data_4O0F
#
_model_server_result.job_id            75ilppiCzF1IEMgD2s-aEQ 
_model_server_result.datetime_utc      '2024-11-08 01:57:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4o0f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":404}' 
#
_entry.id    4O0F 
#
_exptl.entry_id    4O0F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              75.067 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4O0F 
_cell.length_a            59.471 
_cell.length_b            59.471 
_cell.length_c            299.241 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4O0F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LEU 56 A LEU 55 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.924 ? 
metalc ? metalc2 A O GLU 57 A GLU 56 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? 
metalc ? metalc3 A O ASP 59 A ASP 58 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
metalc ? metalc4 A O PHE 62 A PHE 61 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? 
metalc ? metalc5 A O ALA 64 A ALA 63 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc6 A O CYS 66 A CYS 65 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
metalc ? metalc7 A O LEU 167 A LEU 166 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc8 D NA NA . A NA 402 1_555 K O HOH . A HOH 571 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? 
metalc ? metalc9 B O LEU 56 B LEU 55 1_555 G NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? 
metalc ? metalc10 B O GLU 57 B GLU 56 1_555 G NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
metalc ? metalc11 B O ASP 59 B ASP 58 1_555 G NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? 
metalc ? metalc12 B O PHE 62 B PHE 61 1_555 G NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? 
metalc ? metalc13 B O ALA 64 B ALA 63 1_555 G NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc14 B O CYS 66 B CYS 65 1_555 G NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
#
_chem_comp.formula           'C2 H5 N O2' 
_chem_comp.formula_weight    75.067 
_chem_comp.id                GLY 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              GLYCINE 
_chem_comp.type              'peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA GLY sing 120 n n 
N H GLY sing 121 n n 
N H2 GLY sing 122 n n 
CA C GLY sing 123 n n 
CA HA2 GLY sing 124 n n 
CA HA3 GLY sing 125 n n 
C O GLY doub 126 n n 
C OXT GLY sing 127 n n 
OXT HXT GLY sing 128 n n 
#
_atom_sites.entry_id                     4O0F 
_atom_sites.fract_transf_matrix[1][1]    0.016815 
_atom_sites.fract_transf_matrix[1][2]    0.009708 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019416 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003342 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 401 1 NA NA . 
D 2 NA A 1 402 3 NA NA . 
E 3 GLY A 1 403 101 GLY GLY . 
F 3 GLY A 1 404 401 GLY GLY . 
G 2 NA B 1 401 2 NA NA . 
H 2 NA B 1 402 4 NA NA . 
I 3 GLY B 1 403 201 GLY GLY . 
J 3 GLY B 1 404 301 GLY GLY . 
K 4 HOH A 1 501 2 HOH HOH . 
K 4 HOH A 2 502 10 HOH HOH . 
K 4 HOH A 3 503 12 HOH HOH . 
K 4 HOH A 4 504 13 HOH HOH . 
K 4 HOH A 5 505 14 HOH HOH . 
K 4 HOH A 6 506 16 HOH HOH . 
K 4 HOH A 7 507 17 HOH HOH . 
K 4 HOH A 8 508 18 HOH HOH . 
K 4 HOH A 9 509 19 HOH HOH . 
K 4 HOH A 10 510 20 HOH HOH . 
K 4 HOH A 11 511 24 HOH HOH . 
K 4 HOH A 12 512 26 HOH HOH . 
K 4 HOH A 13 513 28 HOH HOH . 
K 4 HOH A 14 514 30 HOH HOH . 
K 4 HOH A 15 515 31 HOH HOH . 
K 4 HOH A 16 516 32 HOH HOH . 
K 4 HOH A 17 517 33 HOH HOH . 
K 4 HOH A 18 518 39 HOH HOH . 
K 4 HOH A 19 519 44 HOH HOH . 
K 4 HOH A 20 520 46 HOH HOH . 
K 4 HOH A 21 521 47 HOH HOH . 
K 4 HOH A 22 522 48 HOH HOH . 
K 4 HOH A 23 523 50 HOH HOH . 
K 4 HOH A 24 524 51 HOH HOH . 
K 4 HOH A 25 525 52 HOH HOH . 
K 4 HOH A 26 526 55 HOH HOH . 
K 4 HOH A 27 527 58 HOH HOH . 
K 4 HOH A 28 528 60 HOH HOH . 
K 4 HOH A 29 529 62 HOH HOH . 
K 4 HOH A 30 530 68 HOH HOH . 
K 4 HOH A 31 531 69 HOH HOH . 
K 4 HOH A 32 532 72 HOH HOH . 
K 4 HOH A 33 533 73 HOH HOH . 
K 4 HOH A 34 534 74 HOH HOH . 
K 4 HOH A 35 535 78 HOH HOH . 
K 4 HOH A 36 536 79 HOH HOH . 
K 4 HOH A 37 537 80 HOH HOH . 
K 4 HOH A 38 538 81 HOH HOH . 
K 4 HOH A 39 539 82 HOH HOH . 
K 4 HOH A 40 540 85 HOH HOH . 
K 4 HOH A 41 541 86 HOH HOH . 
K 4 HOH A 42 542 88 HOH HOH . 
K 4 HOH A 43 543 89 HOH HOH . 
K 4 HOH A 44 544 90 HOH HOH . 
K 4 HOH A 45 545 91 HOH HOH . 
K 4 HOH A 46 546 94 HOH HOH . 
K 4 HOH A 47 547 95 HOH HOH . 
K 4 HOH A 48 548 96 HOH HOH . 
K 4 HOH A 49 549 97 HOH HOH . 
K 4 HOH A 50 550 98 HOH HOH . 
K 4 HOH A 51 551 103 HOH HOH . 
K 4 HOH A 52 552 104 HOH HOH . 
K 4 HOH A 53 553 105 HOH HOH . 
K 4 HOH A 54 554 106 HOH HOH . 
K 4 HOH A 55 555 107 HOH HOH . 
K 4 HOH A 56 556 108 HOH HOH . 
K 4 HOH A 57 557 111 HOH HOH . 
K 4 HOH A 58 558 113 HOH HOH . 
K 4 HOH A 59 559 114 HOH HOH . 
K 4 HOH A 60 560 117 HOH HOH . 
K 4 HOH A 61 561 118 HOH HOH . 
K 4 HOH A 62 562 119 HOH HOH . 
K 4 HOH A 63 563 121 HOH HOH . 
K 4 HOH A 64 564 122 HOH HOH . 
K 4 HOH A 65 565 123 HOH HOH . 
K 4 HOH A 66 566 126 HOH HOH . 
K 4 HOH A 67 567 128 HOH HOH . 
K 4 HOH A 68 568 131 HOH HOH . 
K 4 HOH A 69 569 132 HOH HOH . 
K 4 HOH A 70 570 133 HOH HOH . 
K 4 HOH A 71 571 135 HOH HOH . 
K 4 HOH A 72 572 137 HOH HOH . 
K 4 HOH A 73 573 138 HOH HOH . 
K 4 HOH A 74 574 139 HOH HOH . 
K 4 HOH A 75 575 140 HOH HOH . 
K 4 HOH A 76 576 141 HOH HOH . 
K 4 HOH A 77 577 142 HOH HOH . 
L 4 HOH B 1 501 1 HOH HOH . 
L 4 HOH B 2 502 3 HOH HOH . 
L 4 HOH B 3 503 4 HOH HOH . 
L 4 HOH B 4 504 5 HOH HOH . 
L 4 HOH B 5 505 6 HOH HOH . 
L 4 HOH B 6 506 7 HOH HOH . 
L 4 HOH B 7 507 8 HOH HOH . 
L 4 HOH B 8 508 9 HOH HOH . 
L 4 HOH B 9 509 11 HOH HOH . 
L 4 HOH B 10 510 15 HOH HOH . 
L 4 HOH B 11 511 21 HOH HOH . 
L 4 HOH B 12 512 22 HOH HOH . 
L 4 HOH B 13 513 23 HOH HOH . 
L 4 HOH B 14 514 25 HOH HOH . 
L 4 HOH B 15 515 27 HOH HOH . 
L 4 HOH B 16 516 29 HOH HOH . 
L 4 HOH B 17 517 34 HOH HOH . 
L 4 HOH B 18 518 35 HOH HOH . 
L 4 HOH B 19 519 36 HOH HOH . 
L 4 HOH B 20 520 37 HOH HOH . 
L 4 HOH B 21 521 38 HOH HOH . 
L 4 HOH B 22 522 40 HOH HOH . 
L 4 HOH B 23 523 41 HOH HOH . 
L 4 HOH B 24 524 42 HOH HOH . 
L 4 HOH B 25 525 43 HOH HOH . 
L 4 HOH B 26 526 45 HOH HOH . 
L 4 HOH B 27 527 49 HOH HOH . 
L 4 HOH B 28 528 53 HOH HOH . 
L 4 HOH B 29 529 54 HOH HOH . 
L 4 HOH B 30 530 56 HOH HOH . 
L 4 HOH B 31 531 57 HOH HOH . 
L 4 HOH B 32 532 59 HOH HOH . 
L 4 HOH B 33 533 61 HOH HOH . 
L 4 HOH B 34 534 63 HOH HOH . 
L 4 HOH B 35 535 64 HOH HOH . 
L 4 HOH B 36 536 65 HOH HOH . 
L 4 HOH B 37 537 66 HOH HOH . 
L 4 HOH B 38 538 67 HOH HOH . 
L 4 HOH B 39 539 70 HOH HOH . 
L 4 HOH B 40 540 71 HOH HOH . 
L 4 HOH B 41 541 75 HOH HOH . 
L 4 HOH B 42 542 76 HOH HOH . 
L 4 HOH B 43 543 77 HOH HOH . 
L 4 HOH B 44 544 83 HOH HOH . 
L 4 HOH B 45 545 84 HOH HOH . 
L 4 HOH B 46 546 87 HOH HOH . 
L 4 HOH B 47 547 92 HOH HOH . 
L 4 HOH B 48 548 93 HOH HOH . 
L 4 HOH B 49 549 99 HOH HOH . 
L 4 HOH B 50 550 100 HOH HOH . 
L 4 HOH B 51 551 101 HOH HOH . 
L 4 HOH B 52 552 102 HOH HOH . 
L 4 HOH B 53 553 109 HOH HOH . 
L 4 HOH B 54 554 110 HOH HOH . 
L 4 HOH B 55 555 112 HOH HOH . 
L 4 HOH B 56 556 115 HOH HOH . 
L 4 HOH B 57 557 116 HOH HOH . 
L 4 HOH B 58 558 120 HOH HOH . 
L 4 HOH B 59 559 124 HOH HOH . 
L 4 HOH B 60 560 125 HOH HOH . 
L 4 HOH B 61 561 127 HOH HOH . 
L 4 HOH B 62 562 129 HOH HOH . 
L 4 HOH B 63 563 130 HOH HOH . 
L 4 HOH B 64 564 134 HOH HOH . 
L 4 HOH B 65 565 136 HOH HOH . 
L 4 HOH B 66 566 143 HOH HOH . 
L 4 HOH B 67 567 144 HOH HOH . 
L 4 HOH B 68 568 145 HOH HOH . 
L 4 HOH B 69 569 146 HOH HOH . 
L 4 HOH B 70 570 147 HOH HOH . 
L 4 HOH B 71 571 148 HOH HOH . 
L 4 HOH B 72 572 149 HOH HOH . 
L 4 HOH B 73 573 150 HOH HOH . 
L 4 HOH B 74 574 151 HOH HOH . 
L 4 HOH B 75 575 152 HOH HOH . 
L 4 HOH B 76 576 153 HOH HOH . 
L 4 HOH B 77 577 154 HOH HOH . 
L 4 HOH B 78 578 155 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N GLY . . . F 3 -3.152 -9.864 -19.352 1 29.93 ? N GLY 404 A 1 
HETATM 2 C CA GLY . . . F 3 -2.061 -10.508 -18.562 1 31.8 ? CA GLY 404 A 1 
HETATM 3 C C GLY . . . F 3 -0.739 -9.791 -18.706 1 30.4 ? C GLY 404 A 1 
HETATM 4 O O GLY . . . F 3 -0.631 -8.76 -19.376 1 34.51 ? O GLY 404 A 1 
HETATM 5 O OXT GLY . . . F 3 0.265 -10.204 -18.156 1 24.91 ? OXT GLY 404 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#