data_4O03 # _model_server_result.job_id lPX9FQfMc-OpsMvc2PTK7A _model_server_result.datetime_utc '2024-11-19 11:31:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o03 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":701}' # _entry.id 4O03 # _exptl.entry_id 4O03 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.36 _cell.angle_gamma 90 _cell.entry_id 4O03 _cell.length_a 177.459 _cell.length_b 89.431 _cell.length_c 87.982 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O03 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 17 A CYS 17 1_555 A SG CYS 22 A CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 47 A CYS 47 1_555 A SG CYS 60 A CYS 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf3 A SG CYS 65 A CYS 65 1_555 A SG CYS 143 A CYS 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? disulf ? disulf4 A SG CYS 86 A CYS 86 1_555 A SG CYS 126 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf5 A SG CYS 114 A CYS 114 1_555 A SG CYS 138 A CYS 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 148 A CYS 170 1_555 A SG CYS 226 A CYS 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf7 A SG CYS 169 A CYS 191 1_555 A SG CYS 209 A CYS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf8 A SG CYS 197 A CYS 219 1_555 A SG CYS 221 A CYS 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf9 A SG CYS 271 A CYS 293 1_555 A SG CYS 417 A CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf10 A SG CYS 326 A CYS 348 1_555 A SG CYS 342 A CYS 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf11 A SG CYS 471 A CYS 493 1_555 A SG CYS 485 A CYS 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? disulf ? disulf12 A SG CYS 499 A CYS 521 1_555 A SG CYS 529 A CYS 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? covale ? covale1 A C LEU 5 A LEU 5 1_555 A N CGU 6 A CGU 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.497 ? covale ? covale2 A C CGU 6 A CGU 6 1_555 A N CGU 7 A CGU 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C CGU 7 A CGU 7 1_555 A N VAL 8 A VAL 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 A C LEU 13 A LEU 13 1_555 A N CGU 14 A CGU 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale5 A C CGU 14 A CGU 14 1_555 A N ARG 15 A ARG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A C ARG 15 A ARG 15 1_555 A N CGU 16 A CGU 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale7 A C CGU 16 A CGU 16 1_555 A N CYS 17 A CYS 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 A C VAL 18 A VAL 18 1_555 A N CGU 19 A CGU 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 A C CGU 19 A CGU 19 1_555 A N CGU 20 A CGU 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale10 A C CGU 20 A CGU 20 1_555 A N THR 21 A THR 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.237 ? covale ? covale11 A C TYR 24 A TYR 24 1_555 A N CGU 25 A CGU 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale12 A C CGU 25 A CGU 25 1_555 A N CGU 26 A CGU 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale13 A C CGU 26 A CGU 26 1_555 A N ALA 27 A ALA 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale14 A C PHE 28 A PHE 28 1_555 A N CGU 29 A CGU 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale15 A C CGU 29 A CGU 29 1_555 A N ALA 30 A ALA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 A C LEU 31 A LEU 31 1_555 A N CGU 32 A CGU 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale17 A C CGU 32 A CGU 32 1_555 A N SER 33 A SER 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale18 A ND2 ASN 78 A ASN 78 1_555 H C1 NAG . A NAG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale19 A ND2 ASN 100 A ASN 100 1_555 I C1 NAG . A NAG 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale20 A ND2 ASN 351 A ASN 373 1_555 G C1 NAG . A NAG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? metalc ? metalc1 A O ALA 1 A ALA 1 1_555 D CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc2 A OE11 CGU 6 A CGU 6 1_555 D CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc3 A OE12 CGU 6 A CGU 6 1_555 E CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc4 A OE12 CGU 7 A CGU 7 1_555 B CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc5 A OE21 CGU 7 A CGU 7 1_555 B CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc6 A OE21 CGU 7 A CGU 7 1_555 C CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc7 A OE22 CGU 7 A CGU 7 1_555 D CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? metalc ? metalc8 A OE12 CGU 16 A CGU 16 1_555 C CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc9 A OE21 CGU 16 A CGU 16 1_555 D CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc10 A OE22 CGU 16 A CGU 16 1_555 D CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.153 ? metalc ? metalc11 A OE22 CGU 16 A CGU 16 1_555 E CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc12 A OE21 CGU 16 A CGU 16 1_555 E CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc13 A OE12 CGU 20 A CGU 20 1_555 E CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? metalc ? metalc14 A OE12 CGU 20 A CGU 20 1_555 F CA CA . A CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc15 A OE22 CGU 20 A CGU 20 1_555 F CA CA . A CA 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc16 A OE12 CGU 26 A CGU 26 1_555 B CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc17 A OE11 CGU 26 A CGU 26 1_555 C CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc18 A OE11 CGU 26 A CGU 26 1_555 D CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.079 ? metalc ? metalc19 A OE22 CGU 26 A CGU 26 1_555 D CA CA . A CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.08 ? metalc ? metalc20 A OE22 CGU 29 A CGU 29 1_555 B CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc21 A OE21 CGU 29 A CGU 29 1_555 B CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc22 A OE21 CGU 29 A CGU 29 1_555 C CA CA . A CA 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 256 n n C1 O1 NAG sing 257 n n C1 O5 NAG sing 258 n n C1 H1 NAG sing 259 n n C2 C3 NAG sing 260 n n C2 N2 NAG sing 261 n n C2 H2 NAG sing 262 n n C3 C4 NAG sing 263 n n C3 O3 NAG sing 264 n n C3 H3 NAG sing 265 n n C4 C5 NAG sing 266 n n C4 O4 NAG sing 267 n n C4 H4 NAG sing 268 n n C5 C6 NAG sing 269 n n C5 O5 NAG sing 270 n n C5 H5 NAG sing 271 n n C6 O6 NAG sing 272 n n C6 H61 NAG sing 273 n n C6 H62 NAG sing 274 n n C7 C8 NAG sing 275 n n C7 N2 NAG sing 276 n n C7 O7 NAG doub 277 n n C8 H81 NAG sing 278 n n C8 H82 NAG sing 279 n n C8 H83 NAG sing 280 n n N2 HN2 NAG sing 281 n n O1 HO1 NAG sing 282 n n O3 HO3 NAG sing 283 n n O4 HO4 NAG sing 284 n n O6 HO6 NAG sing 285 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4O03 _atom_sites.fract_transf_matrix[1][1] 0.005635 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002792 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012685 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 602 602 CA CA . C 2 CA A 1 603 603 CA CA . D 2 CA A 1 604 604 CA CA . E 2 CA A 1 605 605 CA CA . F 2 CA A 1 606 606 CA CA . G 3 NAG A 1 701 701 NAG NAG . H 3 NAG A 1 702 702 NAG NAG . I 3 NAG A 1 703 703 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . G 3 -17.453 15.856 5.981 1 75.55 ? C1 NAG 701 A 1 HETATM 2 C C2 NAG . . . G 3 -16.544 15.404 7.154 1 77.46 ? C2 NAG 701 A 1 HETATM 3 C C3 NAG . . . G 3 -16.14 16.437 8.242 1 78.29 ? C3 NAG 701 A 1 HETATM 4 C C4 NAG . . . G 3 -16.503 17.902 8 1 78.21 ? C4 NAG 701 A 1 HETATM 5 C C5 NAG . . . G 3 -17.719 18.038 7.073 1 77.69 ? C5 NAG 701 A 1 HETATM 6 C C6 NAG . . . G 3 -18.093 19.508 6.764 1 77.06 ? C6 NAG 701 A 1 HETATM 7 C C7 NAG . . . G 3 -16.794 13.034 7.757 1 75.72 ? C7 NAG 701 A 1 HETATM 8 C C8 NAG . . . G 3 -17.609 12.082 8.582 1 75.93 ? C8 NAG 701 A 1 HETATM 9 N N2 NAG . . . G 3 -17.183 14.305 7.859 1 76.51 ? N2 NAG 701 A 1 HETATM 10 O O3 NAG . . . G 3 -14.745 16.404 8.49 1 79.06 ? O3 NAG 701 A 1 HETATM 11 O O4 NAG . . . G 3 -16.681 18.512 9.266 1 77.82 ? O4 NAG 701 A 1 HETATM 12 O O5 NAG . . . G 3 -17.456 17.285 5.883 1 77.2 ? O5 NAG 701 A 1 HETATM 13 O O6 NAG . . . G 3 -17.169 20.18 5.917 1 75.99 ? O6 NAG 701 A 1 HETATM 14 O O7 NAG . . . G 3 -15.859 12.631 7.054 1 73.64 ? O7 NAG 701 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #