data_4O0S # _model_server_result.job_id ZwPBmxShnMPvGq9SfVnk8w _model_server_result.datetime_utc '2024-12-26 10:24:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o0s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 4O0S # _exptl.entry_id 4O0S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4O0S _cell.length_a 82.253 _cell.length_b 82.253 _cell.length_c 172.655 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O0S _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id ADN _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' ADN sing 1 n n O5' HO5' ADN sing 2 n n C5' C4' ADN sing 3 n n C5' "H5'1" ADN sing 4 n n C5' "H5'2" ADN sing 5 n n C4' O4' ADN sing 6 n n C4' C3' ADN sing 7 n n C4' H4' ADN sing 8 n n O4' C1' ADN sing 9 n n C3' O3' ADN sing 10 n n C3' C2' ADN sing 11 n n C3' H3' ADN sing 12 n n O3' HO3' ADN sing 13 n n C2' O2' ADN sing 14 n n C2' C1' ADN sing 15 n n C2' H2' ADN sing 16 n n O2' HO2' ADN sing 17 n n C1' N9 ADN sing 18 n n C1' H1' ADN sing 19 n n N9 C8 ADN sing 20 n y N9 C4 ADN sing 21 n y C8 N7 ADN doub 22 n y C8 H8 ADN sing 23 n n N7 C5 ADN sing 24 n y C5 C6 ADN sing 25 n y C5 C4 ADN doub 26 n y C6 N6 ADN sing 27 n n C6 N1 ADN doub 28 n y N6 HN61 ADN sing 29 n n N6 HN62 ADN sing 30 n n N1 C2 ADN sing 31 n y C2 N3 ADN doub 32 n y C2 H2 ADN sing 33 n n N3 C4 ADN sing 34 n y # _atom_sites.entry_id 4O0S _atom_sites.fract_transf_matrix[1][1] 0.012158 _atom_sites.fract_transf_matrix[1][2] 0.007019 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014038 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005792 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADN A 1 500 500 ADN ADN . C 3 HOH A 1 601 1 HOH HOH . C 3 HOH A 2 602 2 HOH HOH . C 3 HOH A 3 603 3 HOH HOH . C 3 HOH A 4 604 4 HOH HOH . C 3 HOH A 5 605 5 HOH HOH . C 3 HOH A 6 606 6 HOH HOH . C 3 HOH A 7 607 7 HOH HOH . C 3 HOH A 8 608 8 HOH HOH . C 3 HOH A 9 609 9 HOH HOH . C 3 HOH A 10 610 11 HOH HOH . C 3 HOH A 11 611 12 HOH HOH . C 3 HOH A 12 612 13 HOH HOH . C 3 HOH A 13 613 14 HOH HOH . C 3 HOH A 14 614 15 HOH HOH . C 3 HOH A 15 615 16 HOH HOH . C 3 HOH A 16 616 17 HOH HOH . C 3 HOH A 17 617 18 HOH HOH . C 3 HOH A 18 618 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' ADN . . . B 2 8.332 26.253 5.78 1 97.01 ? O5' ADN 500 A 1 HETATM 2 C C5' ADN . . . B 2 7.822 26.045 4.467 1 105.53 ? C5' ADN 500 A 1 HETATM 3 C C4' ADN . . . B 2 7.297 27.325 3.852 1 105.24 ? C4' ADN 500 A 1 HETATM 4 O O4' ADN . . . B 2 5.928 27.558 4.292 1 100.42 ? O4' ADN 500 A 1 HETATM 5 C C3' ADN . . . B 2 8.049 28.601 4.221 1 102.46 ? C3' ADN 500 A 1 HETATM 6 O O3' ADN . . . B 2 9.175 28.82 3.383 1 101.81 ? O3' ADN 500 A 1 HETATM 7 C C2' ADN . . . B 2 6.977 29.684 4.093 1 102.28 ? C2' ADN 500 A 1 HETATM 8 O O2' ADN . . . B 2 6.802 30.046 2.728 1 102.49 ? O2' ADN 500 A 1 HETATM 9 C C1' ADN . . . B 2 5.718 28.933 4.542 1 95.51 ? C1' ADN 500 A 1 HETATM 10 N N9 ADN . . . B 2 5.387 29.117 5.981 1 93.84 ? N9 ADN 500 A 1 HETATM 11 C C8 ADN . . . B 2 5.78 28.328 7.065 1 93.05 ? C8 ADN 500 A 1 HETATM 12 N N7 ADN . . . B 2 5.311 28.729 8.227 1 77.65 ? N7 ADN 500 A 1 HETATM 13 C C5 ADN . . . B 2 4.544 29.855 7.89 1 61.2 ? C5 ADN 500 A 1 HETATM 14 C C6 ADN . . . B 2 3.794 30.734 8.669 1 55.83 ? C6 ADN 500 A 1 HETATM 15 N N6 ADN . . . B 2 3.686 30.606 9.99 1 58.72 ? N6 ADN 500 A 1 HETATM 16 N N1 ADN . . . B 2 3.141 31.759 8.046 1 52.17 ? N1 ADN 500 A 1 HETATM 17 C C2 ADN . . . B 2 3.263 31.871 6.714 1 55.88 ? C2 ADN 500 A 1 HETATM 18 N N3 ADN . . . B 2 3.953 31.09 5.87 1 60.75 ? N3 ADN 500 A 1 HETATM 19 C C4 ADN . . . B 2 4.58 30.091 6.525 1 65.54 ? C4 ADN 500 A 1 HETATM 20 H HO5' ADN . . . B 2 8.741 25.512 6.062 1 116.41 ? HO5' ADN 500 A 1 HETATM 21 H "H5'1" ADN . . . B 2 7.092 25.388 4.509 1 126.64 ? "H5'1" ADN 500 A 1 HETATM 22 H "H5'2" ADN . . . B 2 8.541 25.689 3.899 1 126.64 ? "H5'2" ADN 500 A 1 HETATM 23 H H4' ADN . . . B 2 7.303 27.228 2.874 1 126.29 ? H4' ADN 500 A 1 HETATM 24 H H3' ADN . . . B 2 8.345 28.546 5.156 1 122.96 ? H3' ADN 500 A 1 HETATM 25 H HO3' ADN . . . B 2 9.839 29.173 3.864 1 122.18 ? HO3' ADN 500 A 1 HETATM 26 H H2' ADN . . . B 2 7.167 30.462 4.663 1 122.73 ? H2' ADN 500 A 1 HETATM 27 H HO2' ADN . . . B 2 6.918 30.926 2.636 1 122.99 ? HO2' ADN 500 A 1 HETATM 28 H H1' ADN . . . B 2 4.957 29.241 4.001 1 114.62 ? H1' ADN 500 A 1 HETATM 29 H H8 ADN . . . B 2 6.363 27.547 6.969 1 111.66 ? H8 ADN 500 A 1 HETATM 30 H HN61 ADN . . . B 2 4.288 31.023 10.542 1 70.47 ? HN61 ADN 500 A 1 HETATM 31 H HN62 ADN . . . B 2 3.008 30.102 10.348 1 70.47 ? HN62 ADN 500 A 1 HETATM 32 H H2 ADN . . . B 2 2.78 32.62 6.304 1 67.06 ? H2 ADN 500 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 32 #