data_4O0X # _model_server_result.job_id D_OsQAeAbPydFInnsqqROw _model_server_result.datetime_utc '2024-10-11 05:29:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o0x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4O0X # _exptl.entry_id 4O0X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.402 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{[1-(4-amino-1,3,5-triazin-2-yl)-2-methyl-1H-benzimidazol-6-yl]ethynyl}cyclohexanol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O0X _cell.length_a 64.877 _cell.length_b 64.877 _cell.length_c 184.01 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O0X _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 175 A LYS 473 1_555 A N SEP 176 A SEP 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C SEP 176 A SEP 474 1_555 A N LEU 177 A LEU 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C19 H20 N6 O' _chem_comp.formula_weight 348.402 _chem_comp.id 2OQ _chem_comp.mon_nstd_flag . _chem_comp.name 1-{[1-(4-amino-1,3,5-triazin-2-yl)-2-methyl-1H-benzimidazol-6-yl]ethynyl}cyclohexanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C4 2OQ sing 1 n y N3 C2 2OQ doub 2 n y C1 C2 2OQ sing 3 n n C5 C4 2OQ doub 4 n y C5 C6 2OQ sing 5 n y C4 C9 2OQ sing 6 n y C2 N10 2OQ sing 7 n y C6 C7 2OQ doub 8 n y C9 N10 2OQ sing 9 n y C9 C8 2OQ doub 10 n y N10 C11 2OQ sing 11 n n C7 C8 2OQ sing 12 n y C7 C18 2OQ sing 13 n n N16 C11 2OQ doub 14 n y N16 C15 2OQ sing 15 n y N17 C15 2OQ sing 16 n n C11 N12 2OQ sing 17 n y C18 C19 2OQ trip 18 n n C15 N14 2OQ doub 19 n y O26 C20 2OQ sing 20 n n C19 C20 2OQ sing 21 n n N12 C13 2OQ doub 22 n y C21 C20 2OQ sing 23 n n C21 C22 2OQ sing 24 n n C20 C25 2OQ sing 25 n n N14 C13 2OQ sing 26 n y C22 C23 2OQ sing 27 n n C25 C24 2OQ sing 28 n n C23 C24 2OQ sing 29 n n C1 H1 2OQ sing 30 n n C1 H2 2OQ sing 31 n n C1 H3 2OQ sing 32 n n C5 H4 2OQ sing 33 n n C6 H5 2OQ sing 34 n n C8 H6 2OQ sing 35 n n C13 H7 2OQ sing 36 n n N17 H8 2OQ sing 37 n n N17 H9 2OQ sing 38 n n C21 H10 2OQ sing 39 n n C21 H11 2OQ sing 40 n n C22 H12 2OQ sing 41 n n C22 H13 2OQ sing 42 n n C23 H14 2OQ sing 43 n n C23 H15 2OQ sing 44 n n C24 H16 2OQ sing 45 n n C24 H17 2OQ sing 46 n n C25 H18 2OQ sing 47 n n C25 H19 2OQ sing 48 n n O26 H20 2OQ sing 49 n n # _atom_sites.entry_id 4O0X _atom_sites.fract_transf_matrix[1][1] 0.015414 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005434 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2OQ A 1 601 1 2OQ LIG . C 3 HOH A 1 701 2 HOH HOH . C 3 HOH A 2 702 3 HOH HOH . C 3 HOH A 3 703 4 HOH HOH . C 3 HOH A 4 704 6 HOH HOH . C 3 HOH A 5 705 7 HOH HOH . C 3 HOH A 6 706 8 HOH HOH . C 3 HOH A 7 707 9 HOH HOH . C 3 HOH A 8 708 10 HOH HOH . C 3 HOH A 9 709 11 HOH HOH . C 3 HOH A 10 710 12 HOH HOH . C 3 HOH A 11 711 13 HOH HOH . C 3 HOH A 12 712 15 HOH HOH . C 3 HOH A 13 713 16 HOH HOH . C 3 HOH A 14 714 17 HOH HOH . C 3 HOH A 15 715 18 HOH HOH . C 3 HOH A 16 716 19 HOH HOH . C 3 HOH A 17 717 20 HOH HOH . C 3 HOH A 18 718 21 HOH HOH . C 3 HOH A 19 719 22 HOH HOH . C 3 HOH A 20 720 23 HOH HOH . C 3 HOH A 21 721 25 HOH HOH . C 3 HOH A 22 722 26 HOH HOH . C 3 HOH A 23 723 27 HOH HOH . C 3 HOH A 24 724 28 HOH HOH . C 3 HOH A 25 725 30 HOH HOH . C 3 HOH A 26 726 31 HOH HOH . C 3 HOH A 27 727 32 HOH HOH . C 3 HOH A 28 728 33 HOH HOH . C 3 HOH A 29 729 34 HOH HOH . C 3 HOH A 30 730 35 HOH HOH . C 3 HOH A 31 731 36 HOH HOH . C 3 HOH A 32 732 37 HOH HOH . C 3 HOH A 33 733 38 HOH HOH . C 3 HOH A 34 734 40 HOH HOH . C 3 HOH A 35 735 41 HOH HOH . C 3 HOH A 36 736 42 HOH HOH . C 3 HOH A 37 737 43 HOH HOH . C 3 HOH A 38 738 44 HOH HOH . C 3 HOH A 39 739 45 HOH HOH . C 3 HOH A 40 740 46 HOH HOH . C 3 HOH A 41 741 47 HOH HOH . C 3 HOH A 42 742 48 HOH HOH . C 3 HOH A 43 743 49 HOH HOH . C 3 HOH A 44 744 50 HOH HOH . C 3 HOH A 45 745 51 HOH HOH . C 3 HOH A 46 746 52 HOH HOH . C 3 HOH A 47 747 53 HOH HOH . C 3 HOH A 48 748 54 HOH HOH . C 3 HOH A 49 749 55 HOH HOH . C 3 HOH A 50 750 56 HOH HOH . C 3 HOH A 51 751 57 HOH HOH . C 3 HOH A 52 752 58 HOH HOH . C 3 HOH A 53 753 59 HOH HOH . C 3 HOH A 54 754 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 2OQ . . . B 2 -18.785 -4.139 13.368 1 27.79 ? C1 2OQ 601 A 1 HETATM 2 C C2 2OQ . . . B 2 -19.056 -2.69 13.702 1 31.68 ? C2 2OQ 601 A 1 HETATM 3 N N3 2OQ . . . B 2 -18.374 -1.715 13.177 1 31 ? N3 2OQ 601 A 1 HETATM 4 C C4 2OQ . . . B 2 -18.817 -0.523 13.642 1 29.53 ? C4 2OQ 601 A 1 HETATM 5 C C5 2OQ . . . B 2 -18.431 0.8 13.395 1 29.03 ? C5 2OQ 601 A 1 HETATM 6 C C6 2OQ . . . B 2 -19.073 1.823 14.019 1 32.08 ? C6 2OQ 601 A 1 HETATM 7 C C7 2OQ . . . B 2 -20.121 1.572 14.914 1 32.44 ? C7 2OQ 601 A 1 HETATM 8 C C8 2OQ . . . B 2 -20.513 0.258 15.175 1 30.85 ? C8 2OQ 601 A 1 HETATM 9 C C9 2OQ . . . B 2 -19.865 -0.8 14.541 1 31.11 ? C9 2OQ 601 A 1 HETATM 10 N N10 2OQ . . . B 2 -20.003 -2.189 14.57 1 30.41 ? N10 2OQ 601 A 1 HETATM 11 C C11 2OQ . . . B 2 -20.941 -2.891 15.342 1 24.91 ? C11 2OQ 601 A 1 HETATM 12 N N12 2OQ . . . B 2 -21.433 -2.35 16.456 1 24.33 ? N12 2OQ 601 A 1 HETATM 13 C C13 2OQ . . . B 2 -22.326 -2.995 17.191 1 27.29 ? C13 2OQ 601 A 1 HETATM 14 N N14 2OQ . . . B 2 -22.744 -4.197 16.83 1 29.63 ? N14 2OQ 601 A 1 HETATM 15 C C15 2OQ . . . B 2 -22.266 -4.752 15.714 1 29.83 ? C15 2OQ 601 A 1 HETATM 16 N N16 2OQ . . . B 2 -21.37 -4.093 14.982 1 26.5 ? N16 2OQ 601 A 1 HETATM 17 N N17 2OQ . . . B 2 -22.697 -6.007 15.313 1 28.49 ? N17 2OQ 601 A 1 HETATM 18 C C18 2OQ . . . B 2 -20.77 2.685 15.547 1 29.06 ? C18 2OQ 601 A 1 HETATM 19 C C19 2OQ . . . B 2 -21.295 3.599 16.068 1 28.03 ? C19 2OQ 601 A 1 HETATM 20 C C20 2OQ . . . B 2 -21.953 4.757 16.702 1 32.06 ? C20 2OQ 601 A 1 HETATM 21 C C21 2OQ . . . B 2 -23.461 4.53 16.649 1 29.6 ? C21 2OQ 601 A 1 HETATM 22 C C22 2OQ . . . B 2 -24.177 5.747 17.234 1 30.54 ? C22 2OQ 601 A 1 HETATM 23 C C23 2OQ . . . B 2 -23.733 5.922 18.683 1 31.27 ? C23 2OQ 601 A 1 HETATM 24 C C24 2OQ . . . B 2 -22.218 6.137 18.739 1 34.38 ? C24 2OQ 601 A 1 HETATM 25 C C25 2OQ . . . B 2 -21.503 4.909 18.167 1 34.77 ? C25 2OQ 601 A 1 HETATM 26 O O26 2OQ . . . B 2 -21.66 5.958 15.993 1 32.55 ? O26 2OQ 601 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 26 #