data_4O0G # _model_server_result.job_id pEoHbeZ5NMe0BiHfME0G-w _model_server_result.datetime_utc '2024-11-28 17:00:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o0g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 4O0G # _exptl.entry_id 4O0G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4O0G _cell.length_a 59.439 _cell.length_b 59.439 _cell.length_c 306.794 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O0G _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LEU 56 A LEU 55 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc2 A O GLU 57 A GLU 56 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc3 A O ASP 59 A ASP 58 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc4 A O PHE 62 A PHE 61 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc5 A O ALA 64 A ALA 63 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc6 A O CYS 66 A CYS 65 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc7 B O LEU 56 B LEU 55 1_555 D NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc8 B O GLU 57 B GLU 56 1_555 D NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc9 B O ASP 59 B ASP 58 1_555 D NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc10 B O PHE 62 B PHE 61 1_555 D NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.869 ? metalc ? metalc11 B O ALA 64 B ALA 63 1_555 D NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc12 B O CYS 66 B CYS 65 1_555 D NA NA . B NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4O0G _atom_sites.fract_transf_matrix[1][1] 0.016824 _atom_sites.fract_transf_matrix[1][2] 0.009713 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019427 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00326 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 401 1 NA NA . D 2 NA B 1 401 2 NA NA . E 3 HOH A 1 501 1 HOH HOH . E 3 HOH A 2 502 2 HOH HOH . E 3 HOH A 3 503 4 HOH HOH . E 3 HOH A 4 504 5 HOH HOH . E 3 HOH A 5 505 6 HOH HOH . E 3 HOH A 6 506 7 HOH HOH . E 3 HOH A 7 507 9 HOH HOH . E 3 HOH A 8 508 11 HOH HOH . E 3 HOH A 9 509 12 HOH HOH . E 3 HOH A 10 510 13 HOH HOH . E 3 HOH A 11 511 14 HOH HOH . E 3 HOH A 12 512 19 HOH HOH . E 3 HOH A 13 513 22 HOH HOH . E 3 HOH A 14 514 24 HOH HOH . E 3 HOH A 15 515 25 HOH HOH . E 3 HOH A 16 516 26 HOH HOH . E 3 HOH A 17 517 32 HOH HOH . E 3 HOH A 18 518 33 HOH HOH . E 3 HOH A 19 519 36 HOH HOH . E 3 HOH A 20 520 40 HOH HOH . E 3 HOH A 21 521 41 HOH HOH . E 3 HOH A 22 522 42 HOH HOH . E 3 HOH A 23 523 44 HOH HOH . E 3 HOH A 24 524 45 HOH HOH . E 3 HOH A 25 525 46 HOH HOH . E 3 HOH A 26 526 48 HOH HOH . E 3 HOH A 27 527 51 HOH HOH . E 3 HOH A 28 528 58 HOH HOH . E 3 HOH A 29 529 60 HOH HOH . E 3 HOH A 30 530 61 HOH HOH . E 3 HOH A 31 531 63 HOH HOH . E 3 HOH A 32 532 67 HOH HOH . E 3 HOH A 33 533 68 HOH HOH . E 3 HOH A 34 534 70 HOH HOH . E 3 HOH A 35 535 71 HOH HOH . E 3 HOH A 36 536 76 HOH HOH . E 3 HOH A 37 537 77 HOH HOH . E 3 HOH A 38 538 78 HOH HOH . E 3 HOH A 39 539 79 HOH HOH . E 3 HOH A 40 540 80 HOH HOH . E 3 HOH A 41 541 88 HOH HOH . E 3 HOH A 42 542 89 HOH HOH . E 3 HOH A 43 543 92 HOH HOH . E 3 HOH A 44 544 93 HOH HOH . E 3 HOH A 45 545 96 HOH HOH . E 3 HOH A 46 546 97 HOH HOH . E 3 HOH A 47 547 100 HOH HOH . E 3 HOH A 48 548 102 HOH HOH . E 3 HOH A 49 549 105 HOH HOH . E 3 HOH A 50 550 106 HOH HOH . E 3 HOH A 51 551 107 HOH HOH . E 3 HOH A 52 552 108 HOH HOH . E 3 HOH A 53 553 109 HOH HOH . E 3 HOH A 54 554 110 HOH HOH . E 3 HOH A 55 555 111 HOH HOH . E 3 HOH A 56 556 112 HOH HOH . E 3 HOH A 57 557 113 HOH HOH . E 3 HOH A 58 558 132 HOH HOH . E 3 HOH A 59 559 133 HOH HOH . E 3 HOH A 60 560 134 HOH HOH . E 3 HOH A 61 561 136 HOH HOH . E 3 HOH A 62 562 137 HOH HOH . E 3 HOH A 63 563 138 HOH HOH . E 3 HOH A 64 564 139 HOH HOH . E 3 HOH A 65 565 140 HOH HOH . E 3 HOH A 66 566 141 HOH HOH . E 3 HOH A 67 567 143 HOH HOH . E 3 HOH A 68 568 150 HOH HOH . E 3 HOH A 69 569 151 HOH HOH . F 3 HOH B 1 501 3 HOH HOH . F 3 HOH B 2 502 8 HOH HOH . F 3 HOH B 3 503 10 HOH HOH . F 3 HOH B 4 504 15 HOH HOH . F 3 HOH B 5 505 16 HOH HOH . F 3 HOH B 6 506 17 HOH HOH . F 3 HOH B 7 507 18 HOH HOH . F 3 HOH B 8 508 20 HOH HOH . F 3 HOH B 9 509 21 HOH HOH . F 3 HOH B 10 510 23 HOH HOH . F 3 HOH B 11 511 27 HOH HOH . F 3 HOH B 12 512 28 HOH HOH . F 3 HOH B 13 513 29 HOH HOH . F 3 HOH B 14 514 30 HOH HOH . F 3 HOH B 15 515 31 HOH HOH . F 3 HOH B 16 516 34 HOH HOH . F 3 HOH B 17 517 35 HOH HOH . F 3 HOH B 18 518 37 HOH HOH . F 3 HOH B 19 519 38 HOH HOH . F 3 HOH B 20 520 39 HOH HOH . F 3 HOH B 21 521 43 HOH HOH . F 3 HOH B 22 522 47 HOH HOH . F 3 HOH B 23 523 49 HOH HOH . F 3 HOH B 24 524 50 HOH HOH . F 3 HOH B 25 525 52 HOH HOH . F 3 HOH B 26 526 53 HOH HOH . F 3 HOH B 27 527 54 HOH HOH . F 3 HOH B 28 528 55 HOH HOH . F 3 HOH B 29 529 56 HOH HOH . F 3 HOH B 30 530 57 HOH HOH . F 3 HOH B 31 531 59 HOH HOH . F 3 HOH B 32 532 62 HOH HOH . F 3 HOH B 33 533 64 HOH HOH . F 3 HOH B 34 534 65 HOH HOH . F 3 HOH B 35 535 66 HOH HOH . F 3 HOH B 36 536 69 HOH HOH . F 3 HOH B 37 537 72 HOH HOH . F 3 HOH B 38 538 73 HOH HOH . F 3 HOH B 39 539 74 HOH HOH . F 3 HOH B 40 540 75 HOH HOH . F 3 HOH B 41 541 81 HOH HOH . F 3 HOH B 42 542 82 HOH HOH . F 3 HOH B 43 543 83 HOH HOH . F 3 HOH B 44 544 84 HOH HOH . F 3 HOH B 45 545 85 HOH HOH . F 3 HOH B 46 546 86 HOH HOH . F 3 HOH B 47 547 87 HOH HOH . F 3 HOH B 48 548 90 HOH HOH . F 3 HOH B 49 549 91 HOH HOH . F 3 HOH B 50 550 94 HOH HOH . F 3 HOH B 51 551 95 HOH HOH . F 3 HOH B 52 552 98 HOH HOH . F 3 HOH B 53 553 99 HOH HOH . F 3 HOH B 54 554 101 HOH HOH . F 3 HOH B 55 555 103 HOH HOH . F 3 HOH B 56 556 104 HOH HOH . F 3 HOH B 57 557 114 HOH HOH . F 3 HOH B 58 558 115 HOH HOH . F 3 HOH B 59 559 116 HOH HOH . F 3 HOH B 60 560 117 HOH HOH . F 3 HOH B 61 561 118 HOH HOH . F 3 HOH B 62 562 119 HOH HOH . F 3 HOH B 63 563 120 HOH HOH . F 3 HOH B 64 564 121 HOH HOH . F 3 HOH B 65 565 122 HOH HOH . F 3 HOH B 66 566 123 HOH HOH . F 3 HOH B 67 567 124 HOH HOH . F 3 HOH B 68 568 125 HOH HOH . F 3 HOH B 69 569 126 HOH HOH . F 3 HOH B 70 570 127 HOH HOH . F 3 HOH B 71 571 128 HOH HOH . F 3 HOH B 72 572 129 HOH HOH . F 3 HOH B 73 573 130 HOH HOH . F 3 HOH B 74 574 131 HOH HOH . F 3 HOH B 75 575 135 HOH HOH . F 3 HOH B 76 576 142 HOH HOH . F 3 HOH B 77 577 144 HOH HOH . F 3 HOH B 78 578 145 HOH HOH . F 3 HOH B 79 579 146 HOH HOH . F 3 HOH B 80 580 147 HOH HOH . F 3 HOH B 81 581 148 HOH HOH . F 3 HOH B 82 582 149 HOH HOH . F 3 HOH B 83 583 152 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x -8.544 _atom_site.Cartn_y 16.628 _atom_site.Cartn_z -21.09 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 1 #