data_4O0T
#
_model_server_result.job_id            2N2RV4n7Ch2UE1Mg0ix6hw 
_model_server_result.datetime_utc      '2024-11-23 08:58:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4o0t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    4O0T 
#
_exptl.entry_id    4O0T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              406.481 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-({1-(2-aminopyrimidin-4-yl)-2-[(2-methoxyethyl)amino]-1H-benzimidazol-6-yl}ethynyl)cyclohexanol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.97 
_cell.angle_gamma         90 
_cell.entry_id            4O0T 
_cell.length_a            63.656 
_cell.length_b            79.17 
_cell.length_c            66.343 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4O0T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E 2 1 
A,B,C,D,E 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C22 H26 N6 O2' 
_chem_comp.formula_weight    406.481 
_chem_comp.id                2OL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-({1-(2-aminopyrimidin-4-yl)-2-[(2-methoxyethyl)amino]-1H-benzimidazol-6-yl}ethynyl)cyclohexanol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C29 C28 2OL sing 1 n n 
C29 C24 2OL sing 2 n n 
C28 C27 2OL sing 3 n n 
C10 C9 2OL doub 4 n y 
C10 C11 2OL sing 5 n y 
O30 C24 2OL sing 6 n n 
C9 C8 2OL sing 7 n y 
C24 C23 2OL sing 8 n n 
C24 C25 2OL sing 9 n n 
C23 C22 2OL trip 10 n n 
C22 C11 2OL sing 11 n n 
C11 C12 2OL doub 12 n y 
C8 N7 2OL sing 13 n y 
C8 C13 2OL doub 14 n y 
C27 C26 2OL sing 15 n n 
N7 C6 2OL doub 16 n y 
C12 C13 2OL sing 17 n y 
C13 N14 2OL sing 18 n y 
C25 C26 2OL sing 19 n n 
C6 N14 2OL sing 20 n y 
C6 N5 2OL sing 21 n n 
N14 C15 2OL sing 22 n n 
C4 N5 2OL sing 23 n n 
C4 C3 2OL sing 24 n n 
O2 C3 2OL sing 25 n n 
O2 C1 2OL sing 26 n n 
C15 C16 2OL doub 27 n y 
C15 N20 2OL sing 28 n y 
C16 C17 2OL sing 29 n y 
N20 C19 2OL doub 30 n y 
C17 N18 2OL doub 31 n y 
C19 N18 2OL sing 32 n y 
C19 N21 2OL sing 33 n n 
C1 H1 2OL sing 34 n n 
C1 H2 2OL sing 35 n n 
C1 H3 2OL sing 36 n n 
C3 H4 2OL sing 37 n n 
C3 H5 2OL sing 38 n n 
C4 H6 2OL sing 39 n n 
C4 H7 2OL sing 40 n n 
N5 H8 2OL sing 41 n n 
C9 H9 2OL sing 42 n n 
C10 H10 2OL sing 43 n n 
C12 H11 2OL sing 44 n n 
C16 H12 2OL sing 45 n n 
C17 H13 2OL sing 46 n n 
N21 H14 2OL sing 47 n n 
N21 H15 2OL sing 48 n n 
C25 H16 2OL sing 49 n n 
C25 H17 2OL sing 50 n n 
C26 H18 2OL sing 51 n n 
C26 H19 2OL sing 52 n n 
C27 H20 2OL sing 53 n n 
C27 H21 2OL sing 54 n n 
C28 H22 2OL sing 55 n n 
C28 H23 2OL sing 56 n n 
C29 H24 2OL sing 57 n n 
C29 H25 2OL sing 58 n n 
O30 H26 2OL sing 59 n n 
#
_atom_sites.entry_id                     4O0T 
_atom_sites.fract_transf_matrix[1][1]    0.015709 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004794 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012631 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015759 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 2OL A 1 601 1 2OL LIG . 
D 3 HOH A 1 701 3 HOH HOH . 
D 3 HOH A 2 702 4 HOH HOH . 
D 3 HOH A 3 703 12 HOH HOH . 
D 3 HOH A 4 704 14 HOH HOH . 
D 3 HOH A 5 705 23 HOH HOH . 
E 3 HOH B 1 601 1 HOH HOH . 
E 3 HOH B 2 602 2 HOH HOH . 
E 3 HOH B 3 603 5 HOH HOH . 
E 3 HOH B 4 604 6 HOH HOH . 
E 3 HOH B 5 605 7 HOH HOH . 
E 3 HOH B 6 606 8 HOH HOH . 
E 3 HOH B 7 607 9 HOH HOH . 
E 3 HOH B 8 608 10 HOH HOH . 
E 3 HOH B 9 609 11 HOH HOH . 
E 3 HOH B 10 610 13 HOH HOH . 
E 3 HOH B 11 611 15 HOH HOH . 
E 3 HOH B 12 612 16 HOH HOH . 
E 3 HOH B 13 613 18 HOH HOH . 
E 3 HOH B 14 614 19 HOH HOH . 
E 3 HOH B 15 615 20 HOH HOH . 
E 3 HOH B 16 616 21 HOH HOH . 
E 3 HOH B 17 617 22 HOH HOH . 
E 3 HOH B 18 618 24 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 2OL . . . C 2 13.355 -11.834 15.513 1 77.44 ? C1 2OL 601 A 1 
HETATM 2 O O2 2OL . . . C 2 13.008 -12.591 14.352 1 78.9 ? O2 2OL 601 A 1 
HETATM 3 C C3 2OL . . . C 2 12.407 -13.86 14.626 1 79.9 ? C3 2OL 601 A 1 
HETATM 4 C C4 2OL . . . C 2 12.624 -14.775 13.416 1 79.21 ? C4 2OL 601 A 1 
HETATM 5 N N5 2OL . . . C 2 13.813 -15.612 13.615 1 76.8 ? N5 2OL 601 A 1 
HETATM 6 C C6 2OL . . . C 2 15.016 -15.351 12.992 1 76.76 ? C6 2OL 601 A 1 
HETATM 7 N N7 2OL . . . C 2 15.204 -14.545 11.974 1 76.82 ? N7 2OL 601 A 1 
HETATM 8 C C8 2OL . . . C 2 16.52 -14.533 11.624 1 74.64 ? C8 2OL 601 A 1 
HETATM 9 C C9 2OL . . . C 2 17.246 -13.859 10.626 1 73.04 ? C9 2OL 601 A 1 
HETATM 10 C C10 2OL . . . C 2 18.595 -14.04 10.508 1 70.28 ? C10 2OL 601 A 1 
HETATM 11 C C11 2OL . . . C 2 19.258 -14.914 11.373 1 68.87 ? C11 2OL 601 A 1 
HETATM 12 C C12 2OL . . . C 2 18.553 -15.584 12.369 1 70.85 ? C12 2OL 601 A 1 
HETATM 13 C C13 2OL . . . C 2 17.185 -15.409 12.508 1 73.64 ? C13 2OL 601 A 1 
HETATM 14 N N14 2OL . . . C 2 16.207 -15.921 13.368 1 76.04 ? N14 2OL 601 A 1 
HETATM 15 C C15 2OL . . . C 2 16.347 -16.826 14.433 1 75.61 ? C15 2OL 601 A 1 
HETATM 16 C C16 2OL . . . C 2 17.415 -17.72 14.562 1 73.24 ? C16 2OL 601 A 1 
HETATM 17 C C17 2OL . . . C 2 17.462 -18.574 15.653 1 73.23 ? C17 2OL 601 A 1 
HETATM 18 N N18 2OL . . . C 2 16.491 -18.531 16.552 1 75.01 ? N18 2OL 601 A 1 
HETATM 19 C C19 2OL . . . C 2 15.489 -17.676 16.411 1 75.17 ? C19 2OL 601 A 1 
HETATM 20 N N20 2OL . . . C 2 15.419 -16.845 15.379 1 76 ? N20 2OL 601 A 1 
HETATM 21 N N21 2OL . . . C 2 14.487 -17.648 17.364 1 74.87 ? N21 2OL 601 A 1 
HETATM 22 C C22 2OL . . . C 2 20.673 -15.114 11.283 1 64.81 ? C22 2OL 601 A 1 
HETATM 23 C C23 2OL . . . C 2 21.817 -15.351 11.255 1 61.68 ? C23 2OL 601 A 1 
HETATM 24 C C24 2OL . . . C 2 23.264 -15.624 11.219 1 60.21 ? C24 2OL 601 A 1 
HETATM 25 C C25 2OL . . . C 2 23.765 -15.806 12.649 1 59.96 ? C25 2OL 601 A 1 
HETATM 26 C C26 2OL . . . C 2 25.226 -16.255 12.66 1 60.18 ? C26 2OL 601 A 1 
HETATM 27 C C27 2OL . . . C 2 25.374 -17.567 11.895 1 58.7 ? C27 2OL 601 A 1 
HETATM 28 C C28 2OL . . . C 2 24.925 -17.36 10.45 1 57.79 ? C28 2OL 601 A 1 
HETATM 29 C C29 2OL . . . C 2 23.464 -16.917 10.421 1 59.09 ? C29 2OL 601 A 1 
HETATM 30 O O30 2OL . . . C 2 23.966 -14.554 10.589 1 59.2 ? O30 2OL 601 A 1 
#
_model_server_stats.io_time_ms              79 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           30 
#