data_4O1O
#
_model_server_result.job_id            EGaHZwUI9Euk6ldENXg7BQ 
_model_server_result.datetime_utc      '2024-11-28 10:19:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4o1o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1000}' 
#
_entry.id    4O1O 
#
_exptl.entry_id    4O1O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              1165.593 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphono hydrogen phosphate' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.03 
_cell.angle_gamma         90 
_cell.entry_id            4O1O 
_cell.length_a            59.792 
_cell.length_b            111.968 
_cell.length_c            268.465 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4O1O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F 1 1 
C,D,G,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C30 H40 N15 O25 P5' 
_chem_comp.formula_weight    1165.593 
_chem_comp.id                25L 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphono hydrogen phosphate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-5'-oligoadenylate trimer" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 25L doub 1 n y 
N1 C6 25L sing 2 n y 
C2 N3 25L sing 3 n y 
N3 C4 25L doub 4 n y 
C4 C5 25L sing 5 n y 
C4 N9 25L sing 6 n y 
C5 C6 25L doub 7 n y 
C5 N7 25L sing 8 n y 
C6 N6 25L sing 9 n n 
N7 C8 25L doub 10 n y 
C8 N9 25L sing 11 n y 
N9 C1' 25L sing 12 n n 
C1' C2' 25L sing 13 n n 
C1' O4' 25L sing 14 n n 
C2' O2' 25L sing 15 n n 
C2' C3' 25L sing 16 n n 
C3' O3' 25L sing 17 n n 
C3' C4' 25L sing 18 n n 
C4' O4' 25L sing 19 n n 
C4' C5' 25L sing 20 n n 
C5' O5' 25L sing 21 n n 
O5' PCU 25L sing 22 n n 
NAB CBV 25L sing 23 n n 
NAC CBW 25L sing 24 n n 
OAD PCS 25L doub 25 n n 
OAE PCT 25L doub 26 n n 
OAF PCU 25L doub 27 n n 
OAG PCV 25L doub 28 n n 
OAH PCW 25L doub 29 n n 
OAK CCF 25L sing 30 n n 
OAL CCG 25L sing 31 n n 
OAM PCT 25L sing 32 n n 
OAN PCS 25L sing 33 n n 
OAO PCS 25L sing 34 n n 
OAP PCU 25L sing 35 n n 
OAQ PCV 25L sing 36 n n 
OAR PCW 25L sing 37 n n 
CAT NBC 25L doub 38 n y 
CAT NBF 25L sing 39 n y 
CAU NBD 25L doub 40 n y 
CAU NBG 25L sing 41 n y 
CAW NBI 25L doub 42 n y 
CAW NCQ 25L sing 43 n y 
CAX NBJ 25L doub 44 n y 
CAX NCR 25L sing 45 n y 
CAY OBK 25L sing 46 n n 
CAY CCI 25L sing 47 n n 
CBA OBM 25L sing 48 n n 
CBA CCJ 25L sing 49 n n 
NBC CBV 25L sing 50 n y 
NBD CBW 25L sing 51 n y 
NBF CCB 25L doub 52 n y 
NBG CCC 25L doub 53 n y 
NBI CBY 25L sing 54 n y 
NBJ CBZ 25L sing 55 n y 
OBK PCT 25L sing 56 n n 
OBM PCV 25L sing 57 n n 
OBO CCI 25L sing 58 n n 
OBO CCN 25L sing 59 n n 
OBP CCJ 25L sing 60 n n 
OBP CCO 25L sing 61 n n 
OBQ CCK 25L sing 62 n n 
OBQ PCV 25L sing 63 n n 
OBR CCL 25L sing 64 n n 
OBR PCU 25L sing 65 n n 
OBS PCS 25L sing 66 n n 
OBS PCW 25L sing 67 n n 
OBT PCT 25L sing 68 n n 
OBT PCW 25L sing 69 n n 
CBV CBY 25L doub 70 n y 
CBW CBZ 25L doub 71 n y 
CBY CCB 25L sing 72 n y 
CBZ CCC 25L sing 73 n y 
CCB NCQ 25L sing 74 n y 
CCC NCR 25L sing 75 n y 
CCF CCI 25L sing 76 n n 
CCF CCK 25L sing 77 n n 
CCG CCJ 25L sing 78 n n 
CCG CCL 25L sing 79 n n 
CCK CCN 25L sing 80 n n 
CCL CCO 25L sing 81 n n 
CCN NCQ 25L sing 82 n n 
CCO NCR 25L sing 83 n n 
C2 H2 25L sing 84 n n 
N6 HN6 25L sing 85 n n 
N6 HN6A 25L sing 86 n n 
C8 H8 25L sing 87 n n 
C1' H1' 25L sing 88 n n 
C2' H2' 25L sing 89 n n 
O2' HO2' 25L sing 90 n n 
C3' H3' 25L sing 91 n n 
O3' HO3' 25L sing 92 n n 
C4' H4' 25L sing 93 n n 
C5' H5' 25L sing 94 n n 
C5' "H5'A" 25L sing 95 n n 
NAB HNAB 25L sing 96 n n 
NAB HNAA 25L sing 97 n n 
NAC HNAC 25L sing 98 n n 
NAC HNAD 25L sing 99 n n 
OAK HOAK 25L sing 100 n n 
OAL HOAL 25L sing 101 n n 
OAM HOAM 25L sing 102 n n 
OAN HOAN 25L sing 103 n n 
OAO HOAO 25L sing 104 n n 
OAP HOAP 25L sing 105 n n 
OAQ HOAQ 25L sing 106 n n 
OAR HOAR 25L sing 107 n n 
CAT HAT 25L sing 108 n n 
CAU HAU 25L sing 109 n n 
CAW HAW 25L sing 110 n n 
CAX HAX 25L sing 111 n n 
CAY HAY 25L sing 112 n n 
CAY HAYA 25L sing 113 n n 
CBA HBA 25L sing 114 n n 
CBA HBAA 25L sing 115 n n 
CCF HCF 25L sing 116 n n 
CCG HCG 25L sing 117 n n 
CCI HCI 25L sing 118 n n 
CCJ HCJ 25L sing 119 n n 
CCK HCK 25L sing 120 n n 
CCL HCL 25L sing 121 n n 
CCN HCN 25L sing 122 n n 
CCO HCO 25L sing 123 n n 
#
_atom_sites.entry_id                     4O1O 
_atom_sites.fract_transf_matrix[1][1]    0.016725 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000009 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008931 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003725 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 25L A 1 1000 1000 25L 25A . 
F 2 25L B 1 1000 1000 25L 25A . 
G 2 25L C 1 1000 1000 25L 25A . 
H 2 25L D 1 1000 1000 25L 25A . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 25L . . . H 2 -24.677 -57.457 38.271 1 154.88 ? N1 25L 1000 D 1 
HETATM 2 C C2 25L . . . H 2 -24.236 -56.951 36.957 1 160.95 ? C2 25L 1000 D 1 
HETATM 3 N N3 25L . . . H 2 -23.517 -55.671 36.982 1 157.34 ? N3 25L 1000 D 1 
HETATM 4 C C4 25L . . . H 2 -23.269 -54.995 38.132 1 165.35 ? C4 25L 1000 D 1 
HETATM 5 C C5 25L . . . H 2 -23.718 -55.529 39.438 1 166.43 ? C5 25L 1000 D 1 
HETATM 6 C C6 25L . . . H 2 -24.456 -56.826 39.447 1 157.87 ? C6 25L 1000 D 1 
HETATM 7 N N6 25L . . . H 2 -24.903 -57.394 40.595 1 145.78 ? N6 25L 1000 D 1 
HETATM 8 N N7 25L . . . H 2 -23.311 -54.635 40.366 1 160.12 ? N7 25L 1000 D 1 
HETATM 9 C C8 25L . . . H 2 -22.667 -53.623 39.72 1 159.53 ? C8 25L 1000 D 1 
HETATM 10 N N9 25L . . . H 2 -22.644 -53.844 38.378 1 159.34 ? N9 25L 1000 D 1 
HETATM 11 C C1' 25L . . . H 2 -22.046 -53.014 37.285 1 142.98 ? C1' 25L 1000 D 1 
HETATM 12 C C2' 25L . . . H 2 -21.877 -51.556 37.687 1 140.17 ? C2' 25L 1000 D 1 
HETATM 13 O O2' 25L . . . H 2 -22.162 -50.702 36.564 1 127.74 ? O2' 25L 1000 D 1 
HETATM 14 C C3' 25L . . . H 2 -20.425 -51.515 38.131 1 132.79 ? C3' 25L 1000 D 1 
HETATM 15 O O3' 25L . . . H 2 -19.826 -50.222 38.099 1 140.25 ? O3' 25L 1000 D 1 
HETATM 16 C C4' 25L . . . H 2 -19.753 -52.471 37.159 1 138.12 ? C4' 25L 1000 D 1 
HETATM 17 O O4' 25L . . . H 2 -20.734 -53.493 36.915 1 136.8 ? O4' 25L 1000 D 1 
HETATM 18 C C5' 25L . . . H 2 -18.444 -53.001 37.741 1 142.24 ? C5' 25L 1000 D 1 
HETATM 19 O O5' 25L . . . H 2 -18.713 -53.78 38.914 1 148.95 ? O5' 25L 1000 D 1 
HETATM 20 N NAB 25L . . . H 2 -13.842 -50.169 47.538 1 137.7 ? NAB 25L 1000 D 1 
HETATM 21 N NAC 25L . . . H 2 -16.282 -48.546 46.103 1 93.18 ? NAC 25L 1000 D 1 
HETATM 22 O OAD 25L . . . H 2 -6.385 -46.077 41.938 1 170.6 ? OAD 25L 1000 D 1 
HETATM 23 O OAE 25L . . . H 2 -8.114 -46.63 47.135 1 109.65 ? OAE 25L 1000 D 1 
HETATM 24 O OAF 25L . . . H 2 -18.161 -53.846 41.382 1 95.54 ? OAF 25L 1000 D 1 
HETATM 25 O OAG 25L . . . H 2 -10.409 -50.048 37.951 1 95.9 ? OAG 25L 1000 D 1 
HETATM 26 O OAH 25L . . . H 2 -5.808 -44.34 45.818 1 108.77 ? OAH 25L 1000 D 1 
HETATM 27 O OAK 25L . . . H 2 -8.086 -47.726 40.974 1 157.45 ? OAK 25L 1000 D 1 
HETATM 28 O OAL 25L . . . H 2 -15.159 -52.407 37.764 1 92.39 ? OAL 25L 1000 D 1 
HETATM 29 O OAM 25L . . . H 2 -6.752 -48.897 47.109 1 121.51 ? OAM 25L 1000 D 1 
HETATM 30 O OAN 25L . . . H 2 -8.802 -45.414 42.275 1 199.43 ? OAN 25L 1000 D 1 
HETATM 31 O OAO 25L . . . H 2 -6.953 -43.701 42.674 1 212.26 ? OAO 25L 1000 D 1 
HETATM 32 O OAP 25L . . . H 2 -17.103 -55.613 39.704 1 120.81 ? OAP 25L 1000 D 1 
HETATM 33 O OAQ 25L . . . H 2 -11.828 -48.165 39.222 1 108.39 ? OAQ 25L 1000 D 1 
HETATM 34 O OAR 25L . . . H 2 -4.75 -45.803 43.906 1 122.74 ? OAR 25L 1000 D 1 
HETATM 35 C CAT 25L . . . H 2 -12.981 -52.789 44.974 1 145.21 ? CAT 25L 1000 D 1 
HETATM 36 C CAU 25L . . . H 2 -16.645 -52.211 45.794 1 115.81 ? CAU 25L 1000 D 1 
HETATM 37 C CAW 25L . . . H 2 -11.04 -48.693 44.501 1 163.3 ? CAW 25L 1000 D 1 
HETATM 38 C CAX 25L . . . H 2 -14.955 -49.95 42.122 1 118.71 ? CAX 25L 1000 D 1 
HETATM 39 C CAY 25L . . . H 2 -7.227 -49.01 44.107 1 154.33 ? CAY 25L 1000 D 1 
HETATM 40 C CBA 25L . . . H 2 -12.321 -51.753 38.986 1 95.65 ? CBA 25L 1000 D 1 
HETATM 41 N NBC 25L . . . H 2 -13.554 -52.059 46.132 1 143.29 ? NBC 25L 1000 D 1 
HETATM 42 N NBD 25L . . . H 2 -16.643 -50.82 46.285 1 105.15 ? NBD 25L 1000 D 1 
HETATM 43 N NBF 25L . . . H 2 -12.072 -52.023 44.114 1 131.83 ? NBF 25L 1000 D 1 
HETATM 44 N NBG 25L . . . H 2 -16.144 -52.383 44.411 1 121.41 ? NBG 25L 1000 D 1 
HETATM 45 N NBI 25L . . . H 2 -11.865 -48.808 45.568 1 163.11 ? NBI 25L 1000 D 1 
HETATM 46 N NBJ 25L . . . H 2 -15.272 -49.195 43.212 1 119.47 ? NBJ 25L 1000 D 1 
HETATM 47 O OBK 25L . . . H 2 -8.011 -48.332 45.108 1 141.85 ? OBK 25L 1000 D 1 
HETATM 48 O OBM 25L . . . H 2 -12.058 -50.6 39.787 1 110.29 ? OBM 25L 1000 D 1 
HETATM 49 O OBO 25L . . . H 2 -8.883 -50.468 43.043 1 168.06 ? OBO 25L 1000 D 1 
HETATM 50 O OBP 25L . . . H 2 -13.617 -52.33 40.987 1 85.42 ? OBP 25L 1000 D 1 
HETATM 51 O OBQ 25L . . . H 2 -9.871 -49.381 40.301 1 137.14 ? OBQ 25L 1000 D 1 
HETATM 52 O OBR 25L . . . H 2 -16.351 -53.325 39.566 1 126.82 ? OBR 25L 1000 D 1 
HETATM 53 O OBS 25L . . . H 2 -7.247 -45.604 44.178 1 163.96 ? OBS 25L 1000 D 1 
HETATM 54 O OBT 25L . . . H 2 -5.933 -46.928 45.815 1 148.64 ? OBT 25L 1000 D 1 
HETATM 55 C CBV 25L . . . H 2 -13.284 -50.776 46.454 1 140.17 ? CBV 25L 1000 D 1 
HETATM 56 C CBW 25L . . . H 2 -16.242 -49.77 45.55 1 90.62 ? CBW 25L 1000 D 1 
HETATM 57 C CBY 25L . . . H 2 -12.358 -50.05 45.571 1 139.52 ? CBY 25L 1000 D 1 
HETATM 58 C CBZ 25L . . . H 2 -15.748 -49.986 44.179 1 93.6 ? CBZ 25L 1000 D 1 
HETATM 59 C CCB 25L . . . H 2 -11.777 -50.737 44.4 1 142.06 ? CCB 25L 1000 D 1 
HETATM 60 C CCC 25L . . . H 2 -15.714 -51.348 43.625 1 107.96 ? CCC 25L 1000 D 1 
HETATM 61 C CCF 25L . . . H 2 -8.769 -48.288 42.11 1 160.61 ? CCF 25L 1000 D 1 
HETATM 62 C CCG 25L . . . H 2 -14.793 -51.801 39.015 1 104.94 ? CCG 25L 1000 D 1 
HETATM 63 C CCI 25L . . . H 2 -7.967 -49.392 42.808 1 162.05 ? CCI 25L 1000 D 1 
HETATM 64 C CCJ 25L . . . H 2 -13.532 -52.446 39.556 1 96.45 ? CCJ 25L 1000 D 1 
HETATM 65 C CCK 25L . . . H 2 -10.048 -48.956 41.652 1 156.73 ? CCK 25L 1000 D 1 
HETATM 66 C CCL 25L . . . H 2 -15.796 -52.128 40.094 1 112.28 ? CCL 25L 1000 D 1 
HETATM 67 C CCN 25L . . . H 2 -10.2 -50.143 42.587 1 158.92 ? CCN 25L 1000 D 1 
HETATM 68 C CCO 25L . . . H 2 -14.991 -52.335 41.383 1 97.41 ? CCO 25L 1000 D 1 
HETATM 69 N NCQ 25L . . . H 2 -10.998 -49.847 43.802 1 155.16 ? NCQ 25L 1000 D 1 
HETATM 70 N NCR 25L . . . H 2 -15.22 -51.243 42.368 1 104.69 ? NCR 25L 1000 D 1 
HETATM 71 P PCS 25L . . . H 2 -7.353 -45.163 42.641 1 201.07 ? PCS 25L 1000 D 1 
HETATM 72 P PCT 25L . . . H 2 -7.267 -47.671 46.396 1 141.65 ? PCT 25L 1000 D 1 
HETATM 73 P PCU 25L . . . H 2 -17.605 -54.213 40.018 1 131.21 ? PCU 25L 1000 D 1 
HETATM 74 P PCV 25L . . . H 2 -11.057 -49.475 39.209 1 120.72 ? PCV 25L 1000 D 1 
HETATM 75 P PCW 25L . . . H 2 -5.835 -45.57 44.928 1 136.97 ? PCW 25L 1000 D 1 
#
_model_server_stats.io_time_ms              34 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           75 
#