data_4O1L
#
_model_server_result.job_id            Hg664UyVqq5lAbyY1QXTnQ 
_model_server_result.datetime_utc      '2024-11-30 04:20:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4o1l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":403}' 
#
_entry.id    4O1L 
#
_exptl.entry_id    4O1L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              290.275 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-ethynyl-7-(beta-D-ribofuranosyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4O1L 
_cell.length_a            67.31 
_cell.length_b            156.59 
_cell.length_c            58.21 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4O1L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
PISA monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K 1 1 
A,C,D,E,F,J 2 1 
B,G,H,I,K 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG1 THR 67 A THR 66 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? 
metalc ? metalc2 D MG MG . A MG 402 1_555 J O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? 
metalc ? metalc3 D MG MG . A MG 402 1_555 J O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc4 D MG MG . A MG 402 1_555 J O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc5 D MG MG . A MG 402 1_555 J O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc6 D MG MG . A MG 402 1_555 J O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc7 B OG1 THR 67 B THR 66 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? 
metalc ? metalc8 H MG MG . B MG 402 1_555 K O HOH . B HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc9 H MG MG . B MG 402 1_555 K O HOH . B HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? 
metalc ? metalc10 H MG MG . B MG 402 1_555 K O HOH . B HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? 
metalc ? metalc11 H MG MG . B MG 402 1_555 K O HOH . B HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
#
_chem_comp.formula           'C13 H14 N4 O4' 
_chem_comp.formula_weight    290.275 
_chem_comp.id                HO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-ethynyl-7-(beta-D-ribofuranosyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C11 C10 HO4 trip 150 n n 
O2' C2' HO4 sing 151 n n 
C10 C7 HO4 sing 152 n n 
C2' C3' HO4 sing 153 n n 
C2' C1' HO4 sing 154 n n 
C7 C8 HO4 doub 155 n y 
C7 C5 HO4 sing 156 n y 
C8 N9 HO4 sing 157 n y 
C3' O3' HO4 sing 158 n n 
C3' C4' HO4 sing 159 n n 
N6 C6 HO4 sing 160 n n 
C5 C6 HO4 sing 161 n y 
C5 C4 HO4 doub 162 n y 
N9 C1' HO4 sing 163 n n 
N9 C4 HO4 sing 164 n y 
C1' O4' HO4 sing 165 n n 
C6 N1 HO4 doub 166 n y 
C4 N3 HO4 sing 167 n y 
C4' C5' HO4 sing 168 n n 
C4' O4' HO4 sing 169 n n 
C5' O5' HO4 sing 170 n n 
N1 C2 HO4 sing 171 n y 
N3 C2 HO4 doub 172 n y 
C11 H1 HO4 sing 173 n n 
C8 H2 HO4 sing 174 n n 
N6 H3 HO4 sing 175 n n 
N6 H4 HO4 sing 176 n n 
C2 H5 HO4 sing 177 n n 
C1' H6 HO4 sing 178 n n 
C4' H7 HO4 sing 179 n n 
C5' H8 HO4 sing 180 n n 
C5' H9 HO4 sing 181 n n 
O5' H10 HO4 sing 182 n n 
C3' H11 HO4 sing 183 n n 
O3' H12 HO4 sing 184 n n 
C2' H13 HO4 sing 185 n n 
O2' H14 HO4 sing 186 n n 
#
_atom_sites.entry_id                     4O1L 
_atom_sites.fract_transf_matrix[1][1]    0.014857 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006386 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017179 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 401 3 MG MG . 
D 2 MG A 1 402 4 MG MG . 
E 3 HO4 A 1 403 1 HO4 H04 . 
F 3 HO4 A 1 404 2 HO4 H04 . 
G 2 MG B 1 401 1 MG MG . 
H 2 MG B 1 402 2 MG MG . 
I 3 HO4 B 1 403 3 HO4 H04 . 
J 4 HOH A 1 501 10 HOH HOH . 
J 4 HOH A 2 502 12 HOH HOH . 
J 4 HOH A 3 503 13 HOH HOH . 
J 4 HOH A 4 504 14 HOH HOH . 
J 4 HOH A 5 505 15 HOH HOH . 
J 4 HOH A 6 506 17 HOH HOH . 
J 4 HOH A 7 507 18 HOH HOH . 
J 4 HOH A 8 508 19 HOH HOH . 
J 4 HOH A 9 509 20 HOH HOH . 
J 4 HOH A 10 510 21 HOH HOH . 
J 4 HOH A 11 511 22 HOH HOH . 
J 4 HOH A 12 512 23 HOH HOH . 
J 4 HOH A 13 513 27 HOH HOH . 
J 4 HOH A 14 514 28 HOH HOH . 
J 4 HOH A 15 515 29 HOH HOH . 
J 4 HOH A 16 516 35 HOH HOH . 
J 4 HOH A 17 517 36 HOH HOH . 
J 4 HOH A 18 518 37 HOH HOH . 
J 4 HOH A 19 519 39 HOH HOH . 
K 4 HOH B 1 501 1 HOH HOH . 
K 4 HOH B 2 502 2 HOH HOH . 
K 4 HOH B 3 503 3 HOH HOH . 
K 4 HOH B 4 504 4 HOH HOH . 
K 4 HOH B 5 505 5 HOH HOH . 
K 4 HOH B 6 506 6 HOH HOH . 
K 4 HOH B 7 507 7 HOH HOH . 
K 4 HOH B 8 508 8 HOH HOH . 
K 4 HOH B 9 509 9 HOH HOH . 
K 4 HOH B 10 510 11 HOH HOH . 
K 4 HOH B 11 511 16 HOH HOH . 
K 4 HOH B 12 512 24 HOH HOH . 
K 4 HOH B 13 513 25 HOH HOH . 
K 4 HOH B 14 514 26 HOH HOH . 
K 4 HOH B 15 515 30 HOH HOH . 
K 4 HOH B 16 516 31 HOH HOH . 
K 4 HOH B 17 517 32 HOH HOH . 
K 4 HOH B 18 518 33 HOH HOH . 
K 4 HOH B 19 519 34 HOH HOH . 
K 4 HOH B 20 520 38 HOH HOH . 
K 4 HOH B 21 521 40 HOH HOH . 
K 4 HOH B 22 522 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 HO4 . . . E 3 16.21 22.557 14.003 1 23.3 ? C11 HO4 403 A 1 
HETATM 2 C C10 HO4 . . . E 3 16.605 21.684 14.554 1 23.23 ? C10 HO4 403 A 1 
HETATM 3 C C7 HO4 . . . E 3 17.114 20.655 15.104 1 23.89 ? C7 HO4 403 A 1 
HETATM 4 C C8 HO4 . . . E 3 18.451 20.616 15.138 1 25.67 ? C8 HO4 403 A 1 
HETATM 5 C C5 HO4 . . . E 3 16.563 19.618 15.773 1 24.64 ? C5 HO4 403 A 1 
HETATM 6 C C6 HO4 . . . E 3 15.292 19.174 16.076 1 23.26 ? C6 HO4 403 A 1 
HETATM 7 N N6 HO4 . . . E 3 14.226 19.861 15.654 1 21.65 ? N6 HO4 403 A 1 
HETATM 8 N N1 HO4 . . . E 3 15.102 18.066 16.781 1 22.12 ? N1 HO4 403 A 1 
HETATM 9 C C2 HO4 . . . E 3 16.217 17.335 17.199 1 23.58 ? C2 HO4 403 A 1 
HETATM 10 N N3 HO4 . . . E 3 17.487 17.77 16.841 1 22.45 ? N3 HO4 403 A 1 
HETATM 11 C C4 HO4 . . . E 3 17.64 18.901 16.182 1 23.92 ? C4 HO4 403 A 1 
HETATM 12 N N9 HO4 . . . E 3 18.774 19.508 15.786 1 27.68 ? N9 HO4 403 A 1 
HETATM 13 C C1' HO4 . . . E 3 20.119 18.973 16.05 1 28.02 ? C1' HO4 403 A 1 
HETATM 14 O O4' HO4 . . . E 3 20.875 19.888 16.759 1 31.2 ? O4' HO4 403 A 1 
HETATM 15 C C4' HO4 . . . E 3 22.268 19.405 16.598 1 28.99 ? C4' HO4 403 A 1 
HETATM 16 C C5' HO4 . . . E 3 23.253 20.509 16.736 1 25.91 ? C5' HO4 403 A 1 
HETATM 17 O O5' HO4 . . . E 3 23.418 20.638 18.118 1 23.98 ? O5' HO4 403 A 1 
HETATM 18 C C3' HO4 . . . E 3 22.327 18.892 15.177 1 29.04 ? C3' HO4 403 A 1 
HETATM 19 O O3' HO4 . . . E 3 22.933 17.6 15.198 1 30.32 ? O3' HO4 403 A 1 
HETATM 20 C C2' HO4 . . . E 3 20.871 18.814 14.756 1 28.75 ? C2' HO4 403 A 1 
HETATM 21 O O2' HO4 . . . E 3 20.61 17.511 14.22 1 32.07 ? O2' HO4 403 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           21 
#