data_4O1O
#
_model_server_result.job_id            1VDzcg3b9MwzKNQ19eVQxA 
_model_server_result.datetime_utc      '2024-10-12 12:27:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4o1o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1000}' 
#
_entry.id    4O1O 
#
_exptl.entry_id    4O1O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              1165.593 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphono hydrogen phosphate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.03 
_cell.angle_gamma         90 
_cell.entry_id            4O1O 
_cell.length_a            59.792 
_cell.length_b            111.968 
_cell.length_c            268.465 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4O1O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F 1 1 
C,D,G,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C30 H40 N15 O25 P5' 
_chem_comp.formula_weight    1165.593 
_chem_comp.id                25L 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphono hydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-5'-oligoadenylate trimer" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 25L doub 1 n y 
N1 C6 25L sing 2 n y 
C2 N3 25L sing 3 n y 
N3 C4 25L doub 4 n y 
C4 C5 25L sing 5 n y 
C4 N9 25L sing 6 n y 
C5 C6 25L doub 7 n y 
C5 N7 25L sing 8 n y 
C6 N6 25L sing 9 n n 
N7 C8 25L doub 10 n y 
C8 N9 25L sing 11 n y 
N9 C1' 25L sing 12 n n 
C1' C2' 25L sing 13 n n 
C1' O4' 25L sing 14 n n 
C2' O2' 25L sing 15 n n 
C2' C3' 25L sing 16 n n 
C3' O3' 25L sing 17 n n 
C3' C4' 25L sing 18 n n 
C4' O4' 25L sing 19 n n 
C4' C5' 25L sing 20 n n 
C5' O5' 25L sing 21 n n 
O5' PCU 25L sing 22 n n 
NAB CBV 25L sing 23 n n 
NAC CBW 25L sing 24 n n 
OAD PCS 25L doub 25 n n 
OAE PCT 25L doub 26 n n 
OAF PCU 25L doub 27 n n 
OAG PCV 25L doub 28 n n 
OAH PCW 25L doub 29 n n 
OAK CCF 25L sing 30 n n 
OAL CCG 25L sing 31 n n 
OAM PCT 25L sing 32 n n 
OAN PCS 25L sing 33 n n 
OAO PCS 25L sing 34 n n 
OAP PCU 25L sing 35 n n 
OAQ PCV 25L sing 36 n n 
OAR PCW 25L sing 37 n n 
CAT NBC 25L doub 38 n y 
CAT NBF 25L sing 39 n y 
CAU NBD 25L doub 40 n y 
CAU NBG 25L sing 41 n y 
CAW NBI 25L doub 42 n y 
CAW NCQ 25L sing 43 n y 
CAX NBJ 25L doub 44 n y 
CAX NCR 25L sing 45 n y 
CAY OBK 25L sing 46 n n 
CAY CCI 25L sing 47 n n 
CBA OBM 25L sing 48 n n 
CBA CCJ 25L sing 49 n n 
NBC CBV 25L sing 50 n y 
NBD CBW 25L sing 51 n y 
NBF CCB 25L doub 52 n y 
NBG CCC 25L doub 53 n y 
NBI CBY 25L sing 54 n y 
NBJ CBZ 25L sing 55 n y 
OBK PCT 25L sing 56 n n 
OBM PCV 25L sing 57 n n 
OBO CCI 25L sing 58 n n 
OBO CCN 25L sing 59 n n 
OBP CCJ 25L sing 60 n n 
OBP CCO 25L sing 61 n n 
OBQ CCK 25L sing 62 n n 
OBQ PCV 25L sing 63 n n 
OBR CCL 25L sing 64 n n 
OBR PCU 25L sing 65 n n 
OBS PCS 25L sing 66 n n 
OBS PCW 25L sing 67 n n 
OBT PCT 25L sing 68 n n 
OBT PCW 25L sing 69 n n 
CBV CBY 25L doub 70 n y 
CBW CBZ 25L doub 71 n y 
CBY CCB 25L sing 72 n y 
CBZ CCC 25L sing 73 n y 
CCB NCQ 25L sing 74 n y 
CCC NCR 25L sing 75 n y 
CCF CCI 25L sing 76 n n 
CCF CCK 25L sing 77 n n 
CCG CCJ 25L sing 78 n n 
CCG CCL 25L sing 79 n n 
CCK CCN 25L sing 80 n n 
CCL CCO 25L sing 81 n n 
CCN NCQ 25L sing 82 n n 
CCO NCR 25L sing 83 n n 
C2 H2 25L sing 84 n n 
N6 HN6 25L sing 85 n n 
N6 HN6A 25L sing 86 n n 
C8 H8 25L sing 87 n n 
C1' H1' 25L sing 88 n n 
C2' H2' 25L sing 89 n n 
O2' HO2' 25L sing 90 n n 
C3' H3' 25L sing 91 n n 
O3' HO3' 25L sing 92 n n 
C4' H4' 25L sing 93 n n 
C5' H5' 25L sing 94 n n 
C5' "H5'A" 25L sing 95 n n 
NAB HNAB 25L sing 96 n n 
NAB HNAA 25L sing 97 n n 
NAC HNAC 25L sing 98 n n 
NAC HNAD 25L sing 99 n n 
OAK HOAK 25L sing 100 n n 
OAL HOAL 25L sing 101 n n 
OAM HOAM 25L sing 102 n n 
OAN HOAN 25L sing 103 n n 
OAO HOAO 25L sing 104 n n 
OAP HOAP 25L sing 105 n n 
OAQ HOAQ 25L sing 106 n n 
OAR HOAR 25L sing 107 n n 
CAT HAT 25L sing 108 n n 
CAU HAU 25L sing 109 n n 
CAW HAW 25L sing 110 n n 
CAX HAX 25L sing 111 n n 
CAY HAY 25L sing 112 n n 
CAY HAYA 25L sing 113 n n 
CBA HBA 25L sing 114 n n 
CBA HBAA 25L sing 115 n n 
CCF HCF 25L sing 116 n n 
CCG HCG 25L sing 117 n n 
CCI HCI 25L sing 118 n n 
CCJ HCJ 25L sing 119 n n 
CCK HCK 25L sing 120 n n 
CCL HCL 25L sing 121 n n 
CCN HCN 25L sing 122 n n 
CCO HCO 25L sing 123 n n 
#
_atom_sites.entry_id                     4O1O 
_atom_sites.fract_transf_matrix[1][1]    0.016725 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000009 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008931 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003725 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 25L A 1 1000 1000 25L 25A . 
F 2 25L B 1 1000 1000 25L 25A . 
G 2 25L C 1 1000 1000 25L 25A . 
H 2 25L D 1 1000 1000 25L 25A . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 25L . . . G 2 1.602 -0.23 48.167 1 208.6 ? N1 25L 1000 C 1 
HETATM 2 C C2 25L . . . G 2 2.216 -0.638 46.894 1 203.84 ? C2 25L 1000 C 1 
HETATM 3 N N3 25L . . . G 2 1.572 -1.787 46.24 1 213.78 ? N3 25L 1000 C 1 
HETATM 4 C C4 25L . . . G 2 0.488 -2.436 46.752 1 236.51 ? C4 25L 1000 C 1 
HETATM 5 C C5 25L . . . G 2 -0.098 -1.99 48.035 1 230.02 ? C5 25L 1000 C 1 
HETATM 6 C C6 25L . . . G 2 0.524 -0.829 48.728 1 216.09 ? C6 25L 1000 C 1 
HETATM 7 N N6 25L . . . G 2 0.033 -0.371 49.908 1 218.64 ? N6 25L 1000 C 1 
HETATM 8 N N7 25L . . . G 2 -1.141 -2.813 48.278 1 240.49 ? N7 25L 1000 C 1 
HETATM 9 C C8 25L . . . G 2 -1.225 -3.705 47.248 1 247.79 ? C8 25L 1000 C 1 
HETATM 10 N N9 25L . . . G 2 -0.247 -3.487 46.335 1 247.28 ? N9 25L 1000 C 1 
HETATM 11 C C1' 25L . . . G 2 -0.015 -4.242 45.054 1 223.27 ? C1' 25L 1000 C 1 
HETATM 12 C C2' 25L . . . G 2 0.264 -5.732 45.216 1 207.14 ? C2' 25L 1000 C 1 
HETATM 13 O O2' 25L . . . G 2 1.423 -6.079 44.443 1 192.74 ? O2' 25L 1000 C 1 
HETATM 14 C C3' 25L . . . G 2 -0.972 -6.438 44.689 1 194.33 ? C3' 25L 1000 C 1 
HETATM 15 O O3' 25L . . . G 2 -0.65 -7.653 44.005 1 185.97 ? O3' 25L 1000 C 1 
HETATM 16 C C4' 25L . . . G 2 -1.594 -5.428 43.741 1 187.33 ? C4' 25L 1000 C 1 
HETATM 17 O O4' 25L . . . G 2 -1.176 -4.146 44.21 1 207.04 ? O4' 25L 1000 C 1 
HETATM 18 C C5' 25L . . . G 2 -3.113 -5.476 43.657 1 181.47 ? C5' 25L 1000 C 1 
HETATM 19 O O5' 25L . . . G 2 -3.676 -5.214 44.937 1 173.36 ? O5' 25L 1000 C 1 
HETATM 20 N NAB 25L . . . G 2 -13.948 -6.756 47.128 1 93.99 ? NAB 25L 1000 C 1 
HETATM 21 N NAC 25L . . . G 2 -10.808 -9.25 47.159 1 93.07 ? NAC 25L 1000 C 1 
HETATM 22 O OAD 25L . . . G 2 -14.279 -13.08 38.597 1 184.31 ? OAD 25L 1000 C 1 
HETATM 23 O OAE 25L . . . G 2 -16.773 -9.883 42.288 1 139.62 ? OAE 25L 1000 C 1 
HETATM 24 O OAF 25L . . . G 2 -5.966 -5.36 45.979 1 191.23 ? OAF 25L 1000 C 1 
HETATM 25 O OAG 25L . . . G 2 -8.649 -7.785 38.402 1 153.28 ? OAG 25L 1000 C 1 
HETATM 26 O OAH 25L . . . G 2 -17.554 -12.476 41.515 1 219.8 ? OAH 25L 1000 C 1 
HETATM 27 O OAK 25L . . . G 2 -12.243 -10.684 39.001 1 112.79 ? OAK 25L 1000 C 1 
HETATM 28 O OAL 25L . . . G 2 -5.829 -4.332 40.944 1 115.87 ? OAL 25L 1000 C 1 
HETATM 29 O OAM 25L . . . G 2 -18.292 -8.527 40.608 1 103.18 ? OAM 25L 1000 C 1 
HETATM 30 O OAN 25L . . . G 2 -12.794 -12.974 40.606 1 192.11 ? OAN 25L 1000 C 1 
HETATM 31 O OAO 25L . . . G 2 -14.606 -14.721 40.615 1 137.48 ? OAO 25L 1000 C 1 
HETATM 32 O OAP 25L . . . G 2 -4.793 -3.059 45.557 1 177.94 ? OAP 25L 1000 C 1 
HETATM 33 O OAQ 25L . . . G 2 -8.416 -9.344 40.481 1 171.54 ? OAQ 25L 1000 C 1 
HETATM 34 O OAR 25L . . . G 2 -16.994 -12.963 39.017 1 199.75 ? OAR 25L 1000 C 1 
HETATM 35 C CAT 25L . . . G 2 -12.264 -4.711 44.469 1 119.17 ? CAT 25L 1000 C 1 
HETATM 36 C CAU 25L . . . G 2 -10.029 -5.67 48.055 1 103.13 ? CAU 25L 1000 C 1 
HETATM 37 C CAW 25L . . . G 2 -13.211 -9.126 43.427 1 116.92 ? CAW 25L 1000 C 1 
HETATM 38 C CAX 25L . . . G 2 -9.004 -7.197 43.846 1 99.61 ? CAX 25L 1000 C 1 
HETATM 39 C CAY 25L . . . G 2 -14.878 -9.009 39.452 1 117.6 ? CAY 25L 1000 C 1 
HETATM 40 C CBA 25L . . . G 2 -8.965 -5.551 40.189 1 128.93 ? CBA 25L 1000 C 1 
HETATM 41 N NBC 25L . . . G 2 -12.9 -5.209 45.705 1 116.68 ? NBC 25L 1000 C 1 
HETATM 42 N NBD 25L . . . G 2 -10.489 -7.078 48.153 1 103.15 ? NBD 25L 1000 C 1 
HETATM 43 N NBF 25L . . . G 2 -12.156 -5.727 43.429 1 117.52 ? NBF 25L 1000 C 1 
HETATM 44 N NBG 25L . . . G 2 -9.428 -5.249 46.757 1 111.18 ? NBG 25L 1000 C 1 
HETATM 45 N NBI 25L . . . G 2 -13.601 -8.772 44.693 1 105.97 ? NBI 25L 1000 C 1 
HETATM 46 N NBJ 25L . . . G 2 -9.571 -8.076 44.693 1 92.36 ? NBJ 25L 1000 C 1 
HETATM 47 O OBK 25L . . . G 2 -15.715 -8.524 40.502 1 119.82 ? OBK 25L 1000 C 1 
HETATM 48 O OBM 25L . . . G 2 -9.204 -6.871 40.692 1 136.83 ? OBM 25L 1000 C 1 
HETATM 49 O OBO 25L . . . G 2 -13.21 -7.652 40.621 1 96.31 ? OBO 25L 1000 C 1 
HETATM 50 O OBP 25L . . . G 2 -9.025 -4.572 42.486 1 137.2 ? OBP 25L 1000 C 1 
HETATM 51 O OBQ 25L . . . G 2 -10.668 -8.645 39.735 1 115.75 ? OBQ 25L 1000 C 1 
HETATM 52 O OBR 25L . . . G 2 -5.774 -4.316 43.656 1 163.77 ? OBR 25L 1000 C 1 
HETATM 53 O OBS 25L . . . G 2 -15.181 -12.271 40.7 1 186.87 ? OBS 25L 1000 C 1 
HETATM 54 O OBT 25L . . . G 2 -16.971 -10.6 39.861 1 155.46 ? OBT 25L 1000 C 1 
HETATM 55 C CBV 25L . . . G 2 -13.375 -6.454 45.934 1 100.73 ? CBV 25L 1000 C 1 
HETATM 56 C CBW 25L . . . G 2 -10.394 -7.947 47.103 1 101.69 ? CBW 25L 1000 C 1 
HETATM 57 C CBY 25L . . . G 2 -13.252 -7.465 44.86 1 111.37 ? CBY 25L 1000 C 1 
HETATM 58 C CBZ 25L . . . G 2 -9.806 -7.463 45.834 1 88.32 ? CBZ 25L 1000 C 1 
HETATM 59 C CCB 25L . . . G 2 -12.614 -7.009 43.601 1 120.22 ? CCB 25L 1000 C 1 
HETATM 60 C CCC 25L . . . G 2 -9.309 -6.081 45.679 1 101.31 ? CCC 25L 1000 C 1 
HETATM 61 C CCF 25L . . . G 2 -12.587 -9.859 40.129 1 108.63 ? CCF 25L 1000 C 1 
HETATM 62 C CCG 25L . . . G 2 -6.844 -5.151 41.597 1 142.67 ? CCG 25L 1000 C 1 
HETATM 63 C CCI 25L . . . G 2 -13.408 -8.67 39.65 1 107.98 ? CCI 25L 1000 C 1 
HETATM 64 C CCJ 25L . . . G 2 -8.268 -4.684 41.248 1 140.73 ? CCJ 25L 1000 C 1 
HETATM 65 C CCK 25L . . . G 2 -11.434 -9.148 40.802 1 91.88 ? CCK 25L 1000 C 1 
HETATM 66 C CCL 25L . . . G 2 -6.796 -5.183 43.142 1 139.77 ? CCL 25L 1000 C 1 
HETATM 67 C CCN 25L . . . G 2 -12.064 -7.952 41.426 1 91.42 ? CCN 25L 1000 C 1 
HETATM 68 C CCO 25L . . . G 2 -8.214 -4.846 43.658 1 123 ? CCO 25L 1000 C 1 
HETATM 69 N NCQ 25L . . . G 2 -12.609 -8.077 42.795 1 114.04 ? NCQ 25L 1000 C 1 
HETATM 70 N NCR 25L . . . G 2 -8.826 -5.995 44.414 1 108.31 ? NCR 25L 1000 C 1 
HETATM 71 P PCS 25L . . . G 2 -14.155 -13.363 40.082 1 184.06 ? PCS 25L 1000 C 1 
HETATM 72 P PCT 25L . . . G 2 -17.041 -9.35 40.892 1 132.53 ? PCT 25L 1000 C 1 
HETATM 73 P PCU 25L . . . G 2 -5.095 -4.468 45.121 1 189.33 ? PCU 25L 1000 C 1 
HETATM 74 P PCV 25L . . . G 2 -9.126 -8.203 39.783 1 155.47 ? PCV 25L 1000 C 1 
HETATM 75 P PCW 25L . . . G 2 -16.742 -12.157 40.274 1 203.32 ? PCW 25L 1000 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           75 
#