data_4O0V # _model_server_result.job_id ocgdHEHRFiYTxB6Gzh9tiw _model_server_result.datetime_utc '2024-11-29 16:18:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o0v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4O0V # _exptl.entry_id 4O0V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 406.481 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-({1-(2-aminopyrimidin-4-yl)-2-[(2-methoxyethyl)amino]-1H-benzimidazol-6-yl}ethynyl)cyclohexanol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O0V _cell.length_a 65.473 _cell.length_b 65.473 _cell.length_c 180.532 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O0V _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 175 A LYS 473 1_555 A N SEP 176 A SEP 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C SEP 176 A SEP 474 1_555 A N LEU 177 A LEU 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C22 H26 N6 O2' _chem_comp.formula_weight 406.481 _chem_comp.id 2OL _chem_comp.mon_nstd_flag . _chem_comp.name 1-({1-(2-aminopyrimidin-4-yl)-2-[(2-methoxyethyl)amino]-1H-benzimidazol-6-yl}ethynyl)cyclohexanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 C28 2OL sing 1 n n C29 C24 2OL sing 2 n n C28 C27 2OL sing 3 n n C10 C9 2OL doub 4 n y C10 C11 2OL sing 5 n y O30 C24 2OL sing 6 n n C9 C8 2OL sing 7 n y C24 C23 2OL sing 8 n n C24 C25 2OL sing 9 n n C23 C22 2OL trip 10 n n C22 C11 2OL sing 11 n n C11 C12 2OL doub 12 n y C8 N7 2OL sing 13 n y C8 C13 2OL doub 14 n y C27 C26 2OL sing 15 n n N7 C6 2OL doub 16 n y C12 C13 2OL sing 17 n y C13 N14 2OL sing 18 n y C25 C26 2OL sing 19 n n C6 N14 2OL sing 20 n y C6 N5 2OL sing 21 n n N14 C15 2OL sing 22 n n C4 N5 2OL sing 23 n n C4 C3 2OL sing 24 n n O2 C3 2OL sing 25 n n O2 C1 2OL sing 26 n n C15 C16 2OL doub 27 n y C15 N20 2OL sing 28 n y C16 C17 2OL sing 29 n y N20 C19 2OL doub 30 n y C17 N18 2OL doub 31 n y C19 N18 2OL sing 32 n y C19 N21 2OL sing 33 n n C1 H1 2OL sing 34 n n C1 H2 2OL sing 35 n n C1 H3 2OL sing 36 n n C3 H4 2OL sing 37 n n C3 H5 2OL sing 38 n n C4 H6 2OL sing 39 n n C4 H7 2OL sing 40 n n N5 H8 2OL sing 41 n n C9 H9 2OL sing 42 n n C10 H10 2OL sing 43 n n C12 H11 2OL sing 44 n n C16 H12 2OL sing 45 n n C17 H13 2OL sing 46 n n N21 H14 2OL sing 47 n n N21 H15 2OL sing 48 n n C25 H16 2OL sing 49 n n C25 H17 2OL sing 50 n n C26 H18 2OL sing 51 n n C26 H19 2OL sing 52 n n C27 H20 2OL sing 53 n n C27 H21 2OL sing 54 n n C28 H22 2OL sing 55 n n C28 H23 2OL sing 56 n n C29 H24 2OL sing 57 n n C29 H25 2OL sing 58 n n O30 H26 2OL sing 59 n n # _atom_sites.entry_id 4O0V _atom_sites.fract_transf_matrix[1][1] 0.015273 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015273 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005539 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2OL A 1 601 1 2OL LIG . C 3 HOH A 1 701 1 HOH HOH . C 3 HOH A 2 702 2 HOH HOH . C 3 HOH A 3 703 4 HOH HOH . C 3 HOH A 4 704 5 HOH HOH . C 3 HOH A 5 705 6 HOH HOH . C 3 HOH A 6 706 7 HOH HOH . C 3 HOH A 7 707 9 HOH HOH . C 3 HOH A 8 708 10 HOH HOH . C 3 HOH A 9 709 11 HOH HOH . C 3 HOH A 10 710 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 2OL . . . B 2 -40.926 11.353 -11.27 1 88.9 ? C1 2OL 601 A 1 HETATM 2 O O2 2OL . . . B 2 -40.483 12.588 -11.832 1 89.3 ? O2 2OL 601 A 1 HETATM 3 C C3 2OL . . . B 2 -39.469 13.249 -11.07 1 85.74 ? C3 2OL 601 A 1 HETATM 4 C C4 2OL . . . B 2 -38.785 14.299 -11.951 1 83.2 ? C4 2OL 601 A 1 HETATM 5 N N5 2OL . . . B 2 -38.365 13.669 -13.206 1 79.96 ? N5 2OL 601 A 1 HETATM 6 C C6 2OL . . . B 2 -37.025 13.441 -13.432 1 77.44 ? C6 2OL 601 A 1 HETATM 7 N N7 2OL . . . B 2 -36.052 14.134 -12.892 1 77.65 ? N7 2OL 601 A 1 HETATM 8 C C8 2OL . . . B 2 -34.854 13.659 -13.32 1 73.1 ? C8 2OL 601 A 1 HETATM 9 C C9 2OL . . . B 2 -33.533 14.033 -13.055 1 68.56 ? C9 2OL 601 A 1 HETATM 10 C C10 2OL . . . B 2 -32.502 13.358 -13.643 1 67.18 ? C10 2OL 601 A 1 HETATM 11 C C11 2OL . . . B 2 -32.758 12.292 -14.511 1 66.42 ? C11 2OL 601 A 1 HETATM 12 C C12 2OL . . . B 2 -34.064 11.907 -14.78 1 67.89 ? C12 2OL 601 A 1 HETATM 13 C C13 2OL . . . B 2 -35.122 12.584 -14.193 1 71.77 ? C13 2OL 601 A 1 HETATM 14 N N14 2OL . . . B 2 -36.511 12.464 -14.25 1 73.77 ? N14 2OL 601 A 1 HETATM 15 C C15 2OL . . . B 2 -37.259 11.532 -14.988 1 69.7 ? C15 2OL 601 A 1 HETATM 16 C C16 2OL . . . B 2 -36.762 10.961 -16.166 1 62.57 ? C16 2OL 601 A 1 HETATM 17 C C17 2OL . . . B 2 -37.542 10.045 -16.848 1 59.86 ? C17 2OL 601 A 1 HETATM 18 N N18 2OL . . . B 2 -38.74 9.734 -16.373 1 58.16 ? N18 2OL 601 A 1 HETATM 19 C C19 2OL . . . B 2 -39.191 10.286 -15.257 1 63.92 ? C19 2OL 601 A 1 HETATM 20 N N20 2OL . . . B 2 -38.471 11.167 -14.571 1 67.99 ? N20 2OL 601 A 1 HETATM 21 N N21 2OL . . . B 2 -40.446 9.926 -14.798 1 66.67 ? N21 2OL 601 A 1 HETATM 22 C C22 2OL . . . B 2 -31.668 11.592 -15.129 1 66.59 ? C22 2OL 601 A 1 HETATM 23 C C23 2OL . . . B 2 -30.794 10.998 -15.635 1 67.54 ? C23 2OL 601 A 1 HETATM 24 C C24 2OL . . . B 2 -29.695 10.252 -16.278 1 65.18 ? C24 2OL 601 A 1 HETATM 25 C C25 2OL . . . B 2 -30.023 8.758 -16.279 1 64.36 ? C25 2OL 601 A 1 HETATM 26 C C26 2OL . . . B 2 -28.97 7.969 -17.081 1 64.49 ? C26 2OL 601 A 1 HETATM 27 C C27 2OL . . . B 2 -28.888 8.506 -18.51 1 66.19 ? C27 2OL 601 A 1 HETATM 28 C C28 2OL . . . B 2 -28.48 9.976 -18.469 1 64.91 ? C28 2OL 601 A 1 HETATM 29 C C29 2OL . . . B 2 -29.553 10.768 -17.725 1 63.74 ? C29 2OL 601 A 1 HETATM 30 O O30 2OL . . . B 2 -28.479 10.499 -15.581 1 63.08 ? O30 2OL 601 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 30 #