data_4O0Y # _model_server_result.job_id nJGAVYiZMqaOQ8zOr-S_Sg _model_server_result.datetime_utc '2024-11-27 01:09:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o0y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4O0Y # _exptl.entry_id 4O0Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 337.379 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[1-(4-amino-1,3,5-triazin-2-yl)-2-(ethylamino)-1H-benzimidazol-6-yl]-2-methylbut-3-yn-2-ol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O0Y _cell.length_a 63.988 _cell.length_b 63.988 _cell.length_c 186.751 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O0Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 175 A LYS 473 1_555 A N SEP 176 A SEP 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C SEP 176 A SEP 474 1_555 A N LEU 177 A LEU 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C17 H19 N7 O' _chem_comp.formula_weight 337.379 _chem_comp.id 2OO _chem_comp.mon_nstd_flag . _chem_comp.name 4-[1-(4-amino-1,3,5-triazin-2-yl)-2-(ethylamino)-1H-benzimidazol-6-yl]-2-methylbut-3-yn-2-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 2OO sing 1 n n C2 N3 2OO sing 2 n n C7 C6 2OO doub 3 n y C7 C8 2OO sing 4 n y N5 C6 2OO sing 5 n y N5 C4 2OO doub 6 n y C6 C11 2OO sing 7 n y C8 C9 2OO doub 8 n y N3 C4 2OO sing 9 n n C4 N12 2OO sing 10 n y C11 N12 2OO sing 11 n y C11 C10 2OO doub 12 n y C9 C10 2OO sing 13 n y C9 C20 2OO sing 14 n n N12 C13 2OO sing 15 n n C20 C21 2OO trip 16 n n N14 C13 2OO doub 17 n y N14 C15 2OO sing 18 n y C13 N18 2OO sing 19 n y O25 C22 2OO sing 20 n n C21 C22 2OO sing 21 n n C15 N16 2OO doub 22 n y C22 C23 2OO sing 23 n n C22 C24 2OO sing 24 n n N18 C17 2OO doub 25 n y N16 C17 2OO sing 26 n y C17 N19 2OO sing 27 n n C1 H1 2OO sing 28 n n C1 H2 2OO sing 29 n n C1 H3 2OO sing 30 n n C2 H4 2OO sing 31 n n C2 H5 2OO sing 32 n n N3 H6 2OO sing 33 n n C7 H7 2OO sing 34 n n C8 H8 2OO sing 35 n n C10 H9 2OO sing 36 n n C15 H10 2OO sing 37 n n N19 H11 2OO sing 38 n n N19 H12 2OO sing 39 n n C23 H13 2OO sing 40 n n C23 H14 2OO sing 41 n n C23 H15 2OO sing 42 n n C24 H16 2OO sing 43 n n C24 H17 2OO sing 44 n n C24 H18 2OO sing 45 n n O25 H19 2OO sing 46 n n # _atom_sites.entry_id 4O0Y _atom_sites.fract_transf_matrix[1][1] 0.015628 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015628 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005355 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2OO A 1 601 1 2OO LIG . C 3 HOH A 1 701 1 HOH HOH . C 3 HOH A 2 702 2 HOH HOH . C 3 HOH A 3 703 3 HOH HOH . C 3 HOH A 4 704 4 HOH HOH . C 3 HOH A 5 705 5 HOH HOH . C 3 HOH A 6 706 6 HOH HOH . C 3 HOH A 7 707 7 HOH HOH . C 3 HOH A 8 708 8 HOH HOH . C 3 HOH A 9 709 9 HOH HOH . C 3 HOH A 10 710 10 HOH HOH . C 3 HOH A 11 711 11 HOH HOH . C 3 HOH A 12 712 12 HOH HOH . C 3 HOH A 13 713 13 HOH HOH . C 3 HOH A 14 714 14 HOH HOH . C 3 HOH A 15 715 15 HOH HOH . C 3 HOH A 16 716 16 HOH HOH . C 3 HOH A 17 717 17 HOH HOH . C 3 HOH A 18 718 18 HOH HOH . C 3 HOH A 19 719 19 HOH HOH . C 3 HOH A 20 720 20 HOH HOH . C 3 HOH A 21 721 21 HOH HOH . C 3 HOH A 22 722 22 HOH HOH . C 3 HOH A 23 723 23 HOH HOH . C 3 HOH A 24 724 24 HOH HOH . C 3 HOH A 25 725 25 HOH HOH . C 3 HOH A 26 726 26 HOH HOH . C 3 HOH A 27 727 27 HOH HOH . C 3 HOH A 28 728 28 HOH HOH . C 3 HOH A 29 729 29 HOH HOH . C 3 HOH A 30 730 30 HOH HOH . C 3 HOH A 31 731 31 HOH HOH . C 3 HOH A 32 732 32 HOH HOH . C 3 HOH A 33 733 33 HOH HOH . C 3 HOH A 34 734 34 HOH HOH . C 3 HOH A 35 735 35 HOH HOH . C 3 HOH A 36 736 36 HOH HOH . C 3 HOH A 37 737 37 HOH HOH . C 3 HOH A 38 738 38 HOH HOH . C 3 HOH A 39 739 39 HOH HOH . C 3 HOH A 40 740 40 HOH HOH . C 3 HOH A 41 741 41 HOH HOH . C 3 HOH A 42 742 42 HOH HOH . C 3 HOH A 43 743 43 HOH HOH . C 3 HOH A 44 744 44 HOH HOH . C 3 HOH A 45 745 45 HOH HOH . C 3 HOH A 46 746 46 HOH HOH . C 3 HOH A 47 747 47 HOH HOH . C 3 HOH A 48 748 48 HOH HOH . C 3 HOH A 49 749 49 HOH HOH . C 3 HOH A 50 750 50 HOH HOH . C 3 HOH A 51 751 51 HOH HOH . C 3 HOH A 52 752 52 HOH HOH . C 3 HOH A 53 753 53 HOH HOH . C 3 HOH A 54 754 54 HOH HOH . C 3 HOH A 55 755 55 HOH HOH . C 3 HOH A 56 756 56 HOH HOH . C 3 HOH A 57 757 57 HOH HOH . C 3 HOH A 58 758 58 HOH HOH . C 3 HOH A 59 759 59 HOH HOH . C 3 HOH A 60 760 60 HOH HOH . C 3 HOH A 61 761 61 HOH HOH . C 3 HOH A 62 762 62 HOH HOH . C 3 HOH A 63 763 63 HOH HOH . C 3 HOH A 64 764 64 HOH HOH . C 3 HOH A 65 765 65 HOH HOH . C 3 HOH A 66 766 66 HOH HOH . C 3 HOH A 67 767 67 HOH HOH . C 3 HOH A 68 768 68 HOH HOH . C 3 HOH A 69 769 69 HOH HOH . C 3 HOH A 70 770 70 HOH HOH . C 3 HOH A 71 771 71 HOH HOH . C 3 HOH A 72 772 72 HOH HOH . C 3 HOH A 73 773 73 HOH HOH . C 3 HOH A 74 774 74 HOH HOH . C 3 HOH A 75 775 75 HOH HOH . C 3 HOH A 76 776 76 HOH HOH . C 3 HOH A 77 777 77 HOH HOH . C 3 HOH A 78 778 78 HOH HOH . C 3 HOH A 79 779 79 HOH HOH . C 3 HOH A 80 780 80 HOH HOH . C 3 HOH A 81 781 81 HOH HOH . C 3 HOH A 82 782 82 HOH HOH . C 3 HOH A 83 783 83 HOH HOH . C 3 HOH A 84 784 84 HOH HOH . C 3 HOH A 85 785 85 HOH HOH . C 3 HOH A 86 786 86 HOH HOH . C 3 HOH A 87 787 87 HOH HOH . C 3 HOH A 88 788 88 HOH HOH . C 3 HOH A 89 789 89 HOH HOH . C 3 HOH A 90 790 90 HOH HOH . C 3 HOH A 91 791 91 HOH HOH . C 3 HOH A 92 792 92 HOH HOH . C 3 HOH A 93 793 93 HOH HOH . C 3 HOH A 94 794 94 HOH HOH . C 3 HOH A 95 795 95 HOH HOH . C 3 HOH A 96 796 96 HOH HOH . C 3 HOH A 97 797 97 HOH HOH . C 3 HOH A 98 798 98 HOH HOH . C 3 HOH A 99 799 99 HOH HOH . C 3 HOH A 100 800 100 HOH HOH . C 3 HOH A 101 801 101 HOH HOH . C 3 HOH A 102 802 102 HOH HOH . C 3 HOH A 103 803 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 2OO . . . B 2 12.722 -36.482 11.648 1 25.62 ? C1 2OO 601 A 1 HETATM 2 C C2 2OO . . . B 2 13.637 -36.305 12.863 1 28.82 ? C2 2OO 601 A 1 HETATM 3 N N3 2OO . . . B 2 12.944 -35.582 13.945 1 24.29 ? N3 2OO 601 A 1 HETATM 4 C C4 2OO . . . B 2 13.007 -34.203 14.056 1 22.9 ? C4 2OO 601 A 1 HETATM 5 N N5 2OO . . . B 2 13.823 -33.412 13.401 1 17.22 ? N5 2OO 601 A 1 HETATM 6 C C6 2OO . . . B 2 13.596 -32.114 13.765 1 16.51 ? C6 2OO 601 A 1 HETATM 7 C C7 2OO . . . B 2 14.166 -30.888 13.381 1 16.73 ? C7 2OO 601 A 1 HETATM 8 C C8 2OO . . . B 2 13.735 -29.705 13.938 1 18.14 ? C8 2OO 601 A 1 HETATM 9 C C9 2OO . . . B 2 12.698 -29.709 14.882 1 20.99 ? C9 2OO 601 A 1 HETATM 10 C C10 2OO . . . B 2 12.121 -30.92 15.27 1 13.43 ? C10 2OO 601 A 1 HETATM 11 C C11 2OO . . . B 2 12.562 -32.118 14.724 1 13.03 ? C11 2OO 601 A 1 HETATM 12 N N12 2OO . . . B 2 12.206 -33.454 14.888 1 20.25 ? N12 2OO 601 A 1 HETATM 13 C C13 2OO . . . B 2 11.238 -33.954 15.754 1 18.14 ? C13 2OO 601 A 1 HETATM 14 N N14 2OO . . . B 2 10.891 -35.248 15.73 1 17.18 ? N14 2OO 601 A 1 HETATM 15 C C15 2OO . . . B 2 9.974 -35.714 16.579 1 26.77 ? C15 2OO 601 A 1 HETATM 16 N N16 2OO . . . B 2 9.406 -34.89 17.461 1 20.8 ? N16 2OO 601 A 1 HETATM 17 C C17 2OO . . . B 2 9.768 -33.596 17.488 1 16.24 ? C17 2OO 601 A 1 HETATM 18 N N18 2OO . . . B 2 10.681 -33.135 16.646 1 16.28 ? N18 2OO 601 A 1 HETATM 19 N N19 2OO . . . B 2 9.207 -32.711 18.374 1 17.09 ? N19 2OO 601 A 1 HETATM 20 C C20 2OO . . . B 2 12.232 -28.485 15.474 1 22.42 ? C20 2OO 601 A 1 HETATM 21 C C21 2OO . . . B 2 11.833 -27.489 15.954 1 18.09 ? C21 2OO 601 A 1 HETATM 22 C C22 2OO . . . B 2 11.271 -26.279 16.588 1 23.96 ? C22 2OO 601 A 1 HETATM 23 C C23 2OO . . . B 2 9.761 -26.506 16.736 1 16.52 ? C23 2OO 601 A 1 HETATM 24 C C24 2OO . . . B 2 11.923 -26.074 17.952 1 17.97 ? C24 2OO 601 A 1 HETATM 25 O O25 2OO . . . B 2 11.427 -25.106 15.776 1 23.33 ? O25 2OO 601 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #