data_4O0F # _model_server_result.job_id uwr9cGhKHdEBIlNECB1_wg _model_server_result.datetime_utc '2024-11-28 17:21:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o0f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4O0F # _exptl.entry_id 4O0F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4O0F _cell.length_a 59.471 _cell.length_b 59.471 _cell.length_c 299.241 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O0F _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 56 A LEU 55 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? metalc ? metalc2 A O GLU 57 A GLU 56 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc3 A O ASP 59 A ASP 58 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc4 A O PHE 62 A PHE 61 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc5 A O ALA 64 A ALA 63 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc6 A O CYS 66 A CYS 65 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc7 A O LEU 167 A LEU 166 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc8 D NA NA . A NA 402 1_555 K O HOH . A HOH 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc9 B O LEU 56 B LEU 55 1_555 G NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc10 B O GLU 57 B GLU 56 1_555 G NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc11 B O ASP 59 B ASP 58 1_555 G NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? metalc ? metalc12 B O PHE 62 B PHE 61 1_555 G NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc13 B O ALA 64 B ALA 63 1_555 G NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc14 B O CYS 66 B CYS 65 1_555 G NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4O0F _atom_sites.fract_transf_matrix[1][1] 0.016815 _atom_sites.fract_transf_matrix[1][2] 0.009708 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019416 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 401 1 NA NA . D 2 NA A 1 402 3 NA NA . E 3 GLY A 1 403 101 GLY GLY . F 3 GLY A 1 404 401 GLY GLY . G 2 NA B 1 401 2 NA NA . H 2 NA B 1 402 4 NA NA . I 3 GLY B 1 403 201 GLY GLY . J 3 GLY B 1 404 301 GLY GLY . K 4 HOH A 1 501 2 HOH HOH . K 4 HOH A 2 502 10 HOH HOH . K 4 HOH A 3 503 12 HOH HOH . K 4 HOH A 4 504 13 HOH HOH . K 4 HOH A 5 505 14 HOH HOH . K 4 HOH A 6 506 16 HOH HOH . K 4 HOH A 7 507 17 HOH HOH . K 4 HOH A 8 508 18 HOH HOH . K 4 HOH A 9 509 19 HOH HOH . K 4 HOH A 10 510 20 HOH HOH . K 4 HOH A 11 511 24 HOH HOH . K 4 HOH A 12 512 26 HOH HOH . K 4 HOH A 13 513 28 HOH HOH . K 4 HOH A 14 514 30 HOH HOH . K 4 HOH A 15 515 31 HOH HOH . K 4 HOH A 16 516 32 HOH HOH . K 4 HOH A 17 517 33 HOH HOH . K 4 HOH A 18 518 39 HOH HOH . K 4 HOH A 19 519 44 HOH HOH . K 4 HOH A 20 520 46 HOH HOH . K 4 HOH A 21 521 47 HOH HOH . K 4 HOH A 22 522 48 HOH HOH . K 4 HOH A 23 523 50 HOH HOH . K 4 HOH A 24 524 51 HOH HOH . K 4 HOH A 25 525 52 HOH HOH . K 4 HOH A 26 526 55 HOH HOH . K 4 HOH A 27 527 58 HOH HOH . K 4 HOH A 28 528 60 HOH HOH . K 4 HOH A 29 529 62 HOH HOH . K 4 HOH A 30 530 68 HOH HOH . K 4 HOH A 31 531 69 HOH HOH . K 4 HOH A 32 532 72 HOH HOH . K 4 HOH A 33 533 73 HOH HOH . K 4 HOH A 34 534 74 HOH HOH . K 4 HOH A 35 535 78 HOH HOH . K 4 HOH A 36 536 79 HOH HOH . K 4 HOH A 37 537 80 HOH HOH . K 4 HOH A 38 538 81 HOH HOH . K 4 HOH A 39 539 82 HOH HOH . K 4 HOH A 40 540 85 HOH HOH . K 4 HOH A 41 541 86 HOH HOH . K 4 HOH A 42 542 88 HOH HOH . K 4 HOH A 43 543 89 HOH HOH . K 4 HOH A 44 544 90 HOH HOH . K 4 HOH A 45 545 91 HOH HOH . K 4 HOH A 46 546 94 HOH HOH . K 4 HOH A 47 547 95 HOH HOH . K 4 HOH A 48 548 96 HOH HOH . K 4 HOH A 49 549 97 HOH HOH . K 4 HOH A 50 550 98 HOH HOH . K 4 HOH A 51 551 103 HOH HOH . K 4 HOH A 52 552 104 HOH HOH . K 4 HOH A 53 553 105 HOH HOH . K 4 HOH A 54 554 106 HOH HOH . K 4 HOH A 55 555 107 HOH HOH . K 4 HOH A 56 556 108 HOH HOH . K 4 HOH A 57 557 111 HOH HOH . K 4 HOH A 58 558 113 HOH HOH . K 4 HOH A 59 559 114 HOH HOH . K 4 HOH A 60 560 117 HOH HOH . K 4 HOH A 61 561 118 HOH HOH . K 4 HOH A 62 562 119 HOH HOH . K 4 HOH A 63 563 121 HOH HOH . K 4 HOH A 64 564 122 HOH HOH . K 4 HOH A 65 565 123 HOH HOH . K 4 HOH A 66 566 126 HOH HOH . K 4 HOH A 67 567 128 HOH HOH . K 4 HOH A 68 568 131 HOH HOH . K 4 HOH A 69 569 132 HOH HOH . K 4 HOH A 70 570 133 HOH HOH . K 4 HOH A 71 571 135 HOH HOH . K 4 HOH A 72 572 137 HOH HOH . K 4 HOH A 73 573 138 HOH HOH . K 4 HOH A 74 574 139 HOH HOH . K 4 HOH A 75 575 140 HOH HOH . K 4 HOH A 76 576 141 HOH HOH . K 4 HOH A 77 577 142 HOH HOH . L 4 HOH B 1 501 1 HOH HOH . L 4 HOH B 2 502 3 HOH HOH . L 4 HOH B 3 503 4 HOH HOH . L 4 HOH B 4 504 5 HOH HOH . L 4 HOH B 5 505 6 HOH HOH . L 4 HOH B 6 506 7 HOH HOH . L 4 HOH B 7 507 8 HOH HOH . L 4 HOH B 8 508 9 HOH HOH . L 4 HOH B 9 509 11 HOH HOH . L 4 HOH B 10 510 15 HOH HOH . L 4 HOH B 11 511 21 HOH HOH . L 4 HOH B 12 512 22 HOH HOH . L 4 HOH B 13 513 23 HOH HOH . L 4 HOH B 14 514 25 HOH HOH . L 4 HOH B 15 515 27 HOH HOH . L 4 HOH B 16 516 29 HOH HOH . L 4 HOH B 17 517 34 HOH HOH . L 4 HOH B 18 518 35 HOH HOH . L 4 HOH B 19 519 36 HOH HOH . L 4 HOH B 20 520 37 HOH HOH . L 4 HOH B 21 521 38 HOH HOH . L 4 HOH B 22 522 40 HOH HOH . L 4 HOH B 23 523 41 HOH HOH . L 4 HOH B 24 524 42 HOH HOH . L 4 HOH B 25 525 43 HOH HOH . L 4 HOH B 26 526 45 HOH HOH . L 4 HOH B 27 527 49 HOH HOH . L 4 HOH B 28 528 53 HOH HOH . L 4 HOH B 29 529 54 HOH HOH . L 4 HOH B 30 530 56 HOH HOH . L 4 HOH B 31 531 57 HOH HOH . L 4 HOH B 32 532 59 HOH HOH . L 4 HOH B 33 533 61 HOH HOH . L 4 HOH B 34 534 63 HOH HOH . L 4 HOH B 35 535 64 HOH HOH . L 4 HOH B 36 536 65 HOH HOH . L 4 HOH B 37 537 66 HOH HOH . L 4 HOH B 38 538 67 HOH HOH . L 4 HOH B 39 539 70 HOH HOH . L 4 HOH B 40 540 71 HOH HOH . L 4 HOH B 41 541 75 HOH HOH . L 4 HOH B 42 542 76 HOH HOH . L 4 HOH B 43 543 77 HOH HOH . L 4 HOH B 44 544 83 HOH HOH . L 4 HOH B 45 545 84 HOH HOH . L 4 HOH B 46 546 87 HOH HOH . L 4 HOH B 47 547 92 HOH HOH . L 4 HOH B 48 548 93 HOH HOH . L 4 HOH B 49 549 99 HOH HOH . L 4 HOH B 50 550 100 HOH HOH . L 4 HOH B 51 551 101 HOH HOH . L 4 HOH B 52 552 102 HOH HOH . L 4 HOH B 53 553 109 HOH HOH . L 4 HOH B 54 554 110 HOH HOH . L 4 HOH B 55 555 112 HOH HOH . L 4 HOH B 56 556 115 HOH HOH . L 4 HOH B 57 557 116 HOH HOH . L 4 HOH B 58 558 120 HOH HOH . L 4 HOH B 59 559 124 HOH HOH . L 4 HOH B 60 560 125 HOH HOH . L 4 HOH B 61 561 127 HOH HOH . L 4 HOH B 62 562 129 HOH HOH . L 4 HOH B 63 563 130 HOH HOH . L 4 HOH B 64 564 134 HOH HOH . L 4 HOH B 65 565 136 HOH HOH . L 4 HOH B 66 566 143 HOH HOH . L 4 HOH B 67 567 144 HOH HOH . L 4 HOH B 68 568 145 HOH HOH . L 4 HOH B 69 569 146 HOH HOH . L 4 HOH B 70 570 147 HOH HOH . L 4 HOH B 71 571 148 HOH HOH . L 4 HOH B 72 572 149 HOH HOH . L 4 HOH B 73 573 150 HOH HOH . L 4 HOH B 74 574 151 HOH HOH . L 4 HOH B 75 575 152 HOH HOH . L 4 HOH B 76 576 153 HOH HOH . L 4 HOH B 77 577 154 HOH HOH . L 4 HOH B 78 578 155 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -9.476 _atom_site.Cartn_y -16.287 _atom_site.Cartn_z 5.441 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #