data_4NZH # _model_server_result.job_id THuCQSkAsU8PXmi-Dczpvw _model_server_result.datetime_utc '2024-11-30 01:20:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4nzh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 4NZH # _exptl.entry_id 4NZH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 132.161 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-ornithine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4NZH _cell.length_a 77.905 _cell.length_b 84.083 _cell.length_c 144.902 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4NZH _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -77.905 -84.083 0 3 'crystal symmetry operation' 3_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -77.905 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -84.083 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H12 N2 O2' _chem_comp.formula_weight 132.161 _chem_comp.id ORN _chem_comp.mon_nstd_flag n _chem_comp.name L-ornithine _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ORN sing 341 n n N H ORN sing 342 n n N H2 ORN sing 343 n n CA CB ORN sing 344 n n CA C ORN sing 345 n n CA HA ORN sing 346 n n CB CG ORN sing 347 n n CB HB2 ORN sing 348 n n CB HB3 ORN sing 349 n n CG CD ORN sing 350 n n CG HG2 ORN sing 351 n n CG HG3 ORN sing 352 n n CD NE ORN sing 353 n n CD HD2 ORN sing 354 n n CD HD3 ORN sing 355 n n NE HE1 ORN sing 356 n n NE HE2 ORN sing 357 n n C O ORN doub 358 n n C OXT ORN sing 359 n n OXT HXT ORN sing 360 n n # _atom_sites.entry_id 4NZH _atom_sites.fract_transf_matrix[1][1] 0.012836 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011893 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006901 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 1 FAD FAD . C 3 ORN A 1 602 2 ORN ORN . D 4 GOL A 1 603 1 GOL GOL . E 4 GOL A 1 604 2 GOL GOL . F 4 GOL A 1 605 3 GOL GOL . G 4 GOL A 1 606 4 GOL GOL . H 5 HOH A 1 701 1 HOH HOH . H 5 HOH A 2 702 2 HOH HOH . H 5 HOH A 3 703 3 HOH HOH . H 5 HOH A 4 704 4 HOH HOH . H 5 HOH A 5 705 5 HOH HOH . H 5 HOH A 6 706 6 HOH HOH . H 5 HOH A 7 707 7 HOH HOH . H 5 HOH A 8 708 8 HOH HOH . H 5 HOH A 9 709 9 HOH HOH . H 5 HOH A 10 710 10 HOH HOH . H 5 HOH A 11 711 11 HOH HOH . H 5 HOH A 12 712 12 HOH HOH . H 5 HOH A 13 713 13 HOH HOH . H 5 HOH A 14 714 14 HOH HOH . H 5 HOH A 15 715 15 HOH HOH . H 5 HOH A 16 716 16 HOH HOH . H 5 HOH A 17 717 17 HOH HOH . H 5 HOH A 18 718 18 HOH HOH . H 5 HOH A 19 719 19 HOH HOH . H 5 HOH A 20 720 20 HOH HOH . H 5 HOH A 21 721 21 HOH HOH . H 5 HOH A 22 722 22 HOH HOH . H 5 HOH A 23 723 23 HOH HOH . H 5 HOH A 24 724 24 HOH HOH . H 5 HOH A 25 725 25 HOH HOH . H 5 HOH A 26 726 26 HOH HOH . H 5 HOH A 27 727 27 HOH HOH . H 5 HOH A 28 728 28 HOH HOH . H 5 HOH A 29 729 29 HOH HOH . H 5 HOH A 30 730 30 HOH HOH . H 5 HOH A 31 731 31 HOH HOH . H 5 HOH A 32 732 32 HOH HOH . H 5 HOH A 33 733 33 HOH HOH . H 5 HOH A 34 734 34 HOH HOH . H 5 HOH A 35 735 35 HOH HOH . H 5 HOH A 36 736 36 HOH HOH . H 5 HOH A 37 737 37 HOH HOH . H 5 HOH A 38 738 38 HOH HOH . H 5 HOH A 39 739 39 HOH HOH . H 5 HOH A 40 740 40 HOH HOH . H 5 HOH A 41 741 41 HOH HOH . H 5 HOH A 42 742 42 HOH HOH . H 5 HOH A 43 743 43 HOH HOH . H 5 HOH A 44 744 44 HOH HOH . H 5 HOH A 45 745 45 HOH HOH . H 5 HOH A 46 746 46 HOH HOH . H 5 HOH A 47 747 47 HOH HOH . H 5 HOH A 48 748 48 HOH HOH . H 5 HOH A 49 749 49 HOH HOH . H 5 HOH A 50 750 50 HOH HOH . H 5 HOH A 51 751 51 HOH HOH . H 5 HOH A 52 752 52 HOH HOH . H 5 HOH A 53 753 53 HOH HOH . H 5 HOH A 54 754 54 HOH HOH . H 5 HOH A 55 755 55 HOH HOH . H 5 HOH A 56 756 56 HOH HOH . H 5 HOH A 57 757 57 HOH HOH . H 5 HOH A 58 758 58 HOH HOH . H 5 HOH A 59 759 59 HOH HOH . H 5 HOH A 60 760 60 HOH HOH . H 5 HOH A 61 761 61 HOH HOH . H 5 HOH A 62 762 62 HOH HOH . H 5 HOH A 63 763 63 HOH HOH . H 5 HOH A 64 764 64 HOH HOH . H 5 HOH A 65 765 65 HOH HOH . H 5 HOH A 66 766 66 HOH HOH . H 5 HOH A 67 767 67 HOH HOH . H 5 HOH A 68 768 68 HOH HOH . H 5 HOH A 69 769 69 HOH HOH . H 5 HOH A 70 770 70 HOH HOH . H 5 HOH A 71 771 71 HOH HOH . H 5 HOH A 72 772 72 HOH HOH . H 5 HOH A 73 773 73 HOH HOH . H 5 HOH A 74 774 74 HOH HOH . H 5 HOH A 75 775 76 HOH HOH . H 5 HOH A 76 776 77 HOH HOH . H 5 HOH A 77 777 78 HOH HOH . H 5 HOH A 78 778 79 HOH HOH . H 5 HOH A 79 779 80 HOH HOH . H 5 HOH A 80 780 81 HOH HOH . H 5 HOH A 81 781 82 HOH HOH . H 5 HOH A 82 782 83 HOH HOH . H 5 HOH A 83 783 84 HOH HOH . H 5 HOH A 84 784 85 HOH HOH . H 5 HOH A 85 785 86 HOH HOH . H 5 HOH A 86 786 87 HOH HOH . H 5 HOH A 87 787 88 HOH HOH . H 5 HOH A 88 788 89 HOH HOH . H 5 HOH A 89 789 90 HOH HOH . H 5 HOH A 90 790 91 HOH HOH . H 5 HOH A 91 791 92 HOH HOH . H 5 HOH A 92 792 93 HOH HOH . H 5 HOH A 93 793 94 HOH HOH . H 5 HOH A 94 794 95 HOH HOH . H 5 HOH A 95 795 96 HOH HOH . H 5 HOH A 96 796 97 HOH HOH . H 5 HOH A 97 797 98 HOH HOH . H 5 HOH A 98 798 99 HOH HOH . H 5 HOH A 99 799 100 HOH HOH . H 5 HOH A 100 800 101 HOH HOH . H 5 HOH A 101 801 102 HOH HOH . H 5 HOH A 102 802 103 HOH HOH . H 5 HOH A 103 803 104 HOH HOH . H 5 HOH A 104 804 105 HOH HOH . H 5 HOH A 105 805 106 HOH HOH . H 5 HOH A 106 806 107 HOH HOH . H 5 HOH A 107 807 108 HOH HOH . H 5 HOH A 108 808 109 HOH HOH . H 5 HOH A 109 809 110 HOH HOH . H 5 HOH A 110 810 111 HOH HOH . H 5 HOH A 111 811 112 HOH HOH . H 5 HOH A 112 812 113 HOH HOH . H 5 HOH A 113 813 114 HOH HOH . H 5 HOH A 114 814 115 HOH HOH . H 5 HOH A 115 815 116 HOH HOH . H 5 HOH A 116 816 117 HOH HOH . H 5 HOH A 117 817 118 HOH HOH . H 5 HOH A 118 818 119 HOH HOH . H 5 HOH A 119 819 120 HOH HOH . H 5 HOH A 120 820 121 HOH HOH . H 5 HOH A 121 821 122 HOH HOH . H 5 HOH A 122 822 123 HOH HOH . H 5 HOH A 123 823 124 HOH HOH . H 5 HOH A 124 824 125 HOH HOH . H 5 HOH A 125 825 126 HOH HOH . H 5 HOH A 126 826 127 HOH HOH . H 5 HOH A 127 827 128 HOH HOH . H 5 HOH A 128 828 129 HOH HOH . H 5 HOH A 129 829 130 HOH HOH . H 5 HOH A 130 830 131 HOH HOH . H 5 HOH A 131 831 132 HOH HOH . H 5 HOH A 132 832 133 HOH HOH . H 5 HOH A 133 833 134 HOH HOH . H 5 HOH A 134 834 135 HOH HOH . H 5 HOH A 135 835 136 HOH HOH . H 5 HOH A 136 836 137 HOH HOH . H 5 HOH A 137 837 138 HOH HOH . H 5 HOH A 138 838 139 HOH HOH . H 5 HOH A 139 839 140 HOH HOH . H 5 HOH A 140 840 141 HOH HOH . H 5 HOH A 141 841 142 HOH HOH . H 5 HOH A 142 842 143 HOH HOH . H 5 HOH A 143 843 144 HOH HOH . H 5 HOH A 144 844 145 HOH HOH . H 5 HOH A 145 845 146 HOH HOH . H 5 HOH A 146 846 147 HOH HOH . H 5 HOH A 147 847 148 HOH HOH . H 5 HOH A 148 848 149 HOH HOH . H 5 HOH A 149 849 150 HOH HOH . H 5 HOH A 150 850 151 HOH HOH . H 5 HOH A 151 851 152 HOH HOH . H 5 HOH A 152 852 153 HOH HOH . H 5 HOH A 153 853 154 HOH HOH . H 5 HOH A 154 854 155 HOH HOH . H 5 HOH A 155 855 156 HOH HOH . H 5 HOH A 156 856 157 HOH HOH . H 5 HOH A 157 857 158 HOH HOH . H 5 HOH A 158 858 159 HOH HOH . H 5 HOH A 159 859 160 HOH HOH . H 5 HOH A 160 860 161 HOH HOH . H 5 HOH A 161 861 162 HOH HOH . H 5 HOH A 162 862 163 HOH HOH . H 5 HOH A 163 863 164 HOH HOH . H 5 HOH A 164 864 165 HOH HOH . H 5 HOH A 165 865 166 HOH HOH . H 5 HOH A 166 866 167 HOH HOH . H 5 HOH A 167 867 168 HOH HOH . H 5 HOH A 168 868 169 HOH HOH . H 5 HOH A 169 869 170 HOH HOH . H 5 HOH A 170 870 171 HOH HOH . H 5 HOH A 171 871 172 HOH HOH . H 5 HOH A 172 872 173 HOH HOH . H 5 HOH A 173 873 174 HOH HOH . H 5 HOH A 174 874 175 HOH HOH . H 5 HOH A 175 875 176 HOH HOH . H 5 HOH A 176 876 177 HOH HOH . H 5 HOH A 177 877 178 HOH HOH . H 5 HOH A 178 878 179 HOH HOH . H 5 HOH A 179 879 180 HOH HOH . H 5 HOH A 180 880 181 HOH HOH . H 5 HOH A 181 881 182 HOH HOH . H 5 HOH A 182 882 183 HOH HOH . H 5 HOH A 183 883 184 HOH HOH . H 5 HOH A 184 884 185 HOH HOH . H 5 HOH A 185 885 186 HOH HOH . H 5 HOH A 186 886 187 HOH HOH . H 5 HOH A 187 887 188 HOH HOH . H 5 HOH A 188 888 189 HOH HOH . H 5 HOH A 189 889 190 HOH HOH . H 5 HOH A 190 890 191 HOH HOH . H 5 HOH A 191 891 192 HOH HOH . H 5 HOH A 192 892 193 HOH HOH . H 5 HOH A 193 893 194 HOH HOH . H 5 HOH A 194 894 195 HOH HOH . H 5 HOH A 195 895 196 HOH HOH . H 5 HOH A 196 896 197 HOH HOH . H 5 HOH A 197 897 198 HOH HOH . H 5 HOH A 198 898 199 HOH HOH . H 5 HOH A 199 899 200 HOH HOH . H 5 HOH A 200 900 201 HOH HOH . H 5 HOH A 201 901 202 HOH HOH . H 5 HOH A 202 902 203 HOH HOH . H 5 HOH A 203 903 204 HOH HOH . H 5 HOH A 204 904 205 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ORN . . . C 3 -25.014 -39.939 11.496 1 37.39 ? N ORN 602 A 1 HETATM 2 C CA ORN . . . C 3 -24.339 -39.868 12.827 1 39.4 ? CA ORN 602 A 1 HETATM 3 C CB ORN . . . C 3 -24.078 -38.415 13.233 1 40.32 ? CB ORN 602 A 1 HETATM 4 C CG ORN . . . C 3 -23.594 -37.52 12.093 1 41.29 ? CG ORN 602 A 1 HETATM 5 C CD ORN . . . C 3 -23.736 -36.055 12.5 1 42.51 ? CD ORN 602 A 1 HETATM 6 N NE ORN . . . C 3 -23.574 -35.163 11.318 1 43.56 ? NE ORN 602 A 1 HETATM 7 C C ORN . . . C 3 -25.127 -40.586 13.897 1 38.98 ? C ORN 602 A 1 HETATM 8 O O ORN . . . C 3 -26.129 -41.249 13.616 1 38.33 ? O ORN 602 A 1 HETATM 9 O OXT ORN . . . C 3 -24.798 -40.54 15.085 1 37.55 ? OXT ORN 602 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #