data_4O1O
#
_model_server_result.job_id            gKyga3PH2v7u7FbtVhwU0A 
_model_server_result.datetime_utc      '2024-10-12 12:25:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4o1o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1000}' 
#
_entry.id    4O1O 
#
_exptl.entry_id    4O1O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              1165.593 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphono hydrogen phosphate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.03 
_cell.angle_gamma         90 
_cell.entry_id            4O1O 
_cell.length_a            59.792 
_cell.length_b            111.968 
_cell.length_c            268.465 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4O1O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F 1 1 
C,D,G,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C30 H40 N15 O25 P5' 
_chem_comp.formula_weight    1165.593 
_chem_comp.id                25L 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphono hydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-5'-oligoadenylate trimer" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 25L doub 1 n y 
N1 C6 25L sing 2 n y 
C2 N3 25L sing 3 n y 
N3 C4 25L doub 4 n y 
C4 C5 25L sing 5 n y 
C4 N9 25L sing 6 n y 
C5 C6 25L doub 7 n y 
C5 N7 25L sing 8 n y 
C6 N6 25L sing 9 n n 
N7 C8 25L doub 10 n y 
C8 N9 25L sing 11 n y 
N9 C1' 25L sing 12 n n 
C1' C2' 25L sing 13 n n 
C1' O4' 25L sing 14 n n 
C2' O2' 25L sing 15 n n 
C2' C3' 25L sing 16 n n 
C3' O3' 25L sing 17 n n 
C3' C4' 25L sing 18 n n 
C4' O4' 25L sing 19 n n 
C4' C5' 25L sing 20 n n 
C5' O5' 25L sing 21 n n 
O5' PCU 25L sing 22 n n 
NAB CBV 25L sing 23 n n 
NAC CBW 25L sing 24 n n 
OAD PCS 25L doub 25 n n 
OAE PCT 25L doub 26 n n 
OAF PCU 25L doub 27 n n 
OAG PCV 25L doub 28 n n 
OAH PCW 25L doub 29 n n 
OAK CCF 25L sing 30 n n 
OAL CCG 25L sing 31 n n 
OAM PCT 25L sing 32 n n 
OAN PCS 25L sing 33 n n 
OAO PCS 25L sing 34 n n 
OAP PCU 25L sing 35 n n 
OAQ PCV 25L sing 36 n n 
OAR PCW 25L sing 37 n n 
CAT NBC 25L doub 38 n y 
CAT NBF 25L sing 39 n y 
CAU NBD 25L doub 40 n y 
CAU NBG 25L sing 41 n y 
CAW NBI 25L doub 42 n y 
CAW NCQ 25L sing 43 n y 
CAX NBJ 25L doub 44 n y 
CAX NCR 25L sing 45 n y 
CAY OBK 25L sing 46 n n 
CAY CCI 25L sing 47 n n 
CBA OBM 25L sing 48 n n 
CBA CCJ 25L sing 49 n n 
NBC CBV 25L sing 50 n y 
NBD CBW 25L sing 51 n y 
NBF CCB 25L doub 52 n y 
NBG CCC 25L doub 53 n y 
NBI CBY 25L sing 54 n y 
NBJ CBZ 25L sing 55 n y 
OBK PCT 25L sing 56 n n 
OBM PCV 25L sing 57 n n 
OBO CCI 25L sing 58 n n 
OBO CCN 25L sing 59 n n 
OBP CCJ 25L sing 60 n n 
OBP CCO 25L sing 61 n n 
OBQ CCK 25L sing 62 n n 
OBQ PCV 25L sing 63 n n 
OBR CCL 25L sing 64 n n 
OBR PCU 25L sing 65 n n 
OBS PCS 25L sing 66 n n 
OBS PCW 25L sing 67 n n 
OBT PCT 25L sing 68 n n 
OBT PCW 25L sing 69 n n 
CBV CBY 25L doub 70 n y 
CBW CBZ 25L doub 71 n y 
CBY CCB 25L sing 72 n y 
CBZ CCC 25L sing 73 n y 
CCB NCQ 25L sing 74 n y 
CCC NCR 25L sing 75 n y 
CCF CCI 25L sing 76 n n 
CCF CCK 25L sing 77 n n 
CCG CCJ 25L sing 78 n n 
CCG CCL 25L sing 79 n n 
CCK CCN 25L sing 80 n n 
CCL CCO 25L sing 81 n n 
CCN NCQ 25L sing 82 n n 
CCO NCR 25L sing 83 n n 
C2 H2 25L sing 84 n n 
N6 HN6 25L sing 85 n n 
N6 HN6A 25L sing 86 n n 
C8 H8 25L sing 87 n n 
C1' H1' 25L sing 88 n n 
C2' H2' 25L sing 89 n n 
O2' HO2' 25L sing 90 n n 
C3' H3' 25L sing 91 n n 
O3' HO3' 25L sing 92 n n 
C4' H4' 25L sing 93 n n 
C5' H5' 25L sing 94 n n 
C5' "H5'A" 25L sing 95 n n 
NAB HNAB 25L sing 96 n n 
NAB HNAA 25L sing 97 n n 
NAC HNAC 25L sing 98 n n 
NAC HNAD 25L sing 99 n n 
OAK HOAK 25L sing 100 n n 
OAL HOAL 25L sing 101 n n 
OAM HOAM 25L sing 102 n n 
OAN HOAN 25L sing 103 n n 
OAO HOAO 25L sing 104 n n 
OAP HOAP 25L sing 105 n n 
OAQ HOAQ 25L sing 106 n n 
OAR HOAR 25L sing 107 n n 
CAT HAT 25L sing 108 n n 
CAU HAU 25L sing 109 n n 
CAW HAW 25L sing 110 n n 
CAX HAX 25L sing 111 n n 
CAY HAY 25L sing 112 n n 
CAY HAYA 25L sing 113 n n 
CBA HBA 25L sing 114 n n 
CBA HBAA 25L sing 115 n n 
CCF HCF 25L sing 116 n n 
CCG HCG 25L sing 117 n n 
CCI HCI 25L sing 118 n n 
CCJ HCJ 25L sing 119 n n 
CCK HCK 25L sing 120 n n 
CCL HCL 25L sing 121 n n 
CCN HCN 25L sing 122 n n 
CCO HCO 25L sing 123 n n 
#
_atom_sites.entry_id                     4O1O 
_atom_sites.fract_transf_matrix[1][1]    0.016725 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000009 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008931 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003725 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 25L A 1 1000 1000 25L 25A . 
F 2 25L B 1 1000 1000 25L 25A . 
G 2 25L C 1 1000 1000 25L 25A . 
H 2 25L D 1 1000 1000 25L 25A . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 25L . . . F 2 0.5 2.21 96.695 1 67.07 ? N1 25L 1000 B 1 
HETATM 2 C C2 25L . . . F 2 0.815 1.614 97.998 1 76.11 ? C2 25L 1000 B 1 
HETATM 3 N N3 25L . . . F 2 1.715 0.44 97.943 1 69.96 ? N3 25L 1000 B 1 
HETATM 4 C C4 25L . . . F 2 2.22 -0.06 96.81 1 65.32 ? C4 25L 1000 B 1 
HETATM 5 C C5 25L . . . F 2 1.865 0.584 95.561 1 67.7 ? C5 25L 1000 B 1 
HETATM 6 C C6 25L . . . F 2 0.978 1.727 95.552 1 64.76 ? C6 25L 1000 B 1 
HETATM 7 N N6 25L . . . F 2 0.691 2.28 94.364 1 66.76 ? N6 25L 1000 B 1 
HETATM 8 N N7 25L . . . F 2 2.488 -0.074 94.585 1 81.96 ? N7 25L 1000 B 1 
HETATM 9 C C8 25L . . . F 2 3.199 -1.083 95.164 1 77.52 ? C8 25L 1000 B 1 
HETATM 10 N N9 25L . . . F 2 3.034 -1.08 96.5 1 76.27 ? N9 25L 1000 B 1 
HETATM 11 C C1' 25L . . . F 2 3.705 -2.044 97.45 1 86.37 ? C1' 25L 1000 B 1 
HETATM 12 C C2' 25L . . . F 2 3.602 -3.518 97.01 1 86.6 ? C2' 25L 1000 B 1 
HETATM 13 O O2' 25L . . . F 2 3.267 -4.431 98.082 1 73.23 ? O2' 25L 1000 B 1 
HETATM 14 C C3' 25L . . . F 2 4.998 -3.798 96.449 1 79.79 ? C3' 25L 1000 B 1 
HETATM 15 O O3' 25L . . . F 2 5.337 -5.173 96.529 1 67.18 ? O3' 25L 1000 B 1 
HETATM 16 C C4' 25L . . . F 2 5.904 -2.89 97.286 1 73.04 ? C4' 25L 1000 B 1 
HETATM 17 O O4' 25L . . . F 2 5.127 -1.724 97.491 1 79.57 ? O4' 25L 1000 B 1 
HETATM 18 C C5' 25L . . . F 2 7.152 -2.463 96.577 1 65.25 ? C5' 25L 1000 B 1 
HETATM 19 O O5' 25L . . . F 2 6.731 -2.031 95.321 1 59.29 ? O5' 25L 1000 B 1 
HETATM 20 N NAB 25L . . . F 2 12.509 -5.033 86.556 1 76.72 ? NAB 25L 1000 B 1 
HETATM 21 N NAC 25L . . . F 2 10.307 -6.92 88.618 1 130.07 ? NAC 25L 1000 B 1 
HETATM 22 O OAD 25L . . . F 2 18.48 -10.133 92.032 1 84.8 ? OAD 25L 1000 B 1 
HETATM 23 O OAE 25L . . . F 2 17.702 -7.459 87.447 1 77.65 ? OAE 25L 1000 B 1 
HETATM 24 O OAF 25L . . . F 2 7.749 -1.967 92.942 1 94.14 ? OAF 25L 1000 B 1 
HETATM 25 O OAG 25L . . . F 2 14.726 -5.859 96.706 1 52.57 ? OAG 25L 1000 B 1 
HETATM 26 O OAH 25L . . . F 2 18.971 -9.945 87.626 1 100.65 ? OAH 25L 1000 B 1 
HETATM 27 O OAK 25L . . . F 2 17.271 -8.209 92.939 1 72.03 ? OAK 25L 1000 B 1 
HETATM 28 O OAL 25L . . . F 2 10.815 -2.632 96.655 1 95.24 ? OAL 25L 1000 B 1 
HETATM 29 O OAM 25L . . . F 2 19.599 -5.628 87.917 1 62.65 ? OAM 25L 1000 B 1 
HETATM 30 O OAN 25L . . . F 2 16.043 -10.017 91.535 1 87.37 ? OAN 25L 1000 B 1 
HETATM 31 O OAO 25L . . . F 2 17.416 -11.588 90.086 1 83.02 ? OAO 25L 1000 B 1 
HETATM 32 O OAP 25L . . . F 2 7.868 0.037 94.462 1 88.46 ? OAP 25L 1000 B 1 
HETATM 33 O OAQ 25L . . . F 2 14.211 -7.812 95.071 1 63.5 ? OAQ 25L 1000 B 1 
HETATM 34 O OAR 25L . . . F 2 20.415 -10.094 89.792 1 92.57 ? OAR 25L 1000 B 1 
HETATM 35 C CAT 25L . . . F 2 12.849 -2.446 89.249 1 93.02 ? CAT 25L 1000 B 1 
HETATM 36 C CAU 25L . . . F 2 9.625 -3.303 88.764 1 110.76 ? CAU 25L 1000 B 1 
HETATM 37 C CAW 25L . . . F 2 14.668 -6.582 89.81 1 77.82 ? CAW 25L 1000 B 1 
HETATM 38 C CAX 25L . . . F 2 11.029 -5.318 92.608 1 122.58 ? CAX 25L 1000 B 1 
HETATM 39 C CAY 25L . . . F 2 18.444 -6.554 90.903 1 52.23 ? CAY 25L 1000 B 1 
HETATM 40 C CBA 25L . . . F 2 13.543 -3.962 94.968 1 89.69 ? CBA 25L 1000 B 1 
HETATM 41 N NBC 25L . . . F 2 12.498 -3.12 87.992 1 85.32 ? NBC 25L 1000 B 1 
HETATM 42 N NBD 25L . . . F 2 9.782 -4.683 88.303 1 96.2 ? NBD 25L 1000 B 1 
HETATM 43 N NBF 25L . . . F 2 13.597 -3.267 90.217 1 88.9 ? NBF 25L 1000 B 1 
HETATM 44 N NBG 25L . . . F 2 9.961 -3.06 90.164 1 96.18 ? NBG 25L 1000 B 1 
HETATM 45 N NBI 25L . . . F 2 14.014 -6.396 88.658 1 74.43 ? NBI 25L 1000 B 1 
HETATM 46 N NBJ 25L . . . F 2 10.907 -6.136 91.533 1 126.84 ? NBJ 25L 1000 B 1 
HETATM 47 O OBK 25L . . . F 2 17.882 -6.214 89.672 1 60.59 ? OBK 25L 1000 B 1 
HETATM 48 O OBM 25L . . . F 2 13.423 -5.352 94.583 1 79.62 ? OBM 25L 1000 B 1 
HETATM 49 O OBO 25L . . . F 2 16.643 -4.965 91.689 1 70.56 ? OBO 25L 1000 B 1 
HETATM 50 O OBP 25L . . . F 2 12.099 -2.577 93.465 1 87.64 ? OBP 25L 1000 B 1 
HETATM 51 O OBQ 25L . . . F 2 15.665 -6.024 94.128 1 49.59 ? OBQ 25L 1000 B 1 
HETATM 52 O OBR 25L . . . F 2 9.196 -2.087 94.987 1 99.37 ? OBR 25L 1000 B 1 
HETATM 53 O OBS 25L . . . F 2 17.87 -9.274 89.844 1 91.61 ? OBS 25L 1000 B 1 
HETATM 54 O OBT 25L . . . F 2 19.703 -7.885 88.863 1 87.66 ? OBT 25L 1000 B 1 
HETATM 55 C CBV 25L . . . F 2 12.836 -4.389 87.699 1 78.61 ? CBV 25L 1000 B 1 
HETATM 56 C CBW 25L . . . F 2 10.184 -5.669 89.098 1 103.95 ? CBW 25L 1000 B 1 
HETATM 57 C CBY 25L . . . F 2 13.564 -5.157 88.683 1 75.05 ? CBY 25L 1000 B 1 
HETATM 58 C CBZ 25L . . . F 2 10.495 -5.391 90.497 1 106.65 ? CBZ 25L 1000 B 1 
HETATM 59 C CCB 25L . . . F 2 13.949 -4.542 89.947 1 77.88 ? CCB 25L 1000 B 1 
HETATM 60 C CCC 25L . . . F 2 10.365 -4.027 90.985 1 102.26 ? CCC 25L 1000 B 1 
HETATM 61 C CCF 25L . . . F 2 16.55 -7.233 92.208 1 62.98 ? CCF 25L 1000 B 1 
HETATM 62 C CCG 25L . . . F 2 11.054 -3.452 95.492 1 98.53 ? CCG 25L 1000 B 1 
HETATM 63 C CCI 25L . . . F 2 17.489 -6.103 91.967 1 63.52 ? CCI 25L 1000 B 1 
HETATM 64 C CCJ 25L . . . F 2 12.357 -2.982 94.83 1 94.55 ? CCJ 25L 1000 B 1 
HETATM 65 C CCK 25L . . . F 2 15.364 -6.511 92.846 1 60.13 ? CCK 25L 1000 B 1 
HETATM 66 C CCL 25L . . . F 2 9.96 -3.195 94.48 1 102.08 ? CCL 25L 1000 B 1 
HETATM 67 C CCN 25L . . . F 2 15.253 -5.286 91.965 1 71.83 ? CCN 25L 1000 B 1 
HETATM 68 C CCO 25L . . . F 2 10.717 -2.875 93.177 1 106.11 ? CCO 25L 1000 B 1 
HETATM 69 N NCQ 25L . . . F 2 14.619 -5.481 90.609 1 78.47 ? NCQ 25L 1000 B 1 
HETATM 70 N NCR 25L . . . F 2 10.697 -4.054 92.271 1 114.61 ? NCR 25L 1000 B 1 
HETATM 71 P PCS 25L . . . F 2 17.414 -10.342 90.967 1 97.91 ? PCS 25L 1000 B 1 
HETATM 72 P PCT 25L . . . F 2 18.685 -6.731 88.363 1 82.61 ? PCT 25L 1000 B 1 
HETATM 73 P PCU 25L . . . F 2 7.857 -1.458 94.349 1 79.06 ? PCU 25L 1000 B 1 
HETATM 74 P PCV 25L . . . F 2 14.544 -6.344 95.233 1 70.83 ? PCV 25L 1000 B 1 
HETATM 75 P PCW 25L . . . F 2 19.273 -9.443 89.017 1 92.23 ? PCW 25L 1000 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           75 
#