data_4O1L # _model_server_result.job_id WW5gB52L3ND5w20q4OXvug _model_server_result.datetime_utc '2024-11-05 10:52:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4o1l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":404}' # _entry.id 4O1L # _exptl.entry_id 4O1L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 290.275 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-ethynyl-7-(beta-D-ribofuranosyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4O1L _cell.length_a 67.31 _cell.length_b 156.59 _cell.length_c 58.21 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4O1L _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K 1 1 A,C,D,E,F,J 2 1 B,G,H,I,K 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 67 A THR 66 1_555 C MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc2 D MG MG . A MG 402 1_555 J O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc3 D MG MG . A MG 402 1_555 J O HOH . A HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc4 D MG MG . A MG 402 1_555 J O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc5 D MG MG . A MG 402 1_555 J O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc6 D MG MG . A MG 402 1_555 J O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc7 B OG1 THR 67 B THR 66 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.989 ? metalc ? metalc8 H MG MG . B MG 402 1_555 K O HOH . B HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc9 H MG MG . B MG 402 1_555 K O HOH . B HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? metalc ? metalc10 H MG MG . B MG 402 1_555 K O HOH . B HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc11 H MG MG . B MG 402 1_555 K O HOH . B HOH 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? # _chem_comp.formula 'C13 H14 N4 O4' _chem_comp.formula_weight 290.275 _chem_comp.id HO4 _chem_comp.mon_nstd_flag . _chem_comp.name 5-ethynyl-7-(beta-D-ribofuranosyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C10 HO4 trip 150 n n O2' C2' HO4 sing 151 n n C10 C7 HO4 sing 152 n n C2' C3' HO4 sing 153 n n C2' C1' HO4 sing 154 n n C7 C8 HO4 doub 155 n y C7 C5 HO4 sing 156 n y C8 N9 HO4 sing 157 n y C3' O3' HO4 sing 158 n n C3' C4' HO4 sing 159 n n N6 C6 HO4 sing 160 n n C5 C6 HO4 sing 161 n y C5 C4 HO4 doub 162 n y N9 C1' HO4 sing 163 n n N9 C4 HO4 sing 164 n y C1' O4' HO4 sing 165 n n C6 N1 HO4 doub 166 n y C4 N3 HO4 sing 167 n y C4' C5' HO4 sing 168 n n C4' O4' HO4 sing 169 n n C5' O5' HO4 sing 170 n n N1 C2 HO4 sing 171 n y N3 C2 HO4 doub 172 n y C11 H1 HO4 sing 173 n n C8 H2 HO4 sing 174 n n N6 H3 HO4 sing 175 n n N6 H4 HO4 sing 176 n n C2 H5 HO4 sing 177 n n C1' H6 HO4 sing 178 n n C4' H7 HO4 sing 179 n n C5' H8 HO4 sing 180 n n C5' H9 HO4 sing 181 n n O5' H10 HO4 sing 182 n n C3' H11 HO4 sing 183 n n O3' H12 HO4 sing 184 n n C2' H13 HO4 sing 185 n n O2' H14 HO4 sing 186 n n # _atom_sites.entry_id 4O1L _atom_sites.fract_transf_matrix[1][1] 0.014857 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006386 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 401 3 MG MG . D 2 MG A 1 402 4 MG MG . E 3 HO4 A 1 403 1 HO4 H04 . F 3 HO4 A 1 404 2 HO4 H04 . G 2 MG B 1 401 1 MG MG . H 2 MG B 1 402 2 MG MG . I 3 HO4 B 1 403 3 HO4 H04 . J 4 HOH A 1 501 10 HOH HOH . J 4 HOH A 2 502 12 HOH HOH . J 4 HOH A 3 503 13 HOH HOH . J 4 HOH A 4 504 14 HOH HOH . J 4 HOH A 5 505 15 HOH HOH . J 4 HOH A 6 506 17 HOH HOH . J 4 HOH A 7 507 18 HOH HOH . J 4 HOH A 8 508 19 HOH HOH . J 4 HOH A 9 509 20 HOH HOH . J 4 HOH A 10 510 21 HOH HOH . J 4 HOH A 11 511 22 HOH HOH . J 4 HOH A 12 512 23 HOH HOH . J 4 HOH A 13 513 27 HOH HOH . J 4 HOH A 14 514 28 HOH HOH . J 4 HOH A 15 515 29 HOH HOH . J 4 HOH A 16 516 35 HOH HOH . J 4 HOH A 17 517 36 HOH HOH . J 4 HOH A 18 518 37 HOH HOH . J 4 HOH A 19 519 39 HOH HOH . K 4 HOH B 1 501 1 HOH HOH . K 4 HOH B 2 502 2 HOH HOH . K 4 HOH B 3 503 3 HOH HOH . K 4 HOH B 4 504 4 HOH HOH . K 4 HOH B 5 505 5 HOH HOH . K 4 HOH B 6 506 6 HOH HOH . K 4 HOH B 7 507 7 HOH HOH . K 4 HOH B 8 508 8 HOH HOH . K 4 HOH B 9 509 9 HOH HOH . K 4 HOH B 10 510 11 HOH HOH . K 4 HOH B 11 511 16 HOH HOH . K 4 HOH B 12 512 24 HOH HOH . K 4 HOH B 13 513 25 HOH HOH . K 4 HOH B 14 514 26 HOH HOH . K 4 HOH B 15 515 30 HOH HOH . K 4 HOH B 16 516 31 HOH HOH . K 4 HOH B 17 517 32 HOH HOH . K 4 HOH B 18 518 33 HOH HOH . K 4 HOH B 19 519 34 HOH HOH . K 4 HOH B 20 520 38 HOH HOH . K 4 HOH B 21 521 40 HOH HOH . K 4 HOH B 22 522 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 HO4 . . . F 3 32.055 29.696 20.704 1 53.77 ? C11 HO4 404 A 1 HETATM 2 C C10 HO4 . . . F 3 32.286 28.965 21.371 1 57.2 ? C10 HO4 404 A 1 HETATM 3 C C7 HO4 . . . F 3 32.633 28.172 22.449 1 54.54 ? C7 HO4 404 A 1 HETATM 4 C C8 HO4 . . . F 3 31.758 27.368 23.03 1 50.29 ? C8 HO4 404 A 1 HETATM 5 C C5 HO4 . . . F 3 33.871 27.997 22.95 1 50.12 ? C5 HO4 404 A 1 HETATM 6 C C6 HO4 . . . F 3 35.093 28.514 22.712 1 50.94 ? C6 HO4 404 A 1 HETATM 7 N N6 HO4 . . . F 3 35.257 29.462 21.783 1 48.72 ? N6 HO4 404 A 1 HETATM 8 N N1 HO4 . . . F 3 36.163 28.077 23.401 1 55.71 ? N1 HO4 404 A 1 HETATM 9 C C2 HO4 . . . F 3 36.024 27.066 24.367 1 53.1 ? C2 HO4 404 A 1 HETATM 10 N N3 HO4 . . . F 3 34.764 26.553 24.602 1 49.73 ? N3 HO4 404 A 1 HETATM 11 C C4 HO4 . . . F 3 33.738 27.04 23.882 1 48.58 ? C4 HO4 404 A 1 HETATM 12 N N9 HO4 . . . F 3 32.476 26.671 23.907 1 48.23 ? N9 HO4 404 A 1 HETATM 13 C C1' HO4 . . . F 3 32.092 25.682 24.831 1 45.64 ? C1' HO4 404 A 1 HETATM 14 O O4' HO4 . . . F 3 30.936 25.153 24.231 1 46.35 ? O4' HO4 404 A 1 HETATM 15 C C4' HO4 . . . F 3 29.787 25.454 25.108 1 46.9 ? C4' HO4 404 A 1 HETATM 16 C C5' HO4 . . . F 3 28.541 25.533 24.248 1 44.68 ? C5' HO4 404 A 1 HETATM 17 O O5' HO4 . . . F 3 28.338 26.888 23.831 1 44.68 ? O5' HO4 404 A 1 HETATM 18 C C3' HO4 . . . F 3 30.232 26.735 25.807 1 47.3 ? C3' HO4 404 A 1 HETATM 19 O O3' HO4 . . . F 3 29.489 27.004 26.967 1 46.13 ? O3' HO4 404 A 1 HETATM 20 C C2' HO4 . . . F 3 31.692 26.357 26.114 1 45.95 ? C2' HO4 404 A 1 HETATM 21 O O2' HO4 . . . F 3 31.823 25.412 27.144 1 47.85 ? O2' HO4 404 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 364 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #