data_4O0H # _model_server_result.job_id ozUB-dKhZWFH7MJiBMl7Rg _model_server_result.datetime_utc '2024-11-08 04:12:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o0h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 4O0H # _exptl.entry_id 4O0H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4O0H _cell.length_a 59.651 _cell.length_b 59.651 _cell.length_c 298.517 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O0H _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG1 THR 169 A THR 168 1_555 C CG IAS . A IAS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.48 ? covale ? covale2 B OG1 THR 169 B THR 168 1_555 E CG IAS . B IAS 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? metalc ? metalc1 A O LEU 56 A LEU 55 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc2 A O ASP 59 A ASP 58 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc3 A O PHE 62 A PHE 61 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc4 A O ALA 64 A ALA 63 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc5 A O CYS 66 A CYS 65 1_555 D NA NA . A NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc6 B O LEU 56 B LEU 55 1_555 F NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc7 B O GLU 57 B GLU 56 1_555 F NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc8 B O ASP 59 B ASP 58 1_555 F NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc9 B O PHE 62 B PHE 61 1_555 F NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc10 B O ALA 64 B ALA 63 1_555 F NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc11 B O CYS 66 B CYS 65 1_555 F NA NA . B NA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4O0H _atom_sites.fract_transf_matrix[1][1] 0.016764 _atom_sites.fract_transf_matrix[1][2] 0.009679 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019358 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00335 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IAS A 1 401 168 IAS THN . D 3 NA A 1 402 1 NA NA . E 2 IAS B 1 401 168 IAS THN . F 3 NA B 1 402 2 NA NA . G 4 HOH A 1 501 2 HOH HOH . G 4 HOH A 2 502 3 HOH HOH . G 4 HOH A 3 503 5 HOH HOH . G 4 HOH A 4 504 6 HOH HOH . G 4 HOH A 5 505 7 HOH HOH . G 4 HOH A 6 506 9 HOH HOH . G 4 HOH A 7 507 10 HOH HOH . G 4 HOH A 8 508 11 HOH HOH . G 4 HOH A 9 509 12 HOH HOH . G 4 HOH A 10 510 13 HOH HOH . G 4 HOH A 11 511 16 HOH HOH . G 4 HOH A 12 512 19 HOH HOH . G 4 HOH A 13 513 20 HOH HOH . G 4 HOH A 14 514 22 HOH HOH . G 4 HOH A 15 515 23 HOH HOH . G 4 HOH A 16 516 27 HOH HOH . G 4 HOH A 17 517 28 HOH HOH . G 4 HOH A 18 518 30 HOH HOH . G 4 HOH A 19 519 31 HOH HOH . G 4 HOH A 20 520 33 HOH HOH . G 4 HOH A 21 521 36 HOH HOH . G 4 HOH A 22 522 40 HOH HOH . G 4 HOH A 23 523 42 HOH HOH . G 4 HOH A 24 524 44 HOH HOH . G 4 HOH A 25 525 48 HOH HOH . G 4 HOH A 26 526 49 HOH HOH . G 4 HOH A 27 527 51 HOH HOH . G 4 HOH A 28 528 52 HOH HOH . G 4 HOH A 29 529 53 HOH HOH . G 4 HOH A 30 530 54 HOH HOH . G 4 HOH A 31 531 62 HOH HOH . G 4 HOH A 32 532 64 HOH HOH . G 4 HOH A 33 533 66 HOH HOH . G 4 HOH A 34 534 67 HOH HOH . G 4 HOH A 35 535 71 HOH HOH . G 4 HOH A 36 536 75 HOH HOH . G 4 HOH A 37 537 78 HOH HOH . G 4 HOH A 38 538 79 HOH HOH . G 4 HOH A 39 539 80 HOH HOH . G 4 HOH A 40 540 81 HOH HOH . G 4 HOH A 41 541 87 HOH HOH . G 4 HOH A 42 542 89 HOH HOH . G 4 HOH A 43 543 90 HOH HOH . G 4 HOH A 44 544 91 HOH HOH . G 4 HOH A 45 545 92 HOH HOH . G 4 HOH A 46 546 93 HOH HOH . G 4 HOH A 47 547 95 HOH HOH . G 4 HOH A 48 548 96 HOH HOH . G 4 HOH A 49 549 98 HOH HOH . G 4 HOH A 50 550 100 HOH HOH . G 4 HOH A 51 551 104 HOH HOH . G 4 HOH A 52 552 108 HOH HOH . G 4 HOH A 53 553 110 HOH HOH . G 4 HOH A 54 554 111 HOH HOH . G 4 HOH A 55 555 114 HOH HOH . G 4 HOH A 56 556 117 HOH HOH . G 4 HOH A 57 557 118 HOH HOH . G 4 HOH A 58 558 121 HOH HOH . G 4 HOH A 59 559 130 HOH HOH . G 4 HOH A 60 560 132 HOH HOH . G 4 HOH A 61 561 133 HOH HOH . G 4 HOH A 62 562 139 HOH HOH . G 4 HOH A 63 563 140 HOH HOH . G 4 HOH A 64 564 143 HOH HOH . G 4 HOH A 65 565 144 HOH HOH . G 4 HOH A 66 566 145 HOH HOH . G 4 HOH A 67 567 146 HOH HOH . G 4 HOH A 68 568 147 HOH HOH . G 4 HOH A 69 569 149 HOH HOH . G 4 HOH A 70 570 151 HOH HOH . G 4 HOH A 71 571 156 HOH HOH . G 4 HOH A 72 572 157 HOH HOH . G 4 HOH A 73 573 161 HOH HOH . G 4 HOH A 74 574 162 HOH HOH . G 4 HOH A 75 575 163 HOH HOH . G 4 HOH A 76 576 165 HOH HOH . G 4 HOH A 77 577 167 HOH HOH . G 4 HOH A 78 578 169 HOH HOH . G 4 HOH A 79 579 171 HOH HOH . G 4 HOH A 80 580 172 HOH HOH . G 4 HOH A 81 581 173 HOH HOH . G 4 HOH A 82 582 174 HOH HOH . G 4 HOH A 83 583 175 HOH HOH . G 4 HOH A 84 584 180 HOH HOH . G 4 HOH A 85 585 181 HOH HOH . G 4 HOH A 86 586 182 HOH HOH . G 4 HOH A 87 587 183 HOH HOH . G 4 HOH A 88 588 184 HOH HOH . G 4 HOH A 89 589 191 HOH HOH . H 4 HOH B 1 501 1 HOH HOH . H 4 HOH B 2 502 4 HOH HOH . H 4 HOH B 3 503 8 HOH HOH . H 4 HOH B 4 504 14 HOH HOH . H 4 HOH B 5 505 15 HOH HOH . H 4 HOH B 6 506 17 HOH HOH . H 4 HOH B 7 507 18 HOH HOH . H 4 HOH B 8 508 21 HOH HOH . H 4 HOH B 9 509 24 HOH HOH . H 4 HOH B 10 510 25 HOH HOH . H 4 HOH B 11 511 26 HOH HOH . H 4 HOH B 12 512 29 HOH HOH . H 4 HOH B 13 513 32 HOH HOH . H 4 HOH B 14 514 34 HOH HOH . H 4 HOH B 15 515 35 HOH HOH . H 4 HOH B 16 516 37 HOH HOH . H 4 HOH B 17 517 38 HOH HOH . H 4 HOH B 18 518 39 HOH HOH . H 4 HOH B 19 519 41 HOH HOH . H 4 HOH B 20 520 43 HOH HOH . H 4 HOH B 21 521 45 HOH HOH . H 4 HOH B 22 522 46 HOH HOH . H 4 HOH B 23 523 47 HOH HOH . H 4 HOH B 24 524 50 HOH HOH . H 4 HOH B 25 525 55 HOH HOH . H 4 HOH B 26 526 56 HOH HOH . H 4 HOH B 27 527 57 HOH HOH . H 4 HOH B 28 528 58 HOH HOH . H 4 HOH B 29 529 59 HOH HOH . H 4 HOH B 30 530 60 HOH HOH . H 4 HOH B 31 531 61 HOH HOH . H 4 HOH B 32 532 63 HOH HOH . H 4 HOH B 33 533 65 HOH HOH . H 4 HOH B 34 534 68 HOH HOH . H 4 HOH B 35 535 69 HOH HOH . H 4 HOH B 36 536 70 HOH HOH . H 4 HOH B 37 537 72 HOH HOH . H 4 HOH B 38 538 73 HOH HOH . H 4 HOH B 39 539 74 HOH HOH . H 4 HOH B 40 540 76 HOH HOH . H 4 HOH B 41 541 77 HOH HOH . H 4 HOH B 42 542 82 HOH HOH . H 4 HOH B 43 543 83 HOH HOH . H 4 HOH B 44 544 84 HOH HOH . H 4 HOH B 45 545 85 HOH HOH . H 4 HOH B 46 546 86 HOH HOH . H 4 HOH B 47 547 88 HOH HOH . H 4 HOH B 48 548 94 HOH HOH . H 4 HOH B 49 549 97 HOH HOH . H 4 HOH B 50 550 99 HOH HOH . H 4 HOH B 51 551 101 HOH HOH . H 4 HOH B 52 552 102 HOH HOH . H 4 HOH B 53 553 103 HOH HOH . H 4 HOH B 54 554 105 HOH HOH . H 4 HOH B 55 555 106 HOH HOH . H 4 HOH B 56 556 107 HOH HOH . H 4 HOH B 57 557 109 HOH HOH . H 4 HOH B 58 558 112 HOH HOH . H 4 HOH B 59 559 113 HOH HOH . H 4 HOH B 60 560 115 HOH HOH . H 4 HOH B 61 561 116 HOH HOH . H 4 HOH B 62 562 119 HOH HOH . H 4 HOH B 63 563 120 HOH HOH . H 4 HOH B 64 564 122 HOH HOH . H 4 HOH B 65 565 123 HOH HOH . H 4 HOH B 66 566 124 HOH HOH . H 4 HOH B 67 567 125 HOH HOH . H 4 HOH B 68 568 126 HOH HOH . H 4 HOH B 69 569 127 HOH HOH . H 4 HOH B 70 570 128 HOH HOH . H 4 HOH B 71 571 129 HOH HOH . H 4 HOH B 72 572 131 HOH HOH . H 4 HOH B 73 573 134 HOH HOH . H 4 HOH B 74 574 135 HOH HOH . H 4 HOH B 75 575 136 HOH HOH . H 4 HOH B 76 576 137 HOH HOH . H 4 HOH B 77 577 138 HOH HOH . H 4 HOH B 78 578 141 HOH HOH . H 4 HOH B 79 579 142 HOH HOH . H 4 HOH B 80 580 148 HOH HOH . H 4 HOH B 81 581 150 HOH HOH . H 4 HOH B 82 582 152 HOH HOH . H 4 HOH B 83 583 153 HOH HOH . H 4 HOH B 84 584 154 HOH HOH . H 4 HOH B 85 585 155 HOH HOH . H 4 HOH B 86 586 158 HOH HOH . H 4 HOH B 87 587 159 HOH HOH . H 4 HOH B 88 588 160 HOH HOH . H 4 HOH B 89 589 164 HOH HOH . H 4 HOH B 90 590 166 HOH HOH . H 4 HOH B 91 591 168 HOH HOH . H 4 HOH B 92 592 170 HOH HOH . H 4 HOH B 93 593 176 HOH HOH . H 4 HOH B 94 594 177 HOH HOH . H 4 HOH B 95 595 178 HOH HOH . H 4 HOH B 96 596 179 HOH HOH . H 4 HOH B 97 597 185 HOH HOH . H 4 HOH B 98 598 186 HOH HOH . H 4 HOH B 99 599 187 HOH HOH . H 4 HOH B 100 600 188 HOH HOH . H 4 HOH B 101 601 189 HOH HOH . H 4 HOH B 102 602 190 HOH HOH . H 4 HOH B 103 603 192 HOH HOH . H 4 HOH B 104 604 193 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -9.199 _atom_site.Cartn_y -16.385 _atom_site.Cartn_z 5.287 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #