data_4O0E # _model_server_result.job_id 6G9ZmAYMv1AcKyCInUzyxg _model_server_result.datetime_utc '2024-11-28 16:20:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o0e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4O0E # _exptl.entry_id 4O0E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4O0E _cell.length_a 59.378 _cell.length_b 59.378 _cell.length_c 298.322 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O0E _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 56 A LEU 55 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc2 A O GLU 57 A GLU 56 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc3 A O ASP 59 A ASP 58 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc4 A O PHE 62 A PHE 61 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc5 A O ALA 64 A ALA 63 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc6 A O CYS 66 A CYS 65 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc7 B O LEU 56 B LEU 55 1_555 D NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc8 B O GLU 57 B GLU 56 1_555 D NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc9 B O ASP 59 B ASP 58 1_555 D NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc10 B O PHE 62 B PHE 61 1_555 D NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc11 B O ALA 64 B ALA 63 1_555 D NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc12 B O CYS 66 B CYS 65 1_555 D NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4O0E _atom_sites.fract_transf_matrix[1][1] 0.016841 _atom_sites.fract_transf_matrix[1][2] 0.009723 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019447 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003352 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 401 1 NA NA . D 2 NA B 1 401 2 NA NA . E 3 HOH A 1 501 2 HOH HOH . E 3 HOH A 2 502 6 HOH HOH . E 3 HOH A 3 503 9 HOH HOH . E 3 HOH A 4 504 10 HOH HOH . E 3 HOH A 5 505 17 HOH HOH . E 3 HOH A 6 506 19 HOH HOH . E 3 HOH A 7 507 21 HOH HOH . E 3 HOH A 8 508 22 HOH HOH . E 3 HOH A 9 509 23 HOH HOH . E 3 HOH A 10 510 25 HOH HOH . E 3 HOH A 11 511 26 HOH HOH . E 3 HOH A 12 512 28 HOH HOH . E 3 HOH A 13 513 29 HOH HOH . E 3 HOH A 14 514 32 HOH HOH . E 3 HOH A 15 515 33 HOH HOH . E 3 HOH A 16 516 34 HOH HOH . E 3 HOH A 17 517 35 HOH HOH . E 3 HOH A 18 518 37 HOH HOH . E 3 HOH A 19 519 38 HOH HOH . E 3 HOH A 20 520 39 HOH HOH . E 3 HOH A 21 521 40 HOH HOH . E 3 HOH A 22 522 41 HOH HOH . E 3 HOH A 23 523 46 HOH HOH . E 3 HOH A 24 524 48 HOH HOH . E 3 HOH A 25 525 49 HOH HOH . E 3 HOH A 26 526 50 HOH HOH . E 3 HOH A 27 527 53 HOH HOH . E 3 HOH A 28 528 54 HOH HOH . E 3 HOH A 29 529 59 HOH HOH . E 3 HOH A 30 530 60 HOH HOH . E 3 HOH A 31 531 61 HOH HOH . E 3 HOH A 32 532 63 HOH HOH . E 3 HOH A 33 533 69 HOH HOH . E 3 HOH A 34 534 70 HOH HOH . E 3 HOH A 35 535 71 HOH HOH . E 3 HOH A 36 536 77 HOH HOH . E 3 HOH A 37 537 78 HOH HOH . E 3 HOH A 38 538 79 HOH HOH . E 3 HOH A 39 539 81 HOH HOH . E 3 HOH A 40 540 82 HOH HOH . E 3 HOH A 41 541 84 HOH HOH . E 3 HOH A 42 542 85 HOH HOH . E 3 HOH A 43 543 86 HOH HOH . E 3 HOH A 44 544 91 HOH HOH . E 3 HOH A 45 545 92 HOH HOH . E 3 HOH A 46 546 94 HOH HOH . E 3 HOH A 47 547 95 HOH HOH . E 3 HOH A 48 548 96 HOH HOH . E 3 HOH A 49 549 98 HOH HOH . E 3 HOH A 50 550 99 HOH HOH . E 3 HOH A 51 551 100 HOH HOH . E 3 HOH A 52 552 102 HOH HOH . E 3 HOH A 53 553 104 HOH HOH . E 3 HOH A 54 554 107 HOH HOH . E 3 HOH A 55 555 108 HOH HOH . E 3 HOH A 56 556 109 HOH HOH . E 3 HOH A 57 557 111 HOH HOH . E 3 HOH A 58 558 112 HOH HOH . E 3 HOH A 59 559 113 HOH HOH . E 3 HOH A 60 560 115 HOH HOH . E 3 HOH A 61 561 116 HOH HOH . E 3 HOH A 62 562 117 HOH HOH . E 3 HOH A 63 563 122 HOH HOH . E 3 HOH A 64 564 123 HOH HOH . E 3 HOH A 65 565 124 HOH HOH . E 3 HOH A 66 566 125 HOH HOH . E 3 HOH A 67 567 126 HOH HOH . E 3 HOH A 68 568 128 HOH HOH . E 3 HOH A 69 569 129 HOH HOH . E 3 HOH A 70 570 130 HOH HOH . E 3 HOH A 71 571 133 HOH HOH . E 3 HOH A 72 572 134 HOH HOH . E 3 HOH A 73 573 138 HOH HOH . E 3 HOH A 74 574 139 HOH HOH . E 3 HOH A 75 575 140 HOH HOH . E 3 HOH A 76 576 142 HOH HOH . E 3 HOH A 77 577 147 HOH HOH . E 3 HOH A 78 578 148 HOH HOH . E 3 HOH A 79 579 149 HOH HOH . E 3 HOH A 80 580 153 HOH HOH . E 3 HOH A 81 581 156 HOH HOH . E 3 HOH A 82 582 157 HOH HOH . E 3 HOH A 83 583 158 HOH HOH . E 3 HOH A 84 584 159 HOH HOH . E 3 HOH A 85 585 160 HOH HOH . E 3 HOH A 86 586 161 HOH HOH . E 3 HOH A 87 587 162 HOH HOH . E 3 HOH A 88 588 163 HOH HOH . E 3 HOH A 89 589 164 HOH HOH . E 3 HOH A 90 590 165 HOH HOH . E 3 HOH A 91 591 166 HOH HOH . E 3 HOH A 92 592 167 HOH HOH . E 3 HOH A 93 593 176 HOH HOH . F 3 HOH B 1 501 1 HOH HOH . F 3 HOH B 2 502 3 HOH HOH . F 3 HOH B 3 503 4 HOH HOH . F 3 HOH B 4 504 5 HOH HOH . F 3 HOH B 5 505 7 HOH HOH . F 3 HOH B 6 506 8 HOH HOH . F 3 HOH B 7 507 11 HOH HOH . F 3 HOH B 8 508 12 HOH HOH . F 3 HOH B 9 509 13 HOH HOH . F 3 HOH B 10 510 14 HOH HOH . F 3 HOH B 11 511 15 HOH HOH . F 3 HOH B 12 512 16 HOH HOH . F 3 HOH B 13 513 18 HOH HOH . F 3 HOH B 14 514 20 HOH HOH . F 3 HOH B 15 515 24 HOH HOH . F 3 HOH B 16 516 27 HOH HOH . F 3 HOH B 17 517 30 HOH HOH . F 3 HOH B 18 518 31 HOH HOH . F 3 HOH B 19 519 36 HOH HOH . F 3 HOH B 20 520 42 HOH HOH . F 3 HOH B 21 521 43 HOH HOH . F 3 HOH B 22 522 44 HOH HOH . F 3 HOH B 23 523 45 HOH HOH . F 3 HOH B 24 524 47 HOH HOH . F 3 HOH B 25 525 51 HOH HOH . F 3 HOH B 26 526 52 HOH HOH . F 3 HOH B 27 527 55 HOH HOH . F 3 HOH B 28 528 56 HOH HOH . F 3 HOH B 29 529 57 HOH HOH . F 3 HOH B 30 530 58 HOH HOH . F 3 HOH B 31 531 62 HOH HOH . F 3 HOH B 32 532 64 HOH HOH . F 3 HOH B 33 533 65 HOH HOH . F 3 HOH B 34 534 66 HOH HOH . F 3 HOH B 35 535 67 HOH HOH . F 3 HOH B 36 536 68 HOH HOH . F 3 HOH B 37 537 72 HOH HOH . F 3 HOH B 38 538 73 HOH HOH . F 3 HOH B 39 539 74 HOH HOH . F 3 HOH B 40 540 75 HOH HOH . F 3 HOH B 41 541 76 HOH HOH . F 3 HOH B 42 542 80 HOH HOH . F 3 HOH B 43 543 83 HOH HOH . F 3 HOH B 44 544 87 HOH HOH . F 3 HOH B 45 545 88 HOH HOH . F 3 HOH B 46 546 89 HOH HOH . F 3 HOH B 47 547 90 HOH HOH . F 3 HOH B 48 548 93 HOH HOH . F 3 HOH B 49 549 97 HOH HOH . F 3 HOH B 50 550 101 HOH HOH . F 3 HOH B 51 551 103 HOH HOH . F 3 HOH B 52 552 105 HOH HOH . F 3 HOH B 53 553 106 HOH HOH . F 3 HOH B 54 554 110 HOH HOH . F 3 HOH B 55 555 114 HOH HOH . F 3 HOH B 56 556 118 HOH HOH . F 3 HOH B 57 557 119 HOH HOH . F 3 HOH B 58 558 120 HOH HOH . F 3 HOH B 59 559 121 HOH HOH . F 3 HOH B 60 560 127 HOH HOH . F 3 HOH B 61 561 131 HOH HOH . F 3 HOH B 62 562 132 HOH HOH . F 3 HOH B 63 563 135 HOH HOH . F 3 HOH B 64 564 136 HOH HOH . F 3 HOH B 65 565 137 HOH HOH . F 3 HOH B 66 566 141 HOH HOH . F 3 HOH B 67 567 143 HOH HOH . F 3 HOH B 68 568 144 HOH HOH . F 3 HOH B 69 569 145 HOH HOH . F 3 HOH B 70 570 146 HOH HOH . F 3 HOH B 71 571 150 HOH HOH . F 3 HOH B 72 572 151 HOH HOH . F 3 HOH B 73 573 152 HOH HOH . F 3 HOH B 74 574 154 HOH HOH . F 3 HOH B 75 575 155 HOH HOH . F 3 HOH B 76 576 168 HOH HOH . F 3 HOH B 77 577 169 HOH HOH . F 3 HOH B 78 578 170 HOH HOH . F 3 HOH B 79 579 171 HOH HOH . F 3 HOH B 80 580 172 HOH HOH . F 3 HOH B 81 581 173 HOH HOH . F 3 HOH B 82 582 174 HOH HOH . F 3 HOH B 83 583 175 HOH HOH . F 3 HOH B 84 584 177 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -10.122 _atom_site.Cartn_y -16.422 _atom_site.Cartn_z 5.486 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.44 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 87 _model_server_stats.parse_time_ms 101 _model_server_stats.create_model_time_ms 57 _model_server_stats.query_time_ms 383 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #