOH . 
H 4 HOH B 56 456 108 HOH HOH . 
H 4 HOH B 57 457 110 HOH HOH . 
H 4 HOH B 58 458 111 HOH HOH . 
H 4 HOH B 59 459 115 HOH HOH . 
H 4 HOH B 60 460 119 HOH HOH . 
H 4 HOH B 61 461 121 HOH HOH . 
H 4 HOH B 62 462 122 HOH HOH . 
H 4 HOH B 63 463 130 HOH HOH . 
H 4 HOH B 64 464 132 HOH HOH . 
H 4 HOH B 65 465 134 HOH HOH . 
H 4 HOH B 66 466 138 HOH HOH . 
H 4 HOH B 67 467 142 HOH HOH . 
H 4 HOH B 68 468 146 HOH HOH . 
H 4 HOH B 69 469 147 HOH HOH . 
H 4 HOH B 70 470 148 HOH HOH . 
H 4 HOH B 71 471 158 HOH HOH . 
H 4 HOH B 72 472 159 HOH HOH . 
H 4 HOH B 73 473 160 HOH HOH . 
H 4 HOH B 74 474 162 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 1JT . . . C 2 0.354 15.006 10.153 1 34.08 ? C1 1JT 301 A 1 
HETATM 2 C C2 1JT . . . C 2 -0.402 16.191 10.315 1 34.07 ? C2 1JT 301 A 1 
HETATM 3 C C3 1JT . . . C 2 0.909 14.378 11.273 1 34.4 ? C3 1JT 301 A 1 
HETATM 4 C C4 1JT . . . C 2 -0.591 16.717 11.595 1 34.57 ? C4 1JT 301 A 1 
HETATM 5 C C5 1JT . . . C 2 -0.029 16.08 12.688 1 35.2 ? C5 1JT 301 A 1 
HETATM 6 C C6 1JT . . . C 2 0.721 14.916 12.544 1 34.74 ? C6 1JT 301 A 1 
HETATM 7 N N7 1JT . . . C 2 1.179 14.481 13.785 1 34.52 ? N7 1JT 301 A 1 
HETATM 8 C C8 1JT . . . C 2 0.711 15.366 14.63 1 34.96 ? C8 1JT 301 A 1 
HETATM 9 N N9 1JT . . . C 2 -0.024 16.352 14.048 1 36.19 ? N9 1JT 301 A 1 
HETATM 10 C C10 1JT . . . C 2 -0.689 17.475 14.714 1 37.79 ? C10 1JT 301 A 1 
HETATM 11 C C11 1JT . . . C 2 -2.04 17.103 15.279 1 40.37 ? C11 1JT 301 A 1 
HETATM 12 C C12 1JT . . . C 2 -3.099 16.801 14.43 1 41.64 ? C12 1JT 301 A 1 
HETATM 13 C C13 1JT . . . C 2 -4.362 16.468 14.908 1 42.19 ? C13 1JT 301 A 1 
HETATM 14 C C14 1JT . . . C 2 -4.551 16.449 16.291 1 43 ? C14 1JT 301 A 1 
HETATM 15 C C15 1JT . . . C 2 -3.508 16.746 17.161 1 42.04 ? C15 1JT 301 A 1 
HETATM 16 C C16 1JT . . . C 2 -2.263 17.068 16.647 1 41.04 ? C16 1JT 301 A 1 
HETATM 17 C C17 1JT . . . C 2 -0.994 16.912 9.128 1 34.2 ? C17 1JT 301 A 1 
HETATM 18 C C18 1JT . . . C 2 -0.93 16.13 7.821 1 33.77 ? C18 1JT 301 A 1 
HETATM 19 C C19 1JT . . . C 2 0.388 15.399 7.662 1 33.48 ? C19 1JT 301 A 1 
HETATM 20 C C20 1JT . . . C 2 0.576 14.402 8.788 1 33.71 ? C20 1JT 301 A 1 
HETATM 21 O O21 1JT . . . C 2 -5.809 16.101 16.704 1 44.41 ? O21 1JT 301 A 1 
HETATM 22 C C22 1JT . . . C 2 -6.649 17.135 17.22 1 44.77 ? C22 1JT 301 A 1 
HETATM 23 C C23 1JT . . . C 2 -5.474 16.117 13.953 1 42.25 ? C23 1JT 301 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           23 
#