data_4O0D # _model_server_result.job_id tz6EoazuUo1N7fozJAv8_g _model_server_result.datetime_utc '2024-11-28 17:01:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o0d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 4O0D # _exptl.entry_id 4O0D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4O0D _cell.length_a 59.7 _cell.length_b 59.7 _cell.length_c 299.7 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O0D _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 56 A LEU 55 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.785 ? metalc ? metalc2 A O GLU 57 A GLU 56 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc3 A O ASP 59 A ASP 58 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc4 A O PHE 62 A PHE 61 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc5 A O ALA 64 A ALA 63 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc6 A O CYS 66 A CYS 65 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc7 B O LEU 56 B LEU 55 1_555 E NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc8 B O GLU 57 B GLU 56 1_555 E NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.958 ? metalc ? metalc9 B O ASP 59 B ASP 58 1_555 E NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc10 B O PHE 62 B PHE 61 1_555 E NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc11 B O ALA 64 B ALA 63 1_555 E NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc12 B O CYS 66 B CYS 65 1_555 E NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 120 n n N H GLY sing 121 n n N H2 GLY sing 122 n n CA C GLY sing 123 n n CA HA2 GLY sing 124 n n CA HA3 GLY sing 125 n n C O GLY doub 126 n n C OXT GLY sing 127 n n OXT HXT GLY sing 128 n n # _atom_sites.entry_id 4O0D _atom_sites.fract_transf_matrix[1][1] 0.01675 _atom_sites.fract_transf_matrix[1][2] 0.009671 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019342 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003337 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 401 1 NA NA . D 3 GLY A 1 402 101 GLY GLY . E 2 NA B 1 401 2 NA NA . F 3 GLY B 1 402 201 GLY GLY . G 3 GLY B 1 403 301 GLY GLY . H 3 GLY B 1 404 401 GLY GLY . I 4 HOH A 1 501 1 HOH HOH . I 4 HOH A 2 502 2 HOH HOH . I 4 HOH A 3 503 3 HOH HOH . I 4 HOH A 4 504 8 HOH HOH . I 4 HOH A 5 505 9 HOH HOH . I 4 HOH A 6 506 10 HOH HOH . I 4 HOH A 7 507 15 HOH HOH . I 4 HOH A 8 508 16 HOH HOH . I 4 HOH A 9 509 17 HOH HOH . I 4 HOH A 10 510 18 HOH HOH . I 4 HOH A 11 511 20 HOH HOH . I 4 HOH A 12 512 21 HOH HOH . I 4 HOH A 13 513 22 HOH HOH . I 4 HOH A 14 514 23 HOH HOH . I 4 HOH A 15 515 28 HOH HOH . I 4 HOH A 16 516 29 HOH HOH . I 4 HOH A 17 517 30 HOH HOH . I 4 HOH A 18 518 31 HOH HOH . I 4 HOH A 19 519 35 HOH HOH . I 4 HOH A 20 520 37 HOH HOH . I 4 HOH A 21 521 38 HOH HOH . I 4 HOH A 22 522 40 HOH HOH . I 4 HOH A 23 523 46 HOH HOH . I 4 HOH A 24 524 49 HOH HOH . I 4 HOH A 25 525 50 HOH HOH . I 4 HOH A 26 526 54 HOH HOH . I 4 HOH A 27 527 58 HOH HOH . I 4 HOH A 28 528 61 HOH HOH . I 4 HOH A 29 529 67 HOH HOH . I 4 HOH A 30 530 69 HOH HOH . I 4 HOH A 31 531 71 HOH HOH . I 4 HOH A 32 532 76 HOH HOH . I 4 HOH A 33 533 78 HOH HOH . I 4 HOH A 34 534 82 HOH HOH . I 4 HOH A 35 535 86 HOH HOH . I 4 HOH A 36 536 89 HOH HOH . I 4 HOH A 37 537 90 HOH HOH . I 4 HOH A 38 538 91 HOH HOH . I 4 HOH A 39 539 93 HOH HOH . I 4 HOH A 40 540 94 HOH HOH . I 4 HOH A 41 541 95 HOH HOH . I 4 HOH A 42 542 97 HOH HOH . I 4 HOH A 43 543 98 HOH HOH . I 4 HOH A 44 544 99 HOH HOH . I 4 HOH A 45 545 100 HOH HOH . I 4 HOH A 46 546 101 HOH HOH . I 4 HOH A 47 547 106 HOH HOH . I 4 HOH A 48 548 108 HOH HOH . I 4 HOH A 49 549 109 HOH HOH . I 4 HOH A 50 550 111 HOH HOH . I 4 HOH A 51 551 113 HOH HOH . I 4 HOH A 52 552 115 HOH HOH . I 4 HOH A 53 553 116 HOH HOH . I 4 HOH A 54 554 118 HOH HOH . I 4 HOH A 55 555 119 HOH HOH . I 4 HOH A 56 556 120 HOH HOH . I 4 HOH A 57 557 121 HOH HOH . I 4 HOH A 58 558 123 HOH HOH . I 4 HOH A 59 559 124 HOH HOH . I 4 HOH A 60 560 129 HOH HOH . I 4 HOH A 61 561 130 HOH HOH . I 4 HOH A 62 562 131 HOH HOH . I 4 HOH A 63 563 132 HOH HOH . I 4 HOH A 64 564 133 HOH HOH . I 4 HOH A 65 565 134 HOH HOH . I 4 HOH A 66 566 135 HOH HOH . I 4 HOH A 67 567 137 HOH HOH . I 4 HOH A 68 568 139 HOH HOH . I 4 HOH A 69 569 140 HOH HOH . I 4 HOH A 70 570 142 HOH HOH . I 4 HOH A 71 571 143 HOH HOH . I 4 HOH A 72 572 144 HOH HOH . I 4 HOH A 73 573 147 HOH HOH . I 4 HOH A 74 574 148 HOH HOH . I 4 HOH A 75 575 151 HOH HOH . I 4 HOH A 76 576 158 HOH HOH . I 4 HOH A 77 577 161 HOH HOH . I 4 HOH A 78 578 162 HOH HOH . I 4 HOH A 79 579 163 HOH HOH . I 4 HOH A 80 580 164 HOH HOH . I 4 HOH A 81 581 165 HOH HOH . I 4 HOH A 82 582 166 HOH HOH . I 4 HOH A 83 583 168 HOH HOH . I 4 HOH A 84 584 169 HOH HOH . I 4 HOH A 85 585 180 HOH HOH . I 4 HOH A 86 586 181 HOH HOH . I 4 HOH A 87 587 184 HOH HOH . I 4 HOH A 88 588 185 HOH HOH . I 4 HOH A 89 589 186 HOH HOH . I 4 HOH A 90 590 187 HOH HOH . I 4 HOH A 91 591 193 HOH HOH . I 4 HOH A 92 592 194 HOH HOH . I 4 HOH A 93 593 199 HOH HOH . I 4 HOH A 94 594 202 HOH HOH . I 4 HOH A 95 595 208 HOH HOH . I 4 HOH A 96 596 209 HOH HOH . I 4 HOH A 97 597 211 HOH HOH . I 4 HOH A 98 598 213 HOH HOH . I 4 HOH A 99 599 214 HOH HOH . J 4 HOH B 1 501 4 HOH HOH . J 4 HOH B 2 502 5 HOH HOH . J 4 HOH B 3 503 6 HOH HOH . J 4 HOH B 4 504 7 HOH HOH . J 4 HOH B 5 505 11 HOH HOH . J 4 HOH B 6 506 12 HOH HOH . J 4 HOH B 7 507 13 HOH HOH . J 4 HOH B 8 508 14 HOH HOH . J 4 HOH B 9 509 19 HOH HOH . J 4 HOH B 10 510 24 HOH HOH . J 4 HOH B 11 511 25 HOH HOH . J 4 HOH B 12 512 26 HOH HOH . J 4 HOH B 13 513 27 HOH HOH . J 4 HOH B 14 514 32 HOH HOH . J 4 HOH B 15 515 33 HOH HOH . J 4 HOH B 16 516 34 HOH HOH . J 4 HOH B 17 517 36 HOH HOH . J 4 HOH B 18 518 39 HOH HOH . J 4 HOH B 19 519 41 HOH HOH . J 4 HOH B 20 520 42 HOH HOH . J 4 HOH B 21 521 43 HOH HOH . J 4 HOH B 22 522 44 HOH HOH . J 4 HOH B 23 523 45 HOH HOH . J 4 HOH B 24 524 47 HOH HOH . J 4 HOH B 25 525 48 HOH HOH . J 4 HOH B 26 526 51 HOH HOH . J 4 HOH B 27 527 52 HOH HOH . J 4 HOH B 28 528 53 HOH HOH . J 4 HOH B 29 529 55 HOH HOH . J 4 HOH B 30 530 56 HOH HOH . J 4 HOH B 31 531 57 HOH HOH . J 4 HOH B 32 532 59 HOH HOH . J 4 HOH B 33 533 60 HOH HOH . J 4 HOH B 34 534 62 HOH HOH . J 4 HOH B 35 535 63 HOH HOH . J 4 HOH B 36 536 64 HOH HOH . J 4 HOH B 37 537 65 HOH HOH . J 4 HOH B 38 538 66 HOH HOH . J 4 HOH B 39 539 68 HOH HOH . J 4 HOH B 40 540 70 HOH HOH . J 4 HOH B 41 541 72 HOH HOH . J 4 HOH B 42 542 73 HOH HOH . J 4 HOH B 43 543 74 HOH HOH . J 4 HOH B 44 544 75 HOH HOH . J 4 HOH B 45 545 77 HOH HOH . J 4 HOH B 46 546 79 HOH HOH . J 4 HOH B 47 547 80 HOH HOH . J 4 HOH B 48 548 81 HOH HOH . J 4 HOH B 49 549 83 HOH HOH . J 4 HOH B 50 550 84 HOH HOH . J 4 HOH B 51 551 85 HOH HOH . J 4 HOH B 52 552 87 HOH HOH . J 4 HOH B 53 553 88 HOH HOH . J 4 HOH B 54 554 92 HOH HOH . J 4 HOH B 55 555 96 HOH HOH . J 4 HOH B 56 556 102 HOH HOH . J 4 HOH B 57 557 103 HOH HOH . J 4 HOH B 58 558 104 HOH HOH . J 4 HOH B 59 559 105 HOH HOH . J 4 HOH B 60 560 107 HOH HOH . J 4 HOH B 61 561 110 HOH HOH . J 4 HOH B 62 562 112 HOH HOH . J 4 HOH B 63 563 114 HOH HOH . J 4 HOH B 64 564 117 HOH HOH . J 4 HOH B 65 565 122 HOH HOH . J 4 HOH B 66 566 125 HOH HOH . J 4 HOH B 67 567 126 HOH HOH . J 4 HOH B 68 568 127 HOH HOH . J 4 HOH B 69 569 128 HOH HOH . J 4 HOH B 70 570 136 HOH HOH . J 4 HOH B 71 571 138 HOH HOH . J 4 HOH B 72 572 141 HOH HOH . J 4 HOH B 73 573 145 HOH HOH . J 4 HOH B 74 574 146 HOH HOH . J 4 HOH B 75 575 149 HOH HOH . J 4 HOH B 76 576 150 HOH HOH . J 4 HOH B 77 577 152 HOH HOH . J 4 HOH B 78 578 153 HOH HOH . J 4 HOH B 79 579 154 HOH HOH . J 4 HOH B 80 580 155 HOH HOH . J 4 HOH B 81 581 156 HOH HOH . J 4 HOH B 82 582 157 HOH HOH . J 4 HOH B 83 583 159 HOH HOH . J 4 HOH B 84 584 160 HOH HOH . J 4 HOH B 85 585 167 HOH HOH . J 4 HOH B 86 586 170 HOH HOH . J 4 HOH B 87 587 171 HOH HOH . J 4 HOH B 88 588 172 HOH HOH . J 4 HOH B 89 589 173 HOH HOH . J 4 HOH B 90 590 174 HOH HOH . J 4 HOH B 91 591 175 HOH HOH . J 4 HOH B 92 592 176 HOH HOH . J 4 HOH B 93 593 177 HOH HOH . J 4 HOH B 94 594 178 HOH HOH . J 4 HOH B 95 595 179 HOH HOH . J 4 HOH B 96 596 182 HOH HOH . J 4 HOH B 97 597 183 HOH HOH . J 4 HOH B 98 598 188 HOH HOH . J 4 HOH B 99 599 189 HOH HOH . J 4 HOH B 100 600 190 HOH HOH . J 4 HOH B 101 601 191 HOH HOH . J 4 HOH B 102 602 192 HOH HOH . J 4 HOH B 103 603 195 HOH HOH . J 4 HOH B 104 604 196 HOH HOH . J 4 HOH B 105 605 197 HOH HOH . J 4 HOH B 106 606 198 HOH HOH . J 4 HOH B 107 607 200 HOH HOH . J 4 HOH B 108 608 201 HOH HOH . J 4 HOH B 109 609 203 HOH HOH . J 4 HOH B 110 610 204 HOH HOH . J 4 HOH B 111 611 205 HOH HOH . J 4 HOH B 112 612 206 HOH HOH . J 4 HOH B 113 613 207 HOH HOH . J 4 HOH B 114 614 210 HOH HOH . J 4 HOH B 115 615 212 HOH HOH . J 4 HOH B 116 616 215 HOH HOH . J 4 HOH B 117 617 216 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . . . D 3 -1.059 -4.168 3.513 1 16.86 ? N GLY 402 A 1 HETATM 2 C CA GLY . . . D 3 -2.318 -4.755 4.099 1 17.78 ? CA GLY 402 A 1 HETATM 3 C C GLY . . . D 3 -3.56 -3.892 3.877 1 17.79 ? C GLY 402 A 1 HETATM 4 O O GLY . . . D 3 -3.719 -2.817 4.475 1 16.23 ? O GLY 402 A 1 HETATM 5 O OXT GLY . . . D 3 -4.461 -4.264 3.086 1 18.41 ? OXT GLY 402 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #