data_4NZ9
#
_model_server_result.job_id            8WKRyXNJlI44FJ8jJUhZPQ 
_model_server_result.datetime_utc      '2025-07-10 19:54:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4nz9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":302}' 
#
_entry.id    4NZ9 
#
_exptl.entry_id    4NZ9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4NZ9 
_cell.length_a            80.545 
_cell.length_b            61.034 
_cell.length_c            112.609 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4NZ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1 
A,C,D,G 2 1,2 
B,E,F,H 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 272 n n 
PA O2A NAP sing 273 n n 
PA O5B NAP sing 274 n n 
PA O3 NAP sing 275 n n 
O2A HOA2 NAP sing 276 n n 
O5B C5B NAP sing 277 n n 
C5B C4B NAP sing 278 n n 
C5B H51A NAP sing 279 n n 
C5B H52A NAP sing 280 n n 
C4B O4B NAP sing 281 n n 
C4B C3B NAP sing 282 n n 
C4B H4B NAP sing 283 n n 
O4B C1B NAP sing 284 n n 
C3B O3B NAP sing 285 n n 
C3B C2B NAP sing 286 n n 
C3B H3B NAP sing 287 n n 
O3B HO3A NAP sing 288 n n 
C2B O2B NAP sing 289 n n 
C2B C1B NAP sing 290 n n 
C2B H2B NAP sing 291 n n 
O2B P2B NAP sing 292 n n 
C1B N9A NAP sing 293 n n 
C1B H1B NAP sing 294 n n 
N9A C8A NAP sing 295 n y 
N9A C4A NAP sing 296 n y 
C8A N7A NAP doub 297 n y 
C8A H8A NAP sing 298 n n 
N7A C5A NAP sing 299 n y 
C5A C6A NAP sing 300 n y 
C5A C4A NAP doub 301 n y 
C6A N6A NAP sing 302 n n 
C6A N1A NAP doub 303 n y 
N6A H61A NAP sing 304 n n 
N6A H62A NAP sing 305 n n 
N1A C2A NAP sing 306 n y 
C2A N3A NAP doub 307 n y 
C2A H2A NAP sing 308 n n 
N3A C4A NAP sing 309 n y 
O3 PN NAP sing 310 n n 
PN O1N NAP doub 311 n n 
PN O2N NAP sing 312 n n 
PN O5D NAP sing 313 n n 
O5D C5D NAP sing 314 n n 
C5D C4D NAP sing 315 n n 
C5D H51N NAP sing 316 n n 
C5D H52N NAP sing 317 n n 
C4D O4D NAP sing 318 n n 
C4D C3D NAP sing 319 n n 
C4D H4D NAP sing 320 n n 
O4D C1D NAP sing 321 n n 
C3D O3D NAP sing 322 n n 
C3D C2D NAP sing 323 n n 
C3D H3D NAP sing 324 n n 
O3D HO3N NAP sing 325 n n 
C2D O2D NAP sing 326 n n 
C2D C1D NAP sing 327 n n 
C2D H2D NAP sing 328 n n 
O2D HO2N NAP sing 329 n n 
C1D N1N NAP sing 330 n n 
C1D H1D NAP sing 331 n n 
N1N C2N NAP sing 332 n y 
N1N C6N NAP doub 333 n y 
C2N C3N NAP doub 334 n y 
C2N H2N NAP sing 335 n n 
C3N C7N NAP sing 336 n n 
C3N C4N NAP sing 337 n y 
C7N O7N NAP doub 338 n n 
C7N N7N NAP sing 339 n n 
N7N H71N NAP sing 340 n n 
N7N H72N NAP sing 341 n n 
C4N C5N NAP doub 342 n y 
C4N H4N NAP sing 343 n n 
C5N C6N NAP sing 344 n y 
C5N H5N NAP sing 345 n n 
C6N H6N NAP sing 346 n n 
P2B O1X NAP doub 347 n n 
P2B O2X NAP sing 348 n n 
P2B O3X NAP sing 349 n n 
O2X HOP2 NAP sing 350 n n 
O3X HOP3 NAP sing 351 n n 
#
_atom_sites.entry_id                     4NZ9 
_atom_sites.fract_transf_matrix[1][1]    0.012415 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016384 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00888 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 1JT A 1 301 1 1JT LIG . 
D 3 NAP A 1 302 1 NAP NAP . 
E 2 1JT B 1 301 2 1JT LIG . 
F 3 NAP B 1 302 2 NAP NAP . 
G 4 HOH A 1 401 3 HOH HOH . 
G 4 HOH A 2 402 6 HOH HOH . 
G 4 HOH A 3 403 7 HOH HOH . 
G 4 HOH A 4 404 8 HOH HOH . 
G 4 HOH A 5 405 9 HOH HOH . 
G 4 HOH A 6 406 12 HOH HOH . 
G 4 HOH A 7 407 13 HOH HOH . 
G 4 HOH A 8 408 17 HOH HOH . 
G 4 HOH A 9 409 18 HOH HOH . 
G 4 HOH A 10 410 22 HOH HOH . 
G 4 HOH A 11 411 29 HOH HOH . 
G 4 HOH A 12 412 30 HOH HOH . 
G 4 HOH A 13 413 33 HOH HOH . 
G 4 HOH A 14 414 34 HOH HOH . 
G 4 HOH A 15 415 35 HOH HOH . 
G 4 HOH A 16 416 37 HOH HOH . 
G 4 HOH A 17 417 40 HOH HOH . 
G 4 HOH A 18 418 42 HOH HOH . 
G 4 HOH A 19 419 43 HOH HOH . 
G 4 HOH A 20 420 50 HOH HOH . 
G 4 HOH A 21 421 51 HOH HOH . 
G 4 HOH A 22 422 56 HOH HOH . 
G 4 HOH A 23 423 61 HOH HOH . 
G 4 HOH A 24 424 63 HOH HOH . 
G 4 HOH A 25 425 64 HOH HOH . 
G 4 HOH A 26 426 71 HOH HOH . 
G 4 HOH A 27 427 73 HOH HOH . 
G 4 HOH A 28 428 75 HOH HOH . 
G 4 HOH A 29 429 76 HOH HOH . 
G 4 HOH A 30 430 77 HOH HOH . 
G 4 HOH A 31 431 78 HOH HOH . 
G 4 HOH A 32 432 80 HOH HOH . 
G 4 HOH A 33 433 81 HOH HOH . 
G 4 HOH A 34 434 86 HOH HOH . 
G 4 HOH A 35 435 90 HOH HOH . 
G 4 HOH A 36 436 92 HOH HOH . 
G 4 HOH A 37 437 96 HOH HOH . 
G 4 HOH A 38 438 97 HOH HOH . 
G 4 HOH A 39 439 98 HOH HOH . 
G 4 HOH A 40 440 101 HOH HOH . 
G 4 HOH A 41 441 103 HOH HOH . 
G 4 HOH A 42 442 109 HOH HOH . 
G 4 HOH A 43 443 112 HOH HOH . 
G 4 HOH A 44 444 113 HOH HOH . 
G 4 HOH A 45 445 114 HOH HOH . 
G 4 HOH A 46 446 117 HOH HOH . 
G 4 HOH A 47 447 118 HOH HOH . 
G 4 HOH A 48 448 120 HOH HOH . 
G 4 HOH A 49 449 124 HOH HOH . 
G 4 HOH A 50 450 125 HOH HOH . 
G 4 HOH A 51 451 126 HOH HOH . 
G 4 HOH A 52 452 129 HOH HOH . 
G 4 HOH A 53 453 131 HOH HOH . 
G 4 HOH A 54 454 135 HOH HOH . 
G 4 HOH A 55 455 136 HOH HOH . 
G 4 HOH A 56 456 137 HOH HOH . 
G 4 HOH A 57 457 140 HOH HOH . 
G 4 HOH A 58 458 144 HOH HOH . 
G 4 HOH A 59 459 151 HOH HOH . 
H 4 HOH B 1 401 1 HOH HOH . 
H 4 HOH B 2 402 2 HOH HOH . 
H 4 HOH B 3 403 4 HOH HOH . 
H 4 HOH B 4 404 5 HOH HOH . 
H 4 HOH B 5 405 10 HOH HOH . 
H 4 HOH B 6 406 11 HOH HOH . 
H 4 HOH B 7 407 14 HOH HOH . 
H 4 HOH B 8 408 15 HOH HOH . 
H 4 HOH B 9 409 16 HOH HOH . 
H 4 HOH B 10 410 19 HOH HOH . 
H 4 HOH B 11 411 20 HOH HOH . 
H 4 HOH B 12 412 21 HOH HOH . 
H 4 HOH B 13 413 23 HOH HOH . 
H 4 HOH B 14 414 24 HOH HOH . 
H 4 HOH B 15 415 25 HOH HOH . 
H 4 HOH B 16 416 26 HOH HOH . 
H 4 HOH B 17 417 28 HOH HOH . 
H 4 HOH B 18 418 31 HOH HOH . 
H 4 HOH B 19 419 32 HOH HOH . 
H 4 HOH B 20 420 36 HOH HOH . 
H 4 HOH B 21 421 38 HOH HOH . 
H 4 HOH B 22 422 41 HOH HOH . 
H 4 HOH B 23 423 44 HOH HOH . 
H 4 HOH B 24 424 46 HOH HOH . 
H 4 HOH B 25 425 47 HOH HOH . 
H 4 HOH B 26 426 49 HOH HOH . 
H 4 HOH B 27 427 52 HOH HOH . 
H 4 HOH B 28 428 54 HOH HOH . 
H 4 HOH B 29 429 55 HOH HOH . 
H 4 HOH B 30 430 57 HOH HOH . 
H 4 HOH B 31 431 58 HOH HOH . 
H 4 HOH B 32 432 59 HOH HOH . 
H 4 HOH B 33 433 60 HOH HOH . 
H 4 HOH B 34 434 65 HOH HOH . 
H 4 HOH B 35 435 66 HOH HOH . 
H 4 HOH B 36 436 67 HOH HOH . 
H 4 HOH B 37 437 68 HOH HOH . 
H 4 HOH B 38 438 69 HOH HOH . 
H 4 HOH B 39 439 70 HOH HOH . 
H 4 HOH B 40 440 74 HOH HOH . 
H 4 HOH B 41 441 79 HOH HOH . 
H 4 HOH B 42 442 82 HOH HOH . 
H 4 HOH B 43 443 83 HOH HOH . 
H 4 HOH B 44 444 87 HOH HOH . 
H 4 HOH B 45 445 88 HOH HOH . 
H 4 HOH B 46 446 89 HOH HOH . 
H 4 HOH B 47 447 91 HOH HOH . 
H 4 HOH B 48 448 93 HOH HOH . 
H 4 HOH B 49 449 94 HOH HOH . 
H 4 HOH B 50 450 95 HOH HOH . 
H 4 HOH B 51 451 99 HOH HOH . 
H 4 HOH B 52 452 102 HOH HOH . 
H 4 HOH B 53 453 104 HOH HOH . 
H 4 HOH B 54 454 105 HOH HOH . 
H 4 HOH B 55 455 106 HOH HOH . 
H 4 HOH B 56 456 108 HOH HOH . 
H 4 HOH B 57 457 110 HOH HOH . 
H 4 HOH B 58 458 111 HOH HOH . 
H 4 HOH B 59 459 115 HOH HOH . 
H 4 HOH B 60 460 119 HOH HOH . 
H 4 HOH B 61 461 121 HOH HOH . 
H 4 HOH B 62 462 122 HOH HOH . 
H 4 HOH B 63 463 130 HOH HOH . 
H 4 HOH B 64 464 132 HOH HOH . 
H 4 HOH B 65 465 134 HOH HOH . 
H 4 HOH B 66 466 138 HOH HOH . 
H 4 HOH B 67 467 142 HOH HOH . 
H 4 HOH B 68 468 146 HOH HOH . 
H 4 HOH B 69 469 147 HOH HOH . 
H 4 HOH B 70 470 148 HOH HOH . 
H 4 HOH B 71 471 158 HOH HOH . 
H 4 HOH B 72 472 159 HOH HOH . 
H 4 HOH B 73 473 160 HOH HOH . 
H 4 HOH B 74 474 162 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . D 3 6.664 19.243 9.47 1 18.99 ? PA NAP 302 A 1 
HETATM 2 O O1A NAP . . . D 3 5.681 19.454 8.348 1 19.95 ? O1A NAP 302 A 1 
HETATM 3 O O2A NAP . . . D 3 7.774 20.233 9.683 1 19.11 ? O2A NAP 302 A 1 
HETATM 4 O O5B NAP . . . D 3 7.36 17.798 9.328 1 20.4 ? O5B NAP 302 A 1 
HETATM 5 C C5B NAP . . . D 3 6.927 16.823 8.374 1 21.62 ? C5B NAP 302 A 1 
HETATM 6 C C4B NAP . . . D 3 8.098 16.47 7.463 1 22.79 ? C4B NAP 302 A 1 
HETATM 7 O O4B NAP . . . D 3 7.885 15.212 6.797 1 23.09 ? O4B NAP 302 A 1 
HETATM 8 C C3B NAP . . . D 3 8.292 17.521 6.378 1 23.44 ? C3B NAP 302 A 1 
HETATM 9 O O3B NAP . . . D 3 9.636 18.007 6.434 1 23.17 ? O3B NAP 302 A 1 
HETATM 10 C C2B NAP . . . D 3 8.052 16.765 5.085 1 23.87 ? C2B NAP 302 A 1 
HETATM 11 O O2B NAP . . . D 3 8.876 17.213 4.017 1 25.43 ? O2B NAP 302 A 1 
HETATM 12 C C1B NAP . . . D 3 8.378 15.335 5.46 1 23.52 ? C1B NAP 302 A 1 
HETATM 13 N N9A NAP . . . D 3 7.776 14.392 4.481 1 23.52 ? N9A NAP 302 A 1 
HETATM 14 C C8A NAP . . . D 3 6.466 14.194 4.233 1 23.06 ? C8A NAP 302 A 1 
HETATM 15 N N7A NAP . . . D 3 6.293 13.264 3.261 1 23.08 ? N7A NAP 302 A 1 
HETATM 16 C C5A NAP . . . D 3 7.511 12.848 2.87 1 23.38 ? C5A NAP 302 A 1 
HETATM 17 C C6A NAP . . . D 3 8.06 11.877 1.888 1 23.3 ? C6A NAP 302 A 1 
HETATM 18 N N6A NAP . . . D 3 7.254 11.137 1.092 1 23.82 ? N6A NAP 302 A 1 
HETATM 19 N N1A NAP . . . D 3 9.404 11.764 1.8 1 23.36 ? N1A NAP 302 A 1 
HETATM 20 C C2A NAP . . . D 3 10.24 12.485 2.574 1 23.21 ? C2A NAP 302 A 1 
HETATM 21 N N3A NAP . . . D 3 9.812 13.377 3.484 1 23.17 ? N3A NAP 302 A 1 
HETATM 22 C C4A NAP . . . D 3 8.486 13.601 3.675 1 23.33 ? C4A NAP 302 A 1 
HETATM 23 O O3 NAP . . . D 3 5.773 19.133 10.805 1 19.27 ? O3 NAP 302 A 1 
HETATM 24 P PN NAP . . . D 3 6.333 18.543 12.194 1 18.76 ? PN NAP 302 A 1 
HETATM 25 O O1N NAP . . . D 3 5.244 18.738 13.215 1 19.4 ? O1N NAP 302 A 1 
HETATM 26 O O2N NAP . . . D 3 7.709 19.106 12.438 1 18.32 ? O2N NAP 302 A 1 
HETATM 27 O O5D NAP . . . D 3 6.409 16.96 11.902 1 19.03 ? O5D NAP 302 A 1 
HETATM 28 C C5D NAP . . . D 3 7.503 16.165 12.353 1 19.32 ? C5D NAP 302 A 1 
HETATM 29 C C4D NAP . . . D 3 7.049 14.862 13.011 1 19.34 ? C4D NAP 302 A 1 
HETATM 30 O O4D NAP . . . D 3 6.577 15.106 14.336 1 19.38 ? O4D NAP 302 A 1 
HETATM 31 C C3D NAP . . . D 3 5.914 14.163 12.278 1 19.66 ? C3D NAP 302 A 1 
HETATM 32 O O3D NAP . . . D 3 6.225 12.768 12.177 1 19.82 ? O3D NAP 302 A 1 
HETATM 33 C C2D NAP . . . D 3 4.702 14.32 13.168 1 19.53 ? C2D NAP 302 A 1 
HETATM 34 O O2D NAP . . . D 3 3.842 13.189 13.03 1 19.89 ? O2D NAP 302 A 1 
HETATM 35 C C1D NAP . . . D 3 5.345 14.404 14.544 1 19.4 ? C1D NAP 302 A 1 
HETATM 36 N N1N NAP . . . D 3 4.556 15.098 15.563 1 19.2 ? N1N NAP 302 A 1 
HETATM 37 C C2N NAP . . . D 3 4.114 16.352 15.363 1 19.31 ? C2N NAP 302 A 1 
HETATM 38 C C3N NAP . . . D 3 3.382 17.002 16.355 1 19.37 ? C3N NAP 302 A 1 
HETATM 39 C C7N NAP . . . D 3 2.886 18.399 16.134 1 19.33 ? C7N NAP 302 A 1 
HETATM 40 O O7N NAP . . . D 3 2.088 18.878 16.92 1 19.51 ? O7N NAP 302 A 1 
HETATM 41 N N7N NAP . . . D 3 3.337 19.084 15.089 1 19.26 ? N7N NAP 302 A 1 
HETATM 42 C C4N NAP . . . D 3 3.113 16.347 17.558 1 19.35 ? C4N NAP 302 A 1 
HETATM 43 C C5N NAP . . . D 3 3.59 15.055 17.738 1 19.16 ? C5N NAP 302 A 1 
HETATM 44 C C6N NAP . . . D 3 4.315 14.455 16.715 1 19.12 ? C6N NAP 302 A 1 
HETATM 45 P P2B NAP . . . D 3 8.249 18.067 2.799 1 27.31 ? P2B NAP 302 A 1 
HETATM 46 O O1X NAP . . . D 3 7.435 17.088 1.99 1 26.99 ? O1X NAP 302 A 1 
HETATM 47 O O2X NAP . . . D 3 9.484 18.573 2.094 1 28.02 ? O2X NAP 302 A 1 
HETATM 48 O O3X NAP . . . D 3 7.414 19.145 3.458 1 27.07 ? O3X NAP 302 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           48 
#